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13 results for “pore systems”
Simulation systems for: "Pore formation in complex biological membranes: torn between evolutionary needs"
<p>Simulation systems for the publication:</p> <div> <div> <div> <p>Leonhard J. Starke, Christoph Allolio, and Jochen S. Hub, <em>Pore formation in complex biological membranes: torn between evolutionary needs</em>, BioRxiv (2024), doi: <a href="https://doi.org/10.1101/2024.05.06.592649">10.1101/2024.05.06.592649</a></p> <p>Required software:<br>GROMACS Chain Coordinate, a modified GROMACS variant for pore formation across membranes or stalk formation between membranes: <a href="https://gitlab.com/cbjh/gromacs-chain-coordinate">https://gitlab.com/cbjh/gromacs-chain-coordinate</a></p> <p>See README_small.sh and README_large.sh files for instructions on how to run pulling simulations for inducing pores in the provided complex membrane models.</p> </div> </div> </div>
Рис. 2. Mukhina elegans (Mukhina, 1981) (самка): А — трофико-сенсорный отΔеΛ теΛа; Б — поΛовая система; В — переΔний конец теΛа; Г — хвост; À — фрагмент кутикуΛы с боковым поΛем бп — боковое поΛе, да — ΔробиΛьный аппарат, в — вуΛьва, зм — заΔняя матка, кб — карΔиаΛьный буΛьбус, кск — кΛетки среΔней кишки, нк — нервное коΛьцо, пм — переΔняя матка, р — ректум, рт — ренетта, с — сперма, ск — среΔняя кишка, сп — семяприемник, ф — фазмиΔы, хс — хейΛостома, эп — экскреторная пора, я — яичник Fig. 2. Mukhina elegans (Mukhina, 1981) (female): A — trophic-sensory part of the body; B — the reproductive system; C — the front end of the body; G — the tail; D — fragment of the cuticle with a side field бп — side field, да — crushing apparatus, в — vulva, зм — posterior uterus, кб — cardial bulb, кск — cells of the mid-intestine, нк — nerve ring, пм — anterior uterus, р — rectum, рт — renetta с — sperm, ск — mid-intestin, сп — seminal receptacle, ф — phasmids, хс — cheilostoma, эп — excretory pore, я — ovary in A New Species Sp. Nov. (Nematoda, Cephalobidae) From Primorsky Region (Russia)
Рис. 2. Mukhina elegans (Mukhina, 1981) (самка): А — трофико-сенсорный отΔеΛ теΛа; Б — поΛовая система; В — переΔний конец теΛа; Г — хвост; À — фрагмент кутикуΛы с боковым поΛем бп — боковое поΛе, да — ΔробиΛьный аппарат, в — вуΛьва, зм — заΔняя матка, кб — карΔиаΛьный буΛьбус, кск — кΛетки среΔней кишки, нк — нервное коΛьцо, пм — переΔняя матка, р — ректум, рт — ренетта, с — сперма, ск — среΔняя кишка, сп — семяприемник, ф — фазмиΔы, хс — хейΛостома, эп — экскреторная пора, я — яичник Fig. 2. Mukhina elegans (Mukhina, 1981) (female): A — trophic-sensory part of the body; B — the reproductive system; C — the front end of the body; G — the tail; D — fragment of the cuticle with a side field бп — side field, да — crushing apparatus, в — vulva, зм — posterior uterus, кб — cardial bulb, кск — cells of the mid-intestine, нк — nerve ring, пм — anterior uterus, р — rectum, рт — renetta с — sperm, ск — mid-intestin, сп — seminal receptacle, ф — phasmids, хс — cheilostoma, эп — excretory pore, я — ovary
