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1,883 results for “sodium”

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zenodo44/100

Data for the publication "Sodium Triflate Water-in-Salt Electrolyte in Advanced Battery Applications: A First-principles Based Molecular Dynamics Study"

<p>The datasets 'CONTCAR_aiMLMD' and 'CONTCAR_AIMD' represent the final structures obtained from the aiMLMD and AIMD simulations, respectively. These simulations were conducted using VASP at T=333K and c=9.25 m.</p> <p>The datasets 'NP.rdf' and 'MSD_NP.xlsx' represent the radial pair distribution functions at different time steps and the time-dependent variations of mean squared displacement for sodium in 10 segments of the classical MD trajectory. The associated MD simulation was performed using a nonpolarizable force field in the LAMMPS package at T=333K and c=9.25 m. The file 'dataNP.lmp' includes the initial configuration for this simulation. The GROMOS parameters were employed for LJ interactions of sodium and all other force field parameters were set according to Table 1 in the manuscript.</p> <p>The datasets 'P.rdf' and 'MSD_P.xlsx,' respectively, represent the radial pair distribution functions at different time steps and the time-dependent variations of mean squared displacement for sodium in 10 segments of the classical MD trajectory. These data were obtained employing the Drude oscillator model in the LAMMPS package at T=333K and c=10 m. The file 'dataP.lmp' includes the initial configuration for this simulation. The simulation was conducted using the optimal force field parameters 'Sys. 1,' as described in table 3 of the manuscript.</p> <p>The second column in the files 'NP.rdf' and 'NP.rdf' represents the distance from sodium. The subsequent odd columns display the radial distribution functions for the Na-C, Na-F, Na-S, Na-O, Na-Na, Na-Hw, and Na-Ow pairs, while the even columns present the coordination numbers for the same atom pairs.</p>

opencc-by-4.0Jan 2024View details →
zenodo44/100

Source Data for Manuscript "Sodium salicylate improves detection of amplitude-modulated sound in mice"

<p>This repository contains the source data for our papers <strong>Sodium salicylate improves detection of amplitude-modulated sound in mice </strong>(van den Berg*, Wong*, Houtak, Williamson, Borst). The code to generate figure panels can be found in our github repository at https://github.com/aaronbwong/salicylateonam</p>

opencc-by-4.0Mar 2024View details →
zenodo44/100

Genome-wide association analyses identify novel Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility

<p>The Brugada syndrome GWAS summary statistics</p> <p>Brugada syndrome is a cardiac arrhythmia disorder associated with sudden death in young adults. With the exception of <em>SCN5A</em>, encoding the cardiac sodium channel Na<sub>V</sub>1.5, susceptibility genes remain largely unknown. We performed a genome-wide association meta-analysis comprising 2,820 unrelated cases with Brugada syndrome and 10,001 controls.</p> <p>&nbsp;</p>

opencc-by-4.0Dec 2021View details →
zenodo44/100

Changes in soil moisture and temperature modify the toxicity of sodium selenite and sodium selenate for Folsomia candida (Collembola) Willem 1902

<p>Effects of sublethal concentrations of selenite and selenate were tested on parameters of mortality, reproduction, growth, and oxidative stress parameters of <em>Folsomia candida</em> (Collembola) in case of different climate scenarios. The standard 20&deg;C and the increased 25&deg;C temperatures were combined with three different soil moisture conditions: drought, standard water content and increased water content.</p>

opencc-by-4.0May 2022View details →
zenodo44/100

Dataset for publication "Scaling of planar sodium-metal chloride battery cells to 90 cm2 active area"

<p><span lang="EN-US">Sodium-metal chloride batteries; high-temperature ZEBRA batteries; molten-salt batteries; scalable stationary energy storage; alkali-metal anode</span></p>

opencc-by-4.0May 2024View details →
zenodo44/100

Dataset for publication "Cell design strategies for sodium-zinc chloride (Na-ZnCl2) batteries, and first demonstration of tubular cells with 38 Ah capacity"

<p><span lang="EN-US">stationary energy storage; ZEBRA battery; high-temperature metal chloride battery; molten-salt battery; molten sodium anode.</span></p> <p>Measured data to recreate Figures 1-8 in the above manuscript.</p>

opencc-by-4.0Nov 2022View details →
zenodo44/100

Dataset for publication "Influence of precursor morphology and cathode processing on performance and cycle life of sodium-zinc chloride (Na-ZnCl2) battery cells"

