Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
26
datasets available to search
ShareScore release 0.9.0
Dataset results
26 results for “robust design”
An Empirical Comparison of Meta-Modeling Techniques for Robust Design Optimization
<p>This is the data and source code used in the paper below:</p> <p>Sibghat Ullah, Hao Wang, Stefan Menzel, Bernhard Sendhoff and Thomas Bäck, “An Empirical Comparison of Meta-Modeling Techniques for Robust Design Optimization”, in 2019 IEEE Symposium Series on Computational Intelligence (SSCI), Xiamen, China, 6-9 December 2019, doi: 10.1109/SSCI44817.2019.9002805</p> <p>This research investigates the potential of using meta-modeling techniques in the context of robust optimization namely optimization under uncertainty/noise. A systematic empirical comparison is performed for evaluating and comparing different meta-modeling techniques for robust optimization. The experimental setup includes three noise levels, six meta-modeling algorithms, and six benchmark problems from the continuous optimization domain, each for three different dimensionalities. Two robustness definitions: robust regularization and robust composition, are used in the experiments. The meta-modeling techniques are evaluated and compared with respect to the modeling accuracy and the optimal function values. The results clearly show that Kriging, Support Vector Machine and Polynomial regression perform excellently as they achieve high accuracy and the optimal point on the model landscape is close to the true optimum of test functions in most cases.</p>
Human annotation data for ACL 2020 paper "Designing Precise and Robust Dialogue Evaluators"
<p>Human annotation data for ACL 2020 paper "Designing Precise and Robust Dialogue Evaluators"</p>
Code and scripts used to generate results for: Designing transmissible viral vaccines for evolutionary robustness and maximum efficiency
<p>The danger posed by infectious agents necessitates the development of new tools to both predict and manage emerging diseases. One promising approach is the development of recombinant viral vaccines that are themselves infectious. Transmissible vaccines have been shown to greatly reduce the effort required to control the spread of zoonotic pathogens in their animal reservoirs, thereby limiting the chances of human infection. While this approach can be immensely useful in combating emerging diseases, the ability to self-replicate exposes vaccines to evolutionary change. As a recombinant transmissible vaccine mutates, selection is expected to favor variants with reduced efficacy against the pathogen and increased transmission rates. This creates a trade-off in vaccine design priorities between efficacy, reduction in transmission, and evolutionary stability. Here we ask how such trade-offs influence the overall performance of transmissible vaccines. We find that evolutionary instability can dramatically reduce performance, even for vaccine candidates with ideal efficacy and transmission dynamics. One method to increase functional stability is through the inclusion of multiple redundant antigens. We show that the inclusion of a second antigen can increase functional stability in the face of evolutionary pressures. However, the benefit of genetic redundancy plus any gain in efficacy must outweigh the reduction in transmission for dual-gene designs to be effective. Our results suggest that the successful application of recombinant transmissible vaccines will require consideration of evolutionary dynamics and epistatic effects, as well as basic measurements of epidemiological features.</p>
Data from: Parameterizing the robust design in the BUGS language: lifetime carry‐over effects of environmental conditions during growth on a long‐lived bird
1. Since the initial development of the robust design, this capture‐recapture model structure has been modified to estimate temporary emigration, and expanded to include auxiliary information such as band recovery and live resight data using maximum likelihood approaches. These developments have allowed investigators to separately assess individual and group effects on true survival, site fidelity, and temporary emigration. Additionally, recent advances in the BUGS language have allowed researchers to develop increasingly complex, user‐specified models in Bayesian frameworks. 2. The robust design has rarely been implemented in the BUGS language, and previous attempts to parameterize the robust design in BUGS exhibited strong bias in estimates of temporary emigration rates. Given the limitations of current parameterizations of the robust design in Bayesian frameworks, and our research objectives, we have developed a parameterization of the robust design in the BUGS language that produces unbiased estimates of all model parameters. 3. We use this novel model structure to examine lifetime carry‐over effects of environmental conditions during early life on annual breeding probabilities of Pacific black brent (Branta bernicla nigricans) breeding on the Yukon‐Kuskokwim River Delta in western Alaska. We found that individuals that were more structurally developed as goslings bred at increased rates as adults (β = 0.14, f = 0.94), with no effect on adult survival (β = 0.01, f = 0.62). Additionally, we provide evidence for long‐term declines in apparent survival of breeding adult females at the population level (β = ‐0.01, f = 0.90). 4. This novel model structure can be easily expanded (Gibson et al., in review), and has important implications for population modelling at broad scales, where we apply it to a declining population of Pacific black brent. Given long‐term declines in gosling growth on the Yukon‐Kuskokwim Delta, we predict future declines in population trajectories as a result of lifetime carry‐over effects of environmental conditions during growth on adult fecundity, and long‐term declines in adult survival.