Рис. 1. Teratocephalus lirellus Andrassy, 1969: A — трофико-сенсорный отΑеΛ теΛа; B — поΛовая система; C — фрагмент теΛа с боковым поΛем; D — хвост; E — фрагмент поΛовой системы и среΑней кишки; F, G — переΑний конец теΛа. am — амфиΑы, lf — боковое поΛе, v — вуΛьва, cc — гоΛовная капсуΛа, pu — заΑняя матка, au — переΑняя матка, r — ренетта, ep — экскреторная пора, o — яичник Fig. 1. Teratocephalus lirellus Andrassy, 1969: A — trophic-sensory part of the body; B — reproductive system; C — fragment of the body with a lateral field; D — tail; E — fragment reproductive system and intestine; F, H — anterior end of the body. am — amphid; lf — lateral field; v — vulva; cc — cephalic capsule; pu — posterior uterus; au — anterior uterus; r — renetta; ep — excretory pore; o — ovary in Recent data on soil nematodes of the families Teratocephalidae and Metateratocephalidae from Primorsky Region, Russia
Рис. 1. Teratocephalus lirellus Andrassy, 1969: A — трофико-сенсорный отΑеΛ теΛа; B — поΛовая система; C — фрагмент теΛа с боковым поΛем; D — хвост; E — фрагмент поΛовой системы и среΑней кишки; F, G — переΑний конец теΛа. am — амфиΑы, lf — боковое поΛе, v — вуΛьва, cc — гоΛовная капсуΛа, pu — заΑняя матка, au — переΑняя матка, r — ренетта, ep — экскреторная пора, o — яичник Fig. 1. Teratocephalus lirellus Andrassy, 1969: A — trophic-sensory part of the body; B — reproductive system; C — fragment of the body with a lateral field; D — tail; E — fragment reproductive system and intestine; F, H — anterior end of the body. am — amphid; lf — lateral field; v — vulva; cc — cephalic capsule; pu — posterior uterus; au — anterior uterus; r — renetta; ep — excretory pore; o — ovary
Fig. 2. Oepikellid ostracods from Palaeozoic erratic boulders. A in Sexual dimorphism and pore systems in Ordovician ostracodes
Fig. 2. Oepikellid ostracods from Palaeozoic erratic boulders. A. Holotype of the type species of the oepikellid ostracod Levisulculus, Levisulculus lineatus Jaanusson, 1957 (UM T89), female left valve, length (L) 0.89 mm. B. Holotype of Primitia extraria Öpik, 1937 (TUG 1120−1; Kukruse Stage, Estonia), tecnomorphic right valve, L 0.88 mm. C. Holotype of Primitia troedssoni Thorslund, 1940 (UM T10), tecnomorphic right valve, L 0.79 mm. D. Holotype of Primitia granulosa Thorslund, 1940 (UM T11), tecnomorphic right valve, L 0.86 mm (Jaanusson 1957: pl. 8: 12, Öpik 1937: pl. 10: 19, Thorslund 1940: pl. 1: 16, 13). E–H. Primitia elongata obliqua Steusloff, 1895: type series, all tecnomorphic valves embedded in rock. Geschiebe (glacial erratic boulder) from Neubrandenburg. E. Lectotype GG 114−27, left valve, L 1.16 mm (without velum). F. GG 114−26, right valve, L 1.07 mm. G. GG 114−28, right valve, L 0.99 mm (without velum). H. GG 114−29, right valve, L 0.82 mm. I. Primitia canaliculata Steusloff, 1895, holotype GG 114−25, steinkern of a juvenile right valve embedded in rock, L 0.70 mm, same erratic boulder.
Data Set: Single-well pore pressure preconditioning for Enhanced Geothermal System stimulation
<p>This is the Python code and plotted figure data used to create the figures for the submitted manuscript, "Single-well pore pressure preconditioning for Enhanced Geothermal System stimulation" submitted to JGR: Solid Earth in 2022.</p> <p>The manuscript concerns a novel technique developed for EGS stimulation, called pore pressure or effective normal stress preconditioning, which preemptively alters the stress field along a fault prior to injection, such that the risk of induced seismicity is reduced. Using a slightly altered version of a preexisting model (a combination of an analytical pore pressure model and a linear slip weakening seismicity model) the effect of this kind of treatment is evaluated.</p>
Fig. 1 in Sexual dimorphism and pore systems in Ordovician ostracodes
Fig. 1. Morphological terminology explained in Swantina pseudobliqua.
