Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
20
datasets available to search
ShareScore release 0.9.0
Dataset results
20 results for “predator indirect effects”
Relyea, R. A. 2000. Trait-mediated indirect effects in larval anurans: Reversing competition with the threat of predation. Ecology 81:2278-2289.
Ecologists recently have been focusing on the role that trait-mediated indirect effects can have on community structure and composition. To date, this work has primarily focused on the effects of predator-induced behavioral plasticity on communities. However, predator-induced morphological plasticity, which has been documented in many taxa, might also lead to trait-mediated indirect effects. Here, I examined how predators altered the behavior and morphology of larval wood frogs (Rana sylvatica) and leopard frogs (R. pipiens) and how these phenotypic changes altered the outcome of competition between the two species. Competition in the absence of caged predators was asymmetric; when reared separately, leopard frogs grew more than wood frogs, but when competing (without predators), wood frogs grew faster than leopard frogs. The presence of caged predators reversed the outcome of competition between the two anuran prey. In the presence of larval dragonflies (Anax spp.) or caged mudminnows (Umbra limi), leopard frogs grew faster than wood frogs while total tadpole biomass production remained unchanged. Thus, there was a predator-mediated indirect effect. Because predators alter both the behavior and morphology of larval anurans and both of these traits are known to affect resource consumption and growth, both are potential mechanisms to explain the change in competitive outcome. Changes in behavior were not related to changes in growth, but changes in morphology (specifically mouth width and tail length) were related to changes in growth. When competitors were added (without predators), wood frogs increased their mouth width by 10% and their tail length by 3%, while leopard frogs increased their mouth width by 5% and did not change their tail length. The greater increase in mouth width for wood frogs should increase their forage intake, since tadpoles feed by scraping periphyton; the importance of a 3% longer tail in competitive ability is unknown. The presence of the p
Data from: Direct and indirect effect of cannibalism and intraguild predation in the two sibling Harmonia ladybird beetles
<p>In this study, we focused on the direct (i.e. predation) and indirect (i.e. potential threat from coexisting with a larger individual) effects of cannibalism and intraguild predation (IGP) during larval stages of two sibling ladybird beetles. These effects play an important role in the coexistence of the generalist–common Harmonia axyridis and specialist–rare H. yedoensis (Coleoptera: Coccinellidae). Direct predation effect of cannibalism and IGP were asymmetric in the two sibling ladybird beetles; the fourth instar larvae of H. axyridis were better intraguild predators than cannibals, while the reverse was true in the larvae of H. yedoensis. Neither cannibalism nor IGP significantly affected female body weight in either species. Larval H. axyridis surviving exposure to cannibalism or IGP had a reduced number of ovarioles as adults, whereas adult H. yedoensis ovarioles were not affected. For the indirect effects, longer developmental times in males and females and a lower total number of ovarioles in females were detected in H. axyridis. In H. yedoensis, shorter developmental time of males, lighter adult weight and fewer total ovarioles in females were observed. Olfactometer choice experiments clarified that the fourth instar larvae of H. axyridis avoided the first instar conspecific larvae, while those of H. yedoensis were attracted to the odours from H. axyridis and conspecifics. Thus, H. axyridis has an avoidance mechanism only for cannibalism but not for IGP, whereas H. yedoensis does not have any avoidance mechanism. These different behaviours in the direct and indirect effects of cannibalism and IGP observed in the laboratory may play important roles in the coexistence of generalist–common H. axyridis and specialist–rare H. yedoensis in natural conditions, compensating for the large handicap of H. yedoensis at reproductive interference from H. axyridis.</p>
Data from: Comparing the indirect effects between exploiters in predator-prey and host-pathogen systems
DataS1 <p>These files are Maple and Matlab scripts for analyzing the predator-prey and host-pathogen models in "Comparing the indirect effects between exploiters in predator-prey and host-pathogen systems" and generating the figures in that study. </p>
Data from: Predator performance and fitness Is dictated by herbivore prey type plus indirect effects of their host plant
<p>Animals, including herbivores and predators, use diet-mixing to balance their macro- and micronutrient intake. Recent work demonstrated that lady beetles fed only pea aphids from fava beans had reduced fitness caused by a deficiency of dietary sterols. However, beetles redressed this deficit by eating fava bean leaves. In the current study we used Coccinella septempunctata as a model to test the hypotheses that pea aphids are a poor sterol resource independent of their host plant, and that fava beans produce low quality prey regardless of aphid species. Additionally, we tested the reproductive rescue capacity of alfalfa and barley foliage compared to fava, and profiled the sterols of phloem exudates, foliage, and aphids reared on these different hosts. Beetle fecundity and egg viability was significantly better when provided pea aphids reared on alfalfa (compared to fava beans) and green peach aphids reared on fava plants. Alfalfa and barley leaves were not consumed by beetles and did not support beetle reproduction. The sterol profile of aphids largely reflected their host plant phloem. However, green peach aphids from fava acquired 125-times more sterol than pea aphids from fava. Our findings show how the sterol content of different host-plants can affect the third trophic level. Our results suggest that 1) prey quality varies depending on prey species, even when they occur on the same plant, 2) plant species can mediate prey quality, 3) host plant-mediated effects on prey quality partially drive omnivory, and 4) diet-mixing benefits growth and reproduction by redressing micronutrient deficits.</p>
Data from: Direct and indirect effect of cannibalism and intraguild predation in the two sibling Harmonia ladybird beetles
Open the record for dataset details and reuse information.