Network files and Python code used in "Designing a sector-coupled European energy system robust to 60 years of historical weather data"
<p><strong>Description</strong></p> <p>This repository contains data presented in the paper <a href="https://www.nature.com/articles/s41467-024-54853-3" target="_blank" rel="noopener">Designing a sector-coupled European energy system robust to 60 years of historical weather data</a>. It contains the derived metrics (.csv) files from a:</p> <ol> <li>joint capacity and dispatch optimization with weather years (design years) from 1960 to 2021 as input</li> <li>dispatch optimization of the 62 capacity layouts using weather years (operational years) different from the design year.</li> </ol> <p>All results from (1) are found in "Capacity_optimization.zip" and results from (2) are found in "Dispatch_optimization.zip".</p> <p>The resulting network files (both from the capacity and dispatch optimization) are located <a href="https://anon.erda.au.dk/cgi-sid/ls.py?share_id=DuGvDWlkeI">here</a>.</p> <p>We also provide the Python code used to derive the metrics and to create the visualizations included in the paper. This is located in "Jupyter_notebooks". The Jupyter notebooks refer to Python scripts located <a href="https://github.com/ebbekyhl/multi-weather-year-assessment">here</a>.</p> <p><strong>Revisions:</strong></p> <p>This version includes the following additions compared to the previous versions: </p> <ul> <li>Timeseries of nodal loads for all years</li> <li>Timeseries of nodal heat pump Coefficient of Performance (COP) </li> <li>Nodal capacity and hourly capacity factors </li> </ul>
archive_image_correlation_robust_geometrical_design_of_2D_sequential_interlocking_assemblies
<p>Archive containing the X and Y deformation, obtained by image correlation, of several laser cut samples of assemblies generated using the method described in the article Robust geometrical design of 2D sequential interlocking assemblies (not published yet)</p>
Supplementary material "Designing robust transformation toward a sustainable circular battery production"
<p>Supplementary material for the publication " Designing robust transformation toward a sustainable circular battery production" in Procedia CIRP. The paper is available at <a href="https://doi.org/10.1016/j.procir.2023.02.069">https://doi.org/10.1016/j.procir.2023.02.069</a>.</p> <p> </p> <p>The underlying research of this publication was funded by the German Federal Ministry of Education and Research within the Competence Cluster Recycling & Green Battery (greenBatt) (03XP0302A) and the research project EffizientNutzen (033R240C). The authors are responsible for the content of this publication.</p> <p><em>Accepted for publication</em></p>
Data from: Parameterizing the robust design in the BUGS language: lifetime carry‐over effects of environmental conditions during growth on a long‐lived bird
Open the record for dataset details and reuse information.
Code and scripts used to generate results for: Designing transmissible viral vaccines for evolutionary robustness and maximum efficiency
Open the record for dataset details and reuse information.
