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Table S3. List of Locustella sound recordings included in bioacoustic analysis surrounding description of the Taliabu Grasshopper-Warbler. The table provides information on sound library sources and sampling localities of recordings as well as raw data on all 11 bioacoustic parameters measured (see Supplementary Materials section SM3 for more details on parameters). Recordings whose source is labeled as "private recording" were obtained by colleagues and are available upon demand from the corresponding author.
<p>supplement to Rheindt, Frank E., Prawiradilaga, Dewi M., Ashari, Hidayat, Suparno, Gwee, Chyi Yin, Lee, Geraldine W. X., Wu, Meng Yue, Ng, Nathaniel S. R. (2020): A lost world in Wallacea: Description of a montane archipelagic avifauna. Science 367: 167-170, DOI: 10.1126/science.aax2146</p>
Text-fig. 2. Stratigraphic column of the Govone section with a detail of the sampled intervals on the right. CCS – Cassano Spinola Conglomerates; Gm and Gg – sedimentary cycles, respectively marl-dominated or gypsum-dominated; MES – Messinian Erosional Surface; MSC – Messinian Salinity Crisis; PLG – Primary Lower Gypsum; RLG – Resedimented Lower Gypsum. in Remains Of A Subtropical Humid Forest In A Messinian Evaporitebearing Succession At Govone, Northwestern Italy - Preliminary Results
Text-fig. 2. Stratigraphic column of the Govone section with a detail of the sampled intervals on the right. CCS – Cassano Spinola Conglomerates; Gm and Gg – sedimentary cycles, respectively marl-dominated or gypsum-dominated; MES – Messinian Erosional Surface; MSC – Messinian Salinity Crisis; PLG – Primary Lower Gypsum; RLG – Resedimented Lower Gypsum.
Text-fig. 3. Scanning electron micrographs (a, b) and synchrotron radiation X-ray tomographic microscopy orthoslices (c–e) of flower of Lambertiflora elegans gen. et sp. nov. from the Early Cretaceous Puddledock locality, Virginia, USA (holotype, PP53796, Puddledock sample 082). a) Flower in lateral view showing long pedicel and overlapping elongated tepals; b) Detail of flower showing overlapping elongated tepals; note the numerous holes indicating the position of probable secretory cells; c) Flower in longitudinal section showing overlapping elongated tepals, remains of probable poorly developed stamens or staminodes and probable poorly developed carpels on the central conical gynoecial region of the receptacle (cut between orthoslices xz0510 and 0570); d) Flower in longitudinal section (comparable to c) showing overlapping tepals, poorly developed stamens or staminodes, and probable poorly developed carpels on the central conical gynoecial region of the receptacle; note the prominent cavities from secretory cells scattered through the tissues (cut between orthoslice xz0560 and 0575); e) Flower in transverse section showing overlapping tepals, poorly developed stamens or staminodes, and remains of probable poorly developed carpels (cut between orthoslices xy1160 and 1180). Scale bars = 1 mm (a), 500 µm (b–e). in Multiparted, Apocarpous Flowers From The Early Cretaceous Of Eastern North America And Portugal
Text-fig. 3. Scanning electron micrographs (a, b) and synchrotron radiation X-ray tomographic microscopy orthoslices (c–e) of flower of Lambertiflora elegans gen. et sp. nov. from the Early Cretaceous Puddledock locality, Virginia, USA (holotype, PP53796, Puddledock sample 082). a) Flower in lateral view showing long pedicel and overlapping elongated tepals; b) Detail of flower showing overlapping elongated tepals; note the numerous holes indicating the position of probable secretory cells; c) Flower in longitudinal section showing overlapping elongated tepals, remains of probable poorly developed stamens or staminodes and probable poorly developed carpels on the central conical gynoecial region of the receptacle (cut between orthoslices xz0510 and 0570); d) Flower in longitudinal section (comparable to c) showing overlapping tepals, poorly developed stamens or staminodes, and probable poorly developed carpels on the central conical gynoecial region of the receptacle; note the prominent cavities from secretory cells scattered through the tissues (cut between orthoslice xz0560 and 0575); e) Flower in transverse section showing overlapping tepals, poorly developed stamens or staminodes, and remains of probable poorly developed carpels (cut between orthoslices xy1160 and 1180). Scale bars = 1 mm (a), 500 µm (b–e).
