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6 results for “shrub willows”
Assembly and annotation of eleven Salix (shrub willow) genomes
<p>The shrub willows (<em>Salix</em> section <em>Vetrix</em>) are an emerging bioenergy crop in North America and Eurasia. However, genomics resources in this section are still quite limited, with only a few reference genomes available, despite many species in use in breeding programs. Here we present de novo assemblies and annotations of eleven shrub willow genomes from six species. Copy number variation of candidate sex determination genes within each genome was characterized and revealed remarkable differences in putative master regulator gene duplication and deletion. We also analyzed copy number and expression of candidate genes involved in floral secondary metabolism and identified substantial variation across genotypes, which can be used for parental selection in breeding programs. Lastly, we report on a genotype that produces only female descendants and identified gene presence/absence variation in the mitochondrial genome that may be responsible for this unusual inheritance.</p>
Assembly and annotation of eleven Salix (shrub willow) genomes
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Data from: The snow and the willows: earlier spring snowmelt reduces performance in the low-lying alpine shrub Salix herbacea
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Diploid and haploid assemblies and annotation of monoecious shrub willow (Salix purpurea), clone ID 94003
<p>The Salicaceae are dioecious perennials that utilize different sex determination systems. There is substantial interest in understanding the impacts of hybridization, speciation, and polyploidy on sex chromosome evolution. Here, a rare monoecious <em>S. purpurea</em> genotype, 94003, was assembled. Based on sequence alignments to dioecious and monoecious genomes, a 1.15 Mb sex-linked region on Chr15W was identified as absent in monecious plants. Inheritance of this structural variation is responsible for the loss of a male-suppressing function in what would otherwise be genetic females, resulting in monoecy or lethality, if homozygous.</p>
Diploid and haploid assemblies and annotation of monoecious shrub willow (Salix purpurea), clone ID 94003
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Transcriptome analysis of contrasting resistance to herbivory by empoasca fabae in two shrub willow species and their hybrid progeny
GEO Series GSE143616. Salix x rubra. 96 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.