Supporting material for: A multi-batch design to deliver robust estimates of efficacy and reduce animal use – a syngeneic tumour case study
<p>Underlying data, R scripts and subsequent figures are presented to deliver a replicable and transparent analysis for the manuscript "A multi-batch design to deliver robust estimates of efficacy and reduce animal use – a syngeneic tumour case study"</p> <p>Published in Scientific Reports</p> <p>See: <a href="https://protect-de.mimecast.com/s/kCQLCgpRGySlzOwmCNma6d?domain=rdcu.be">https://rdcu.be/b3vj2</a> </p> <p> </p> <p>This is version 2 of this data. This differs from version 1 in the following</p> <p>1. The number of simulation has increased from 300 to 2000 in each simulation cycle</p> <p>2. Script has been added to generate publication level figures</p> <p> </p> <p> </p> <p> </p>
Data from: Applying the multistate capture-recapture robust design to characterize metapopulation structure
1. Population structure must be considered when developing mark-recapture (MR) study designs as the sampling of individuals from multiple populations (or subpopulations) may increase heterogeneity in individual capture probability. Conversely, the use of an appropriate MR study design which accommodates heterogeneity associated with capture-occasion varying covariates due to animals moving between 'states' (i.e. geographic sites) can provide insight into how animals are distributed in a particular environment and the status and connectivity of subpopulations. 2. The Multistate Closed Robust Design was chosen to investigate: 1) the demographic parameters of Indo-Pacific bottlenose dolphins (Tursiops aduncus) subpopulations in coastal and estuarine waters of Perth, Western Australia; and 2) how they are related to each other in a metapopulation. Using four years of year-round photo-identification surveys across three geographic sites, we accounted for heterogeneity of capture probability based on how individuals distributed themselves across geographic sites and characterized the status of subpopulations based on their abundance, survival and interconnection. 3. MSCRD models highlighted high heterogeneity in capture probabilities and demographic parameters between sites. High capture probabilities, high survival and constant abundances described a subpopulation with high fidelity in an estuary. In contrast, low captures, permanent and temporary emigration and fluctuating abundances suggested transient use and low fidelity in an open coastline site. 4. Estimates of transition probabilities also varied between sites, with estuarine dolphins visiting sheltered coastal embayments more regularly than coastal dolphins visited the estuary, highlighting some dynamics within the metapopulation. 6. Synthesis and applications. To date, bottlenose dolphin studies using mark-recapture approach have focussed on investigating single subpopulations. Here, in a heterogeneous coastal-estuarine environment, we demonstrated that spatially structured bottlenose dolphin subpopulations contained distinct suites of individuals and differed in size, demographics and connectivity. Such insights into the dynamics of a metapopulation can assist in local-scale species conservation. The MSCRD approach is applicable to species/populations consisting of recognizable individuals and is particularly useful for characterizing wildlife subpopulations that vary in their vulnerability to human activities, climate change or invasive species.
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008). in Muridae
Nesokia is sister to Bandicota and are nested in Rattus phylogenetically, making Rat- tus paraphyletic. Tarsomys, Limnomys, and Diplothrix are also phylogenetically in Rat- tus, and the clade is in need of focused re- vision at the generic level. Nesokia bunnui was originally described as a separate ge-nus, Erythronesokia, because it is morphologically very distinctive from N. indica. Type specimen was destroyed during the Iraq War, and a neotype was recently designated to replace it. Monotypic. Distribution. Tigris and Euphrates river valleys, SE Iraq. Descriptive notes. Head—body 230-260 mm, tail 205-270 mm, ear 18-21 mm, hindfoot 49-58 mm; weight 519 g. The Long-tailed Bandicoot Rat is larger than the Short-tailed Bandicoot Rat (N. indica). Pelage is soft and woolly, interspersed with harsher coarse hair and long black hairs near mid-back. Dorsum is fawn to ocherous red, washed with purple or chestnuton darker individuals. Hairs are basally slate-gray and distally rufous, occasionally with whitish or black tips. Muzzle is drab. Sides arefawn, with gray edge toward venter. Venteris whitish, extending onto cheeks where the same pattern from gray to fawn to dorsal pelage occurs. Feet are