Text-fig. 1. Scanning electron micrographs of Mugideiriflora portugallica gen. et sp. nov. from the Early Cretaceous Catefica locality, Portugal (holotype, S174254, Catefica sample 150). a) Flower in oblique lateral view showing numerous broad tepals, numerous inwardly curved stamens and the flat floral receptacle with a conical gynoecial region; b–c) Flower in two different oblique apical views showing numerous broad laminar tepals and inwardly curved stamens surrounding the carpels; note cellular differences between outer (op) and inner (in) perianth parts, as well as bases of anthers, apparently with laterally to slightly dorsally placed pollen sacs (arrow heads); d) Detail of flower showing a cluster of poorly differentiated carpels in the center surrounded by elongated stamens; note grooves in the dorsal surface of the stamens indicating the position of the pollen sacs; e) Detail of flower showing the broad bases of the laminar tepals, rhomboidal stamen bases and poorly differentiated carpels; f) Detail of flower showing inwardly arched stamens and poorly differentiated carpels. Scale bars = 1 mm (a–c), 200 µm (d–f). in Multiparted, Apocarpous Flowers From The Early Cretaceous Of Eastern North America And Portugal
Text-fig. 1. Scanning electron micrographs of Mugideiriflora portugallica gen. et sp. nov. from the Early Cretaceous Catefica locality, Portugal (holotype, S174254, Catefica sample 150). a) Flower in oblique lateral view showing numerous broad tepals, numerous inwardly curved stamens and the flat floral receptacle with a conical gynoecial region; b–c) Flower in two different oblique apical views showing numerous broad laminar tepals and inwardly curved stamens surrounding the carpels; note cellular differences between outer (op) and inner (in) perianth parts, as well as bases of anthers, apparently with laterally to slightly dorsally placed pollen sacs (arrow heads); d) Detail of flower showing a cluster of poorly differentiated carpels in the center surrounded by elongated stamens; note grooves in the dorsal surface of the stamens indicating the position of the pollen sacs; e) Detail of flower showing the broad bases of the laminar tepals, rhomboidal stamen bases and poorly differentiated carpels; f) Detail of flower showing inwardly arched stamens and poorly differentiated carpels. Scale bars = 1 mm (a–c), 200 µm (d–f).
Text-fig. 5. Scanning electron micrographs (d–g) and synchrotron radiation X-ray tomographic microscopy orthoslices (a–c) of flowers of Atlantocarpus virginiensis gen. et sp. nov. (a–d: holotype, PP43780, Puddledock sample 156), Atlantocarpus sp. from the Early Cretaceous Buarcos locality (e, f: S105025, Buarcos sample 244) and receptacle of Atlantocarpus? from the Early Cretaceous Vale de Água locality (g: S101300, Vale de Água sample 141). a) Flower in lateral view showing scar from a single bract (br), attachment scars of tepals (t) and stamens (st) on the expanded basal portion of elongated receptacle and young carpels; b) Flower in lateral view showing expanded basal portion of the elongated receptacle and young carpels; c) Flower in longitudinal section showing expanded basal portion of the elongated receptacle and young carpels; note the irregular, possibly expanded stigmatic region (arrow heads), (orthoslice yz0340); d) Flower in lateral view showing attachment scars of tepals (t) and stamens (st) on the expanded basal portion of elongated receptacle and young carpels with possible grooved stigmatic regions (arrow heads); e) Flower in lateral view showing expanded basal portion of elongated receptacle and young carpels; f) Detail of flower in (e) showing in Multiparted, Apocarpous Flowers From The Early Cretaceous Of Eastern North America And Portugal