Data from: Predator performance and fitness Is dictated by herbivore prey type plus indirect effects of their host plant
Open the record for dataset details and reuse information.
Data from: Comparing the indirect effects between exploiters in predator-prey and host-pathogen systems
Open the record for dataset details and reuse information.
Risk of predation increases susceptibility to parasitism via trait-mediated indirect effects
Open the record for dataset details and reuse information.
Dataset from: Positive indirect effects of top-predators on the survival and behaviour of juvenile fishes
<p>Top-predators can suppress mesopredator behaviour through risk effects. However, there is limited understanding of whether such behavioural suppression can dampen the lethal and sub-lethal effects of mesopredators on bottom level prey. Here, we document a field experiment that examines whether the presence of top-predator cues (visual and chemical stimuli from a coral trout) can cascade to indirectly influence the behaviour and survival of juvenile fish prey of different species (Pomacentrus amboinensis and P. chrysurus) and size (small = 1.18 cm SL vs large = 1.32 cm SL). Results showed that habitat patches exposed to top-predator cues received fewer visits and foraging attacks from mesopredators, leading to higher space use (~46%), feeding rate (~95%), and survival (~67%) from juvenile fish prey. Survival was always higher for individuals of P. amboinensis and of large-size, independent of the presence or absence of top-predator cues. Our data indicate that predation risk from the top-predator indirectly favoured the persistence and behaviour of juvenile fishes by promoting risk-averse behavioural responses in mesopredators. This study underscores the behavioural mechanisms by which risk effects can cascade through the food web and highlights the consequences that harvesting top-predators may have on the replenishment of bottom prey populations.</p>
Data from: Allometric scaling of indirect effects: body size ratios predict non-consumptive effects in multi-predator systems
1. Non-consumptive effects (NCES) frequently lead to non-independent effects of multiple predators. While such emergent predator effects are ubiquitous in natural communities, the strength of these effects varies among studies and systems, making it difficult to predict a priory how changes in predator diversity influence prey suppression. Thus, identifying general scaling rules which can explain this variation of non-independent effects is vital for modeling natural communities and how they respond to biodiversity loss. 2. Body size is a key trait determining the nature and strength of ecological interactions. While great progress has been made using allometric relationships to predict the interaction strength of predator-prey pairs, it is unknown whether similar relationships explain variation in the strength of NCEs, and how they are related to consumptive effects. 3. Here we experimentally manipulate the relative size difference of multiple predators to determine whether NCEs follow general allometric scaling relationships in an aquatic multi-predator system. 4. Results demonstrate that the presence and strength of NCEs can vary dramatically across predator combinations. However, this variation scaled predictably with the size ratio of predators; increasing the size difference among predators increased NCEs. This pattern was driven by a size-mediated shift in "food web motif" from competition to intraguild predation and a positive correlation of NCEs and intraguild predation rate. 5. Results indicate that models which assume that consumers have independent effects are particularly likely to make erroneous predictions when predators differ substantially in size, but simple allometric relationships of NCEs could be used to correct this bias.
Data from: Indirect effects of predators control herbivore richness and abundance in a benthic eelgrass (Zostera marina) mesograzer community
1. Herbivore communities can be sensitive to changes in predator pressure (top-down effects) and resource availability (bottom-up effects) in a wide range of systems. However, it remains unclear whether such top-down and bottom-up effects reflect direct impacts of predators and/or resources on herbivores, or are indirect, reflecting altered interactions among herbivore species. 2. We quantified direct and indirect effects of bottom-up and top-down processes on an eelgrass (Zostera marina) herbivore assemblage. In a field experiment, we factorially manipulated water column nutrients (with Osmocote™ slow-release fertilizer) and predation pressure (with predator exclusion cages) and measured the effects on herbivore abundance, richness and beta diversity. We examined likely mechanisms of community responses by statistically exploring the response of individual herbivore species to trophic manipulations. 3. Predators increased herbivore richness and total abundance, in both cases through indirect shifts in community composition. Increases in richness occurred through predator suppression of common gammarid amphipod species (Monocorophium acherusicum and Photis brevipes), permitting the inclusion of rarer gammarid species (Aoroides columbiae and Pontogeneia rostrata). Increased total herbivore abundance reflected increased abundance of a caprellid amphipod species (Caprella sp.), concurrent with declines in the abundance of other common species. Furthermore, predators decreased beta diversity by decreasing variability in Caprella sp. abundance among habitat patches. 4. Osmocote™ fertilization increased nutrient concentrations locally, but nutrients dissipated to background levels within 3 m of the fertilizer. Nutrient addition weakly affected the herbivore assemblage, not affecting richness and increasing total abundance by increasing one herbivore species (Caprella sp.). Nutrient addition did not affect beta diversity. 5. We demonstrated that assemblage-level effects of trophic manipulations on community structure are the result of distinct and often indirect responses of herbivore species. These results underscore the importance of understanding herbivore–herbivore interactions in a system commonly subjected to both eutrophication and overfishing.