large and robust, being light brown and well-furred dorsally. Claws are amber on forefeet and dull brown on hindfeet; pollux is extremely small. Ears are moderately long and brownish, with no hair internally. Tail is ¢.82-104% of head-body length and deep brownish drab, interspersed with visible white hair. Skull is large and robust, similarly to the Short-tailed Bandicoot Rat. Habitat. Marsh and swamp land. Food and Feeding. No information. Breeding. No information. Activity patterns. The Long-tailed Bandicoot Rat is terrestrial, although it isfound in swampy and marshy areas and is probably amphibious. Movements, Home range and Social organization. No information. Status and Conservation. Classified as Endangered on The IUCN Red List. The Longtailed Bandicoot Rat is apparently rare and is known from very few specimens. Marsh and swamp habitats in which it is found were completely destroyed during the Iraq War by draining, war damage, and agricultural expansion. In recent years, flooding from Tigris and Euphrates rivers and high snow fall and melt haveresulted in partial restoration ofits native habitat, although restoration is not a complete. Populations are now probably highly fragmented. Bibliography. Al-Ansari et al. (2012), Al-Robaae & Felten (1990), Khajuria (1981), Krystufek et al. (2017), Musser & Carleton (2005), Richardson & Hussain (2006), Stuart (2008).
Replication package for: "Revisiting Event Study Designs: Robust and Efficient Estimation"
<p>This replication package contains the code and instructions necessary to replicate Borusyak, Kirill, Xavier Jaravel, and Jann Spiess. "Revisiting event study designs: Robust and efficient estimation." Forthcoming Review of Economic Studies (2023).</p>
Data from: From gestation to weaning: combining robust design and multi-event models unveils cost of lactation in a large herbivore
Open the record for dataset details and reuse information.
Data from: Applying the multistate capture-recapture robust design to characterize metapopulation structure
Open the record for dataset details and reuse information.
Data from: Making use of multiple surveys: estimating breeding probability using a multievent-robust design capture-recapture model
Open the record for dataset details and reuse information.
Data from: Separating mortality and emigration: modelling space use, dispersal and survival with robust-design spatial-capture-recapture data
Open the record for dataset details and reuse information.
Data from: Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels
Ligating adapters with unique synthetic oligonucleotide sequences (sequence tags) onto individual DNA samples before massively parallel sequencing is a popular and efficient way to obtain sequence data from many individual samples. Tag sequences should be numerous and sufficiently different to ensure sequencing, replication, and oligonucleotide synthesis errors do not cause tags to be unrecoverable or confused. However, many design approaches only protect against substitution errors during sequencing and extant tag sets contain too few tag sequences. We developed an open-source software package to validate sequence tags for conformance to two distance metrics and design sequence tags robust to indel and substitution errors. We use this software package to evaluate several commercial and non-commercial sequence tag sets, design several large sets (maxcount=7,198) of edit metric sequence tags having different lengths and degrees of error correction, and integrate a subset of these edit metric tags to polymerase chain reaction (PCR) primers and sequencing adapters. We validate a subset of these edit metric tagged PCR primers and sequencing adapters by sequencing on several platforms and subsequent comparison to commercially available alternatives. We find that several commonly used sets of sequence tags or design methodologies used to produce sequence tags do not meet the minimum expectations of their underlying distance metric, and we find that PCR primers and sequencing adapters incorporating edit metric sequence tags designed by our software package perform as well as their commercial counterparts. We suggest that researchers evaluate sequence tags prior to use or evaluate tags that they have been using. The sequence tag sets we design improve on extant sets because they are large, valid across the set, and robust to the suite of substitution, insertion, and deletion errors affecting massively parallel sequencing workflows on all currently used platforms.
Rational Design of 7-Azaindole-Based Robust Microporous Hydrogen-Bonded Organic Framework for Gas Sorption
Open the record for dataset details and reuse information.
Data from: Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.