Text-fig. 5. Scanning electron micrographs (d–g) and synchrotron radiation X-ray tomographic microscopy orthoslices (a–c) of flowers of Atlantocarpus virginiensis gen. et sp. nov. (a–d: holotype, PP43780, Puddledock sample 156), Atlantocarpus sp. from the Early Cretaceous Buarcos locality (e, f: S105025, Buarcos sample 244) and receptacle of Atlantocarpus? from the Early Cretaceous Vale de Água locality (g: S101300, Vale de Água sample 141). a) Flower in lateral view showing scar from a single bract (br), attachment scars of tepals (t) and stamens (st) on the expanded basal portion of elongated receptacle and young carpels; b) Flower in lateral view showing expanded basal portion of the elongated receptacle and young carpels; c) Flower in longitudinal section showing expanded basal portion of the elongated receptacle and young carpels; note the irregular, possibly expanded stigmatic region (arrow heads), (orthoslice yz0340); d) Flower in lateral view showing attachment scars of tepals (t) and stamens (st) on the expanded basal portion of elongated receptacle and young carpels with possible grooved stigmatic regions (arrow heads); e) Flower in lateral view showing expanded basal portion of elongated receptacle and young carpels; f) Detail of flower in (e) showing
Text-fig. 1. Map of Germany with outline of North Rhine- Westphalia indicated; detailed map with sample locations (asterisks), motorways and major cities. in Everything Is A Question Of Time - Age Of Important Quaternary Palaeontological Finds From Westphalia
Text-fig. 1. Map of Germany with outline of North Rhine- Westphalia indicated; detailed map with sample locations (asterisks), motorways and major cities.
Text-fig. 5. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Holotype (S174178; Vale de Agua sample 141) in lateral view showing shape and cell pattern; remains of mounting media (¤). b) Cut volume rendering of seed (cut at yz0553) showing the slightly raised tissue immediately adjacent to the lower edge of the hilum (arrow head) and palisade-shaped cells of exotesta. c) Apical view of seed showing hilar depression (hi), position of micropylar slit (mi) and the slightly raised raphal ridge (ra). d) Seed in lateral view showing raised tissue immediately adjacent to the lower edge of the hilum (arrow head) (S174495, Vale de Água sample 300). e) Cut volume rendering (cut at yz0500) of the seed in (5d) showing the raised tissue (arrow head) immediately adjacent to the lower edge of the hilum and sclerenchyma cells of exotesta. f) Detail of seed in (5d) showing micropylar slit (mi), hilum (hi) and raised tissue (arrow head) immediately adjacent to the lower edge of the hilum. g, h) Seed in lateral view (g) and view towards raphe (h) showing seed shape, the raised tissue below hilum (arrow head) and the raphal ridge (ra); note pointed micropylar area (S174179, Vale de Água sample 141). i) Seed surface of seed in (5d) showing the raised outlines of the undulate anticlinal walls of the exotestal cells. Scale bars = 250 µm (a–e, g, h); 125 µm (f, i). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 5. Reyispermum parvum gen. et sp. nov. seeds from the Early Cretaceous Vale de Água locality, Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Holotype (S174178; Vale de Agua sample 141) in lateral view showing shape and cell pattern; remains of mounting media (¤). b) Cut volume rendering of seed (cut at yz0553) showing the slightly raised tissue immediately adjacent to the lower edge of the hilum (arrow head) and palisade-shaped cells of exotesta. c) Apical view of seed showing hilar depression (hi), position of micropylar slit (mi) and the slightly raised raphal ridge (ra). d) Seed in lateral view showing raised tissue immediately adjacent to the lower edge of the hilum (arrow head) (S174495, Vale de Água sample 300). e) Cut volume rendering (cut at yz0500) of the seed in (5d) showing the raised tissue (arrow head) immediately adjacent to the lower edge of the hilum and sclerenchyma cells of exotesta. f) Detail of seed in (5d) showing micropylar slit (mi), hilum (hi) and raised tissue (arrow head) immediately adjacent to the lower edge of the hilum. g, h) Seed in lateral view (g) and view towards raphe (h) showing seed shape, the raised tissue below hilum (arrow head) and the raphal ridge (ra); note pointed micropylar area (S174179, Vale de Água sample 141). i) Seed surface of seed in (5d) showing the raised outlines of the undulate anticlinal walls of the exotestal cells. Scale bars = 250 µm (a–e, g, h); 125 µm (f, i).
Text-fig. 11. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a, b) Holotype (S170238), seed in oblique (a) and lateral (b) view showing large triangular hilar scar (hi) and transverse micropylar slit (mi). c) Oblique view of seed showing slightly raised raphal area (S174352); remains of mounting media (¤). d) Details of holotype showing triangular hilum (hi) and transverse micropylar slit in the exotesta (mi). e) Cut volume rendering of holotype (cut at yz1170) through the median plane showing hilum (hi) and micropylar slit (mi) lined by radially expanded exotestal cells. Scale bars = 500 µm (a–c); 250 µm (d, e). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 11. Silutanispermum kvacekiorum gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a, b) Holotype (S170238), seed in oblique (a) and lateral (b) view showing large triangular hilar scar (hi) and transverse micropylar slit (mi). c) Oblique view of seed showing slightly raised raphal area (S174352); remains of mounting media (¤). d) Details of holotype showing triangular hilum (hi) and transverse micropylar slit in the exotesta (mi). e) Cut volume rendering of holotype (cut at yz1170) through the median plane showing hilum (hi) and micropylar slit (mi) lined by radially expanded exotestal cells. Scale bars = 500 µm (a–c); 250 µm (d, e).
Text-fig. 9. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0769) through the median plane of the seed (S174345) showing expanded exotestal cells (ex, arrow head) in the hilar region and well-preserved cellular nutritive tissue with an embedded tiny embryo (asterisk markes the margin of the embryo); note well-developed mesotesta (me) on the raphal side of seed. b) Longitudinal orthoslice (yz0750) in the median plane showing detail of micropylar part of seed with well-preserved exotesta (ex) and mesotesta (me) and tiny embryo with two rudimentary cotyledons (asterisks mark the margin of the cotyledons); note numerous granular bodies in the cellular nutritive tissue that are probably the remains of protein and lipid bodies. c) Transverse orthoslice (xy0311) through seed below hilum showing the bulging exotesta (arrow heads) (S174472); note that the exotestal cells in this region have thinner walls (arrows). d) Transverse orthoslice (xy0900) through the middle of a seed showing the uneven thickening of the anticlinal walls of the exotestal cells (ex), which are thicker towards the outside and very thin towards the inside; note also mesotesta (me) and the well-preserved cellular nutritive tissue (S174472). Scale bars = 500 µm (a, d); 250 µm (b, c). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 9. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (yz0769) through the median plane of the seed (S174345) showing expanded exotestal cells (ex, arrow head) in the hilar region and well-preserved cellular nutritive tissue with an embedded tiny embryo (asterisk markes the margin of the embryo); note well-developed mesotesta (me) on the raphal side of seed. b) Longitudinal orthoslice (yz0750) in the median plane showing detail of micropylar part of seed with well-preserved exotesta (ex) and mesotesta (me) and tiny embryo with two rudimentary cotyledons (asterisks mark the margin of the cotyledons); note numerous granular bodies in the cellular nutritive tissue that are probably the remains of protein and lipid bodies. c) Transverse orthoslice (xy0311) through seed below hilum showing the bulging exotesta (arrow heads) (S174472); note that the exotestal cells in this region have thinner walls (arrows). d) Transverse orthoslice (xy0900) through the middle of a seed showing the uneven thickening of the anticlinal walls of the exotestal cells (ex), which are thicker towards the outside and very thin towards the inside; note also mesotesta (me) and the well-preserved cellular nutritive tissue (S174472). Scale bars = 500 µm (a, d); 250 µm (b, c).
Text-fig. 4. Pazlia hilaris gen. et sp. nov. (a, b) from the Early Cretaceous Famalicão locality (sample 025), Portugal (holotype, S175096) and Pazliopsis reyi gen. et sp. nov. (c, d) from the Early Cretaceous Torres Vedras locality (sample 038), Portugal (S174614); Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (xy0984) through the median plane of the seed showing the strongly thickened sclerenchyma under the hilar scar (hi), micropylar slit (mi) and the raphe (ra); note cells of exotesta are almost equally tall on both raphal and anti-raphal sides of the seed and gradually become shorter towards the micropyle. b) Transverse orthoslice (xy0984) through middle of seed showing the thickened cells of the exotesta; note that cells of the exotesta are almost equally tall on both raphal and anti-raphal sides. c) Longitudinal orthoslice (yz0812) through apical part of seed in the median plane showing embryo with two rudimentary cotyledons (asterisks) and surrounding nutritive tissue; note the tiny cells of embryo with central structures we interpret as the fossilized remains of nuclei. d) Detail of (4c) showing tiny embryo with two rudimentary cotyledons (asterisks); nutritive tissue immediately surrounding the embryo is interpreted as endosperm (endo); whether there is any delimitation between this inner endosperm and the outer part of the nutritive tissues is not clear. Scale bars = 250 µm (a–c); 125 µm (d). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 4. Pazlia hilaris gen. et sp. nov. (a, b) from the Early Cretaceous Famalicão locality (sample 025), Portugal (holotype, S175096) and Pazliopsis reyi gen. et sp. nov. (c, d) from the Early Cretaceous Torres Vedras locality (sample 038), Portugal (S174614); Synchrotron radiation X-ray tomographic microscopy (SRXTM, orthoslices). a) Longitudinal orthoslice (xy0984) through the median plane of the seed showing the strongly thickened sclerenchyma under the hilar scar (hi), micropylar slit (mi) and the raphe (ra); note cells of exotesta are almost equally tall on both raphal and anti-raphal sides of the seed and gradually become shorter towards the micropyle. b) Transverse orthoslice (xy0984) through middle of seed showing the thickened cells of the exotesta; note that cells of the exotesta are almost equally tall on both raphal and anti-raphal sides. c) Longitudinal orthoslice (yz0812) through apical part of seed in the median plane showing embryo with two rudimentary cotyledons (asterisks) and surrounding nutritive tissue; note the tiny cells of embryo with central structures we interpret as the fossilized remains of nuclei. d) Detail of (4c) showing tiny embryo with two rudimentary cotyledons (asterisks); nutritive tissue immediately surrounding the embryo is interpreted as endosperm (endo); whether there is any delimitation between this inner endosperm and the outer part of the nutritive tissues is not clear. Scale bars = 250 µm (a–c); 125 µm (d).
Text-fig. 8. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025) (a, b, d, e), and the Vale de Água locality (sample 333) (c, f, g), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Smaller seed in lateral view showing the bulging region (arrow head) close to hilum (S174467). b) Cut volume rending (cut at yz1032) of seed in (8a) showing the expanded cells of exotesta immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and the well preserved nutritive tissue. c) Small seed in lateral view showing the bulging exotesta (arrow head) close to hilum (S175046). d, e) Larger seed in lateral (d) and raphal (e) view (S174035). f) Detail of seed in (8c) showing the micropylar slit (mi) above the hilum (hi) and bulging exotestal tissue (arrow head) in which the walls of the exotestal cells have straight anticlinal walls. g) Surface of seed in (8c) showing the raised undulate anticlinal walls of the exotestal cells. Scale bars = 500 µm (a–e); 250 µm (f); 125 µm (g). in Extinct Taxa Of Exotestal Seeds Close To Austrobaileyales And Nymphaeales From The Early Cretaceous Of Portugal
Text-fig. 8. Lusitanispermum choffatii gen. et sp. nov. seeds from the Early Cretaceous Famalicão locality (sample 025) (a, b, d, e), and the Vale de Água locality (sample 333) (c, f, g), Portugal; Synchrotron radiation X-ray tomographic microscopy (SRXTM, volume renderings). a) Smaller seed in lateral view showing the bulging region (arrow head) close to hilum (S174467). b) Cut volume rending (cut at yz1032) of seed in (8a) showing the expanded cells of exotesta immediately adjacent to the lower edge of the hilum (hi), micropyle (mi) and the well preserved nutritive tissue. c) Small seed in lateral view showing the bulging exotesta (arrow head) close to hilum (S175046). d, e) Larger seed in lateral (d) and raphal (e) view (S174035). f) Detail of seed in (8c) showing the micropylar slit (mi) above the hilum (hi) and bulging exotestal tissue (arrow head) in which the walls of the exotestal cells have straight anticlinal walls. g) Surface of seed in (8c) showing the raised undulate anticlinal walls of the exotestal cells. Scale bars = 500 µm (a–e); 250 µm (f); 125 µm (g).
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 12
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 12 contains stitched image montages of thin sections (selected areas) through the lung of patients C04 and C07 which were acquired by scanning electron microscopy. The images show alveolae with various degree of epithelial damage.</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 11
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 11 contains a stitched image montage of a thin section (selected area) through the lung of patient C05 which was acquired by scanning electron microscopy. The image shows a lung area with a dissolved alveolar architecture and a massive type-2-cell hyperplasia.</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 10
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 10 contains stitched image montages of thin sections (selected areas) through the lung of patient C08 which were acquired by transmission electron microscopy. Cells, infected with SARS-CoV-2 particles, are shown in overview (A, C) and detail (B, C).</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 14
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 14 contains stitched image montages of a thin section through the lung of patient C04 which were acquired by scanning electron microscopy. The file “Data_set_14.tif” contains a montage of the entire thin section while the other files contain selected areas of the section recorded at higher resolution.</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 09
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 09 contains stitched image montages of thin sections (selected areas) through the lung of patient C03 which were acquired by scanning electron microscopy (C03_A & C) or transmission electron microscopy (C03_B). The images show accumulation of cells and debris in the alveolar cavity.</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 08
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 08 contains stitched image montages of thin sections (selected areas) through the lung of patients C04 and C08 which were acquired by scanning electron microscopy (C04) or transmission electron microscopy (C08_A & B). The images show the pathological changes of the alveolar epithelium: Type-1-cells detachment from the basal membrane (C08_A & B) and type-2-cell hyperplasia (C04).</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 07
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 07 contains stitched image montages of thin sections (selected areas) through the lung of patients C04 to C06 which were acquired by scanning electron microscopy. The images show alveolae with different degree of structural modification: Intact alveolar septum (C06); alveolar septum with detached alveolar epithelium (C04); dissolved alveolar organization (C05).</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 06
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 06 contains a stitched image montage of the first and of the last semithin section from the analysis of patient C08, which was acquired by bright-field light microscopy.</p>
A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series – Data set 05
<p>We investigated six cryobiopsy samples from six deceased patients (patients C03 to C08 from Barisione et al. 2020 <a href="https://doi.org/10.1007/s00428-020-02934-1">doi.org/10.1007/s00428-020-02934-1</a>) by using thin section electron microscopy (Cortese et al. 2022 <a href="http://doi.org/10.1007/s00428-022-03308-5">doi.org/10.1007/s00428-022-03308-5</a>). A detailed description of the methods and the data set is provided in the download container.</p> <p>Data set 05 contains a stitched image montage of the first and of the last semithin section from the analysis of patient C07, which was acquired by bright-field light microscopy.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.