FIGURE 5 in A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Pará, Brazil, with description of superficial neuromasts and pores of lateral line system
FIGURE 5. Scatter diagram of sixteen Microglanis species on first and second axis of size-free Canonical Variates Analysis: Microglanis carlae (solid diamond, n = 11), M. cibelae (open circle, n = 3), M. cottoides (open square, n = 7), M. eurystoma (open diamond, n = 12), M. garavelloi (horizontal rectangle, n = 9), M. iheringi (open triangle, n = 4), M. leptostriatus (vertical rectangle, n = 8), M. malabarbai (solid triangle, n = 2), M. nigripinnis (cross, n = 3), M. parahybae (X, n = 10), M. pataxo (ellipse, n = 10), M. pellopterygius (open inverted triangle, n = 2), M. poecilus (solid square, n = 5), M. robustus (dark circle, n = 15), M. secundus (solid inverted triangle, n = 6), and M. variegatus (asterisk, n = 5).
FIGURE 4 in A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Pará, Brazil, with description of superficial neuromasts and pores of lateral line system
FIGURE 4. Hydrographic map of South America with the distribution of species of Microglanis analized, except M. ater. Microglanis carlae (open inverted triangle), M. cibelae (open circle), M. cottoides (open square), M. eurystoma (open diamond), M. garavelloi (solid horizontal rectangle), M. iheringi (open triangle), M. leptostriatus (solid vertical rectangle), M. malabarbai (dark triangle), M. nigripinnis (cross), M. parahybae (X), M. pataxo (solid square inside open square), M. pellopterygius (solid inverted triangle), M. poecilus (solid square), M. robustus (solid circle), M. secundus (solid diamond), M. variegatus (asterisk), and M. zonatus (solid circle inside solid square). Shaded area represents the Tocantins-Araguaia system. Low Tocantins-Araguaia area in the amplification: 1 = Rio Tocantins and 2 = Rio Araguaia. The small gray dots represent municipal districts; names are pointed by arrows. Black dot with white point represents the locality of M. robustus holotype.
FIGURE 3 in A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Pará, Brazil, with description of superficial neuromasts and pores of lateral line system
FIGURE 3. Diagram of mechano-sensorial organs of paratype of Microglanis robustus (INPA 32885). In blue are represented the canals of lateral lines: mc - mandibular canal, soc - supraorbital canal, ioc - infraorbital canal, oc - otic canal, poc - postotic canal, prc - preopercular canal, pbpoc - pterotic branch of the postotic canal, abioc - antorbital branch of the infraorbital canal, pbsoc - parietal branch of the supraorbital canal, and llc - lateral line canal. The red lines represent the superficial neuromasts lines: nl - nasal line, rl - rostral line, al - anterior line, ml - mandibular line, stal - supratemporal acessory line, dtl - dorsal-trunk line, sdtl - subdorsal-trunk line, mtl - medium-trunk line and svtl - subventral-trunk line. Other abbreviations represent: pcll - pore canal of the lateral line, mb - maxillary barbel, imb - inner mental barbel, omb - outer mental barbel, ps - pectoral-fin spine, ds - dorsal-fin spine, hp - posterior cleithral process, oan - opening anterior nasal, and opn - opening posterior nasal. The white dots on the canals represent pores. Black dots with red center represent superficial neuromasts.
FIGURE 2 in A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Pará, Brazil, with description of superficial neuromasts and pores of lateral line system
FIGURE 2. Dorsal view of left pectoral-fin spine of paratype of Microglanis robustus (INPA 7957, Rio Tocantins, rapids in Jatobal, Tucuruí, Pará, Brazil). Scale bar = 1 mm.
FIGURE 1 in A new species of Microglanis (Siluriformes, Pseudopimelodidae) from lower Rio Tocantins basin, Pará, Brazil, with description of superficial neuromasts and pores of lateral line system
FIGURE 1. Microglanis robustus, holotype, INPA 8053, 20.3 mm SL, Rio Tocantins, in small rapids below the municipal district of Jatobal, Tucuruí, Pará, Brazil.
Clogging and Unclogging of Fine Particles in Porous Media: Micromechanical Insights from an Analog Pore System
<p>Contain data for supporting and replicating the article results</p>
A widely-occurring family of pore-forming effectors broadens the impact of the Serratia Type VI secretion system
GEO Series GSE301252. Pseudomonas simiae. 9 samples. Type: Other.
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