Environmental stress gradients regulate the relative importance of predator density- and trait-mediated indirect effects in oyster reef communities
<p>Predators affect community structure by influencing prey density and traits, but the importance of these effects often is difficult to predict. We measured the strength of blue crab predator effects on mud crab prey consumption of juvenile oysters across a flow gradient that inflicts both physical and sensory stress to determine how the relative importance of top predator density-mediated indirect effects (DMIEs) and trait-mediated indirect effects (TMIEs) change within systems. Overall, TMIEs dominated in relatively benign flow conditions where blue crab predator cues increased oyster survivorship by reducing mud crab oyster consumption. Blue crab DMIEs became more important in high sensory stress conditions, which impaired mud crab perception of blue crab chemical cues. At high physical stress, the environment benefitted oyster survival by physically constraining mud crabs. Thus, factors that structure communities may be predicted based on an understanding of how physical and sensory performances change across environmental stress gradients.</p>
Warming and top predator loss drive direct and indirect effects on multiple trophic groups within and across ecosystems
<p>1. The interspecific interactions within and between adjacent ecosystems strongly depend on the changes in their abiotic and biotic components. However, little is known about how climate change and biodiversity loss in a specific ecosystem can impact the multiple trophic interactions of different biological groups within and across ecosystems.<br> 2. We used natural micro-ecosystems (tank-bromeliads) as a model system to investigate the main and interactive effects of aquatic warming and aquatic top predator loss (i.e., trophic downgrading) on trophic relationships in three integrated food web compartments: i) aquatic microorganisms, ii) aquatic macroorganisms, and iii) terrestrial predators (i.e., via cross ecosystem effects).<br> 3. The aquatic top predator loss substantially impacted the three food web compartments. In the aquatic macrofauna compartment, trophic downgrading increased the filter-feeder richness and abundance directly and indirectly via an increase of detritivore richness, likely through a facilitative interaction. For the microbiota compartment, aquatic top predator loss had a negative effect on algae richness, probably via decreasing the input of nutrients from predator biological activities. Furthermore, the more active terrestrial predators responded more to aquatic top predator loss, via an increase of some components of aquatic macrofauna, than more stationary terrestrial predators. The aquatic trophic downgrading indirectly altered the richness and abundance of cursorial terrestrial predators, but these effects had different direction according to the aquatic functional group, filter-feeder or other detritivores. The web-building predators were indirectly affected by aquatic trophic downgrading due to increased filter-feeder richness. Aquatic warming did not affect the aquatic micro- or macro-organisms but did positively affect the abundance of web-building terrestrial predators.<br> 4. These results allow us to raise a predictive framework of how different anthropogenic changes predicted for the next decades, such as aquatic warming and top predator loss, could differentially affect multiple biological groups through interactions within and across ecosystems.</p>
Data from: Direct and indirect effects of cougar predation on bighorn sheep fitness
<div> <p>We sought to evaluate the direct and indirect fitness effects of intense cougar (<em>Puma concolor</em>) predation using 48 years of data on marked bighorn sheep (<em>Ovis canadensis</em>) in Ram Mountain, Alberta, Canada. We compared years of intense cougar predation with years with no or occasional cougar predation. We first quantified the effects of predation on neonatal, weaning, and overwinter lamb survival, three metrics potentially affected by direct and indirect effects. We then investigated the possible indirect effects of intense cougar predation on lamb production, female summer mass gain, and lamb mass at weaning. Indirect effects included a 14.2% decline in lamb production. Female summer mass gain decreased by 15.6 % and lamb mass at weaning declined by 8.0% in years of intense cougar predation. Here are the six datasets, joined with a README.md file for the data description, in addition to the six corresponding R scripts for replicating the results.</p> </div>
Dataset from: Positive indirect effects of top-predators on the survival and behaviour of juvenile fishes
Open the record for dataset details and reuse information.
Data from: Allometric scaling of indirect effects: body size ratios predict non-consumptive effects in multi-predator systems
Open the record for dataset details and reuse information.
Data from: Indirect effects of predators control herbivore richness and abundance in a benthic eelgrass (Zostera marina) mesograzer community
Open the record for dataset details and reuse information.
Data from: Direct and indirect effects of cougar predation on bighorn sheep fitness
Open the record for dataset details and reuse information.
Environmental stress gradients regulate the relative importance of predator density- and trait-mediated indirect effects in oyster reef communities
Open the record for dataset details and reuse information.
Warming and top predator loss drive direct and indirect effects on multiple trophic groups within and across ecosystems
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.