<p>High-temperature sodium-metal battery; sodium-metal halide battery (ZEBRA); molten-salt battery; zinc battery for stationary energy storage; alkali metal anode.</p> <p>Datasets used in the above manuscript.&nbsp;</p>

opencc-by-4.0Aug 2023View details →
edi44/100

Sodium, chloride and specific conductance in stream water and groundwater in New Hampshire 1991, 2000 – 2021

Stream water was collected at weekly to monthly intervals at 29 stream sites in New Hampshire (USA). Ten of the stream sites were instrumented with high‐frequency sensors. Twenty-one of the stream sites (including 5 sensor sites) are in the Lamprey River Hydrologic Observatory (LRHO; Wymore et al 2021) and two stream sites were nearby the LRHO. Groundwater was collected from two riparian well fields (JF, 14 wells and WHB, 13 wells). Wells were installed in 2004 and sampled monthly through May 2007, then quarterly until December 2009, after which a subset (JF, 6 and WHB, 5) was generally sampled quarterly. Stream and groundwater samples span a 17-year collection period and were analyzed for sodium, chloride and specific conductance. Methods and findings are described in the associated Limnology and Oceanography Letters manuscript.

openCC (other)Feb 2022View details →
dryad40/100

Nutritional constraints on brain evolution: sodium and nitrogen limit brain size

Nutrition has been hypothesized as an important constraint on brain evolution. However, it is unclear whether the availability of specific nutrients or the difficulty of locating high quality diets limits brain evolution, especially over long periods of time. We show that dietary nutrient content predicted brain size across 42 species of butterflies. Brain size, relative to body size, was associated with the sodium and nitrogen content of a species' diet. There was no evidence that host plant apparency (measured by plant height) was related to brain evolution. The timing of diet shifts varied from 3.5 to 90 million years ago, but nutritional constraints did not lessen over time as species adapted to a diet. While nutrition was linked to overall brain volume, there was no evidence that nutrition was related to the relative size of individual brain regions. Lab rearing experiments confirmed the underlying assumption of most comparative studies that the majority of interspecific trait variation stems from species differences rather than an individual's current developmental environment. This study highlights a novel role of sodium and nitrogen in brain evolution, which is additionally interesting given current anthropogenic change in the availability of these nutrients.

opencc-zeroAug 2020View details →
zenodo40/100

Sodium [18F]Fluoride PET Can Efficiently Monitor In Vivo Atherosclerotic Plaque Calcification Progression and Treatment

<p>Dataset for the research article entitled &quot;Sodium [<sup>18</sup>F]Fluoride PET Can Efficiently Monitor <em>In Vivo&nbsp;</em>Atherosclerotic Plaque Calcification Progression and Treatment&quot; published in the MDPI journal Cells.</p>

opencc-byJan 2021View details →
zenodo40/100

Research data for "Predicting Dynamics from Structure in a Sodium Silicate Glass"

<p>This dataset supports the paper "Predicting Dynamics from Structure in a Sodium Silicate Glass".</p> <p>The following files are provided.</p> <p>File: dataset_800.zip</p> <p>- Pickle files for:</p> <ul> <li>400 Sodium silicate glass structures of 3000 atoms</li> <li>30 Trajectories sampled eight times at various timescales up to 1 ns for each if the 400 glass structures</li> </ul> <p>File: in.comb</p> <p>- Lammps inputfile used to generate simulation from with the data in dataset was sampled</p>

opencc-by-4.0Apr 2024View details →
zenodo40/100

Fig. 1 in Use of sodium chloride and zeolite during shipment of Ancistrus triradiatus under high temperature

Fig. 1. Linear regression between the number of Ancistrus triradiatus that maintained the swimming axis and time of exposure to hyperosmotic saline solution for control and zeolite groups.

opencc-by-4.0Oct 2011View details →
zenodo40/100

Particulate methylsulfonic acid (MSA), sodium and chloride concentrations from high-volume air filter samples over the Southern Ocean during austral summer of 2016/2017 on board the Antarctic Circumnavigation Expedition (ACE).

<p><strong>Dataset abstract</strong></p> <p>Aerosol particles come from a variety of sources: a look at the chemical composition gives insights on the particle origin. Ion chromatography was performed for aerosol particles smaller than 10 micrometers (PM10 inlet), giving concentrations of sodium and chloride, as well as particulate methylsulfonic acid (MSA). For this, aerosol particles where sampled on quartz fibre filters for 24 hours each. The sampled filters were stored at -20 degrees C on the research vessel, transported frozen back to the chemistry lab of TROPOS and analysed for main ions. Temporal coverage is from December 20, 2016 to March 20, 2017. We give 24-hour quality controlled particulate MSA, sodium and chloride concentrations in microgram per cubic meter for the Antarctic Circumnavigation Expedition (ACE) cruise over the Southern Ocean, as part of the ACE-SPACE project.</p> <p><strong>Dataset contents</strong></p> <ul> <li>ACESPACE_ particulate_MSA_Sodium_Chloride_PM10, data file, comma-separated values</li> <li>data_file_header, metadata, text format</li> <li>README.txt, metadata, text format</li> </ul>

openDec 2021View details →
zenodo40/100

Sodium binding stabilizes the outward-open state of SERT by limiting bundle domain motions

<p>Measured distances, angles, RMSD, RMSF, vestibule diameters and principal components along with the structural representations in pymol pse files and the manuscript images. The measurements have a 1ns time resolution.</p> <p>&nbsp;</p> <p>DATA_sodium_stabilize_SERT.zip<br> ├── fig1<br> │&nbsp;&nbsp; ├── fig1_v3.png<br> │&nbsp;&nbsp; ├── occ_3ions_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── occ_Cl_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── occ_ionless_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── out_3ions_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; ├── out_Cl_rmsf_TMH_fitted_250_500.xvg<br> │&nbsp;&nbsp; └── out_ionles_rmsf_TMH_fitted_250_500.xvg<br> ├── fig2<br> │&nbsp;&nbsp; ├── distances_n_angles_fig2.pse<br> │&nbsp;&nbsp; ├── fig2_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1b-TM8down.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1b-TM9up.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM1b-TM8down.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM1b-TM9up.dat<br> ├── fig3<br> │&nbsp;&nbsp; ├── fig3_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM3-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM3-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM9-TM8-TM6a.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM9-TM8-TM1b.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM9-TM8-TM6a.dat<br> ├── fig4<br> │&nbsp;&nbsp; ├── cluster_centr_250_500_concat_bundle-fit_bundle-measure_in_fig4.pse<br> │&nbsp;&nbsp; ├── fig4_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM1a-TM1b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM6b.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM1a-TM1b.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.TM6a-TM6b.dat<br> ├── fig5<br> │&nbsp;&nbsp; ├── concat_0_500_dt_RMSF_bundle_fit_bundle_measure_colored.pse<br> │&nbsp;&nbsp; ├── fig5_v3.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.concatenated_trajectories.rmsf_bundle_fitted_0_500_concat_protein.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.RMSD_fit-boundle_CA_measure-boundle_CA_preEQreference.xvg<br> ├── fig6<br> │&nbsp;&nbsp; ├── fig6_v5.png<br> │&nbsp;&nbsp; ├── occ_3ions_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── occ_Cl_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── occ_ionless_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_3ions_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_Cl_extreme_scaffoldFIT_bundleMEASURE1.pdb<br> │&nbsp;&nbsp; ├── out_Cl_extreme_scaffoldFIT_bundleMEASURE2.pdb<br> │&nbsp;&nbsp; ├── out_Cl_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; ├── out_ionless_projected_scaffoldFIT_bundleMEASURE.xvg<br> │&nbsp;&nbsp; └── scaffoldFIT_bundleMEASURE_global_covar_extrame1.pse<br> ├── fig7<br> │&nbsp;&nbsp; ├── fig7_v2.png<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.radii_refitted.dat<br> │&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.radii_refitted.dat<br> │&nbsp;&nbsp; └── out_apo_nosalt_ionless.rep5.radii_refitted.dat<br> └── Sfig1<br> &nbsp;&nbsp;&nbsp; ├── distances_n_angles_fig2.pse<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_3ions.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_Cl.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── occ_apo_nosalt_ionless.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_3ions.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_Cl.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep1.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep2.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep3.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep4.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM6a-TM8down.dat<br> &nbsp;&nbsp;&nbsp; ├── out_apo_nosalt_ionless.rep5.TM6a-TM9up.dat<br> &nbsp;&nbsp;&nbsp; └── Sfig1_v2.png</p> <p>&nbsp;</p>

opencc-by-4.0Jan 2022View details →
zenodo40/100

Data & R Scripts - Jönander et al. (2022) Single substance and mixture toxicity of dibutyl-phthalate and sodium dodecyl sulphate to marine zooplankton. Ecotoxicol. Environ. Saf.

<p>Data and R scripts associated with:</p> <p>J&ouml;nander, C., Backhaus, T., Dahll&ouml;f, I.&nbsp;(2022) Single substance and mixture toxicity of dibutyl-phthalate and sodium dodecyl sulphate to marine zooplankton. Ecotoxicol. Environ. Saf.</p>

opencc-by-4.0Mar 2022View details →
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A multicenter randomized phase 4 trial comparing Sodium Picosulphate plus Magnesium Citrate vs Polyethylene Glycol plus Ascorbic Acid for bowel PREparation before COLonoscopy. The PRECOL trial.

<p>This is the database for final analysis of the PRECOL clinical trial, whose abstract follows</p> <p>Background<strong>.</strong> Adequate bowel preparation before colonoscopy is crucial. Unfortunately, up to 25% of all colonoscopies have inadequate bowel cleansing.&nbsp; From a patient perspective, bowel preparation is a main obstacle for colonoscopy. Several low-volume bowel preparations have been formulated to provide more tolerable purgative solutions without loss of efficacy.</p> <p>Methods: In this phase 4, randomized, multicenter, two-arm trial, adult outpatients undergoing colonoscopy received either Sodium Picosulphate plus Magnesium Citrate (SPMC) or Polyethylene Glycol plus Ascorbic Acid (PEG-ASC) for bowel preparation. The primary aims were to test quality of bowel cleansing (primary endpoint, scored according the Boston Bowel Preparation Scale) and patient&rsquo;s acceptance (measured with 6 visual analogue scales). The study was open as for treatment assignment, and blinded for primary endpoint assessment that was done independently on videotaped colonoscopies by 2 endoscopists not aware of study arm. A sample size of 525 patients was calculated to recognize a difference of 10% in the proportion of successes between the arms with a two-sided alpha error of 0&middot;05 and 90% statistical power.</p> <p>Findings: overall 550 subjects (279 assigned to PEG-ASC and 271 assigned to SPMC) represented the analysis population. There was no statistically significant difference in the success rate according to BBPS: 94&middot;4% with PEG-ASC and 95&middot;7% with SPMC (P=0&middot;49). Acceptance and willing to repeat were significantly better for SPMC with all the scales. Compliance was less than full in 6&middot;6% and 9&middot;9% of cases with PEG-ASC and SPMC, respectively (P=0&middot;17). Nausea and meteorism were significantly more bothersome with PEG-ASC than SPMC. There were no serious adverse events in either group.</p> <p>Interpretation. SPMC and PEG-ASC are not different in terms of efficacy, but SPMC is better tolerated than PEG-ASC. SPMC could be used as alternative to low-volume PEG based purgative solutions for bowel preparation.</p> <p>Funding. This research had no financial support.</p> <p>ClinicalTrials.gov NCT01649674; EudraCT 2011&mdash;000587&mdash;10.</p>

opencc-by-4.0Aug 2022View details →
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Fig. 1 in First report of kdr mutations in the voltage-gated sodium channel gene in the arbovirus vector, Aedes aegypti, from Nouakchott, Mauritania

Fig. 1 The combinations of kdr point mutations S989P, V1016G, and F1534C in adult female Aedes aegypti mosquitoes in Nouakchott, Mauritania

opencc-by-4.0Dec 2023View details →
zenodo40/100

Sodium Fast Reactor Database

<p>This database contains reactor physic data gathered from high-fidelity sodium fast reactor&nbsp;MCNP models. Each reactor design contains values such as k-eff, beta-eff, sodium void coefficient, Doppler coefficient, etc. The data is stored as an h5 database and can easily be converted to a Pandas dataframe for manipulation.</p>

opencc-by-4.0Sep 2019View details →
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Figure 11 in All aspects of the toxic effects of lipopolysaccharide on rat liver and the protective effect of vitamin E and sodium selenite

Figure 11. DNA damage in rat liver exposed to LPS + VE and/or SS. (a) Control group, (b) VE, (c) SS, (d, e) LPS, (f) LPS + VE, (g) LPS + SS, and (h, i) LPS + VE + SS groups.

opencc-by-4.0Oct 2019View details →
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Figure 10 in All aspects of the toxic effects of lipopolysaccharide on rat liver and the protective effect of vitamin E and sodium selenite

Figure 10. Histological features of the apoptotic areas in the liver of the rats. A, B, C → Control; D, E, F → SS; G, H, I →VE; J, K, L → SS + VE; M, N, O → LPS; P, Q, R → LPS + SS; S, T, U, → LPS + VE; and V, W, X → LPS + SS + VE.

opