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302 results for “population dispersal”
Quantifying dispersal variability among nearshore marine populations
<p>Project measuring variability in larval dispersal for clownfish <em>Amphiprion clarkii</em>. This repository is organized into 3 folders:</p> <ol> <li>code -This contains the R code to produce the results in the manuscript “Quantifying dispersal variability among nearshore marine populations”. My original coding was done in Jupyter Notebooks (IR Kernel). These notebooks are included in the folder "WorkingJupyterNotebooks", and can be viewed as HTML using the web site <a href="https://nbviewer.jupyter.org/">https://nbviewer.jupyter.org/</a>. The .R files were produced by downloading these notebooks as .R files.</li> <li>data -This contains the data to run the analysis using the code. The genomic data here is a filtered to use in Colony2. It also contains a backup of the SQL database with all data for the clownfish field and wetlab work in the Pinsky lab.</li> <li>genomics -This is the version of <a href="https://github.com/pinskylab/genomics">https://github.com/pinskylab/genomics</a> as it was at the time of this project. It contains all molecular wetlab metadata, raw genomic data, bioinformatics code, and protocols.</li> </ol> <p>Please contact Katrina at <a href="mailto:kat.catalano@rutgers.edu">kat.catalano@rutgers.edu</a> with any questions.</p>
FIGURE 30 in Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status
FIGURE 30. Bayesian tree (TPM 2 uf + G) for Aegla species based on partial fragment of 16 S. Node numbers represent posterior probabilities (values <50 % are not shown), and divergence time in millions of years (my); * indicates the calibration points to molecular clock. The clade C proposed by Pérez-Losada et al. (2004) is highlighted in grey. The basin and sub-basin origin of the discussed species in this study are shown after the specific names.
FIGURE 24. A – L in Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status
FIGURE 24. A – L, proximal portion of fifth pereiopod showing coxa and sexual tube of long and narrow type. A – B, Aegla paulensis Schmitt, 1942 s. str., male topotype (MZUSP 34368). C – D, Aegla rosanae Campos Jr., 1998, male topotype (MZUSP 34369). E – F, Aegla vanini n. sp., male paratype (MZUSP 34372). G – H, Aegla japi n. sp., male paratype (MZUSP 34375). I – J, Aegla jaragua n. sp. male paratype (MZUSP 34378). K-L, Aegla jundiai n. sp., male paratype (MZUSP 13490). Bars: A – D, F – H, J = 200 µm; K, L = 100 µm; E, I = 500 µm.
FIGURE 8 in Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status
FIGURE 8. Types of Aegla Leach, 1820 male sexual tubes. A, long and narrow (A. lancinhas Bond-Buckup & Buckup in Santos et al., 2015, MZUSP 34403). B, short and wide (A. leptochela Bond-Buckup & Buckup, 1994, MZUSP 34491).
FIGURE 1 in Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status
FIGURE 1. Distribution of the species of Aegla in four main hydrographic basins of southern Brazil: Rio Grande, Rio Tietê (Upper Paraná system), Rio Paraíba do Sul and Ribeira de Iguape. Indications L 1 through L 7 refer to the locations mentioned under “ sampling area ” in the Material & Methods section.
Figure S1 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure S1. Snail counts (y axis) at sites A (above) and B (below) for the three cohorts showing unmarked and recaptures separately for each visit: juveniles too small to mark, juveniles newly dotted, dotted juveniles recaptured, newly marked adult and subadult individuals, already marked adult and subadult individuals (recaptures).
Figure 9 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 9. Temperature and humidity profiles at sites A, B, and C between April and December 2017. TA = temperature at site A (three loggers), TB = temperature at site B (three loggers), TC = temperature at site C (three loggers). HA, HB, HC = humidity profile at sites A, B, and C, respectively. Some missing data are due to temporal failure of some loggers. Humidity loggers stopped to function completely in the middle of October at all three sites.
Figure 7 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 7. Minimum distances (in meters, x axis) of numbered individuals (y axis: absolute numbers of individuals) from sites A and B, over all subsequent observations.
Figure 6 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 6. Minimum distances (in meters, x axis) of numbered individuals (y axis: absolute numbers of individuals) from site A and B of all observations with a ~1-week interval.
Figure 3 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 3. Snail counts at site A (above) and site B (below); juv. small = small juveniles (too small to mark); juv. dotted = dotted individuals; subadults and adults = numbered subadults/adults.
Figure 8 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 8. Sum of MDs (in meters, x axis) over all subsequent observations (over the season) of numbered individuals (y axis: absolute numbers of individuals) from sites A and B.
Figure 2. M in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 2. M. subcristata shell-size classes: (A) small juveniles (too small to mark), appr. 8 mm shell height), (B) dotted juvenile, appr. 12 mm; (C) numbered adult, appr. 20 mm.
Figure 5 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 5. Population estimated according to Jolly-Seber for site A (above), site B (below). Y axis: estimated number of individuals.
Figure 1 in First data on population estimates and dispersal of Montenegrina subcristata - a field study at Virpazar, Montenegro
Figure 1. Study area with three study sites (A, B, C). Note that due to the perspective view site B and C appear much smaller.
Linked collectors and determiners for: Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status.
Natural history specimen data linked to collectors and determiners held within, "Morphological and molecular data reveal the cryptic diversity among populations of Aegla paulensis (Decapoda, Anomura, Aeglidae), with descriptions of four new species and comments on dispersal routes and conservation status". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/53780a8e-66fa-4263-8542-ff9c540ab37d">https://bionomia.net/dataset/53780a8e-66fa-4263-8542-ff9c540ab37d</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/53780a8e-66fa-4263-8542-ff9c540ab37d">https://gbif.org/dataset/53780a8e-66fa-4263-8542-ff9c540ab37d</a>. Formatted as a Frictionless Data package.
Figure 5 in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 5. Genetic clustering based on allele frequencies of 12 microsatellite loci genotyped for Rattus rattus Complex samples from MSEA and extralimital distribution in Indonesia (IDN). (A) PCoA, (B) STRUCTURE barplot.
Figure 4. Haplotype network for Rattus rattus Complex II in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 4. Haplotype network for Rattus rattus Complex II. The Nusa Tenggara samples are illustrated on the right of the network.
Figure 1 in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 1. Cranial measurements taken for each specimen: supraoccipital height (BH), basal length (BLL), basilar length (BRL), length of the bullae (BULL), condylobasal length (CBL), condylobasilar length (CBRL), minimum corpus length (CL), length of the diastema (DA), foramen magnum height (FMH), foramen magnum width (FMW), length of the incisive foramina (FOR), length of the face (GES), length of the braincase (HKL), thickness of the incisor (ID), interorbital breadth (IOB), mandibular diastema length (LAL), thickness lower incisor (LID), mandibular alveoli length (MAL), mandibular toothrow length (crown) (MCL),mandibular depth (MD), maximum mandibular height (MDL), mandibular depth at M1 (MID), mandibular length (ML), nasal length (NAS), nasal breadth (NASB), occipital breadth (OCB), occipital length (OCN), supraoccipital width at the occipital condyles (OCW), length of the upper molar row (alveoli) (OZRA), length of the upper molar row (crown) (OZRK), palatal length (PL), palatine breadth (PRL), rostral breadth (RB), rostral height (RH), breadth of braincase (SKB), height of braincase with bullae (SKH), zygomatic plate (ZP), zygomatic breadth (ZYG).
Figure 3. Haplotype networks for Rattus exulans, R in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 3. Haplotype networks for Rattus exulans, R. argentiventer, and Rattus rattus Complex LIV. Sunda refers to the islands of Borneo, Java, and Sumatra; the Indonesian sample (brown) lacks further collection information.
Figure 6 in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 6. Summary of likely movements of the three commensal rodents through the Nusa Tenggara island chain. Rat illustrations redrawn and adapted from R. Budden, location of RS3 Dong Song drums from Calo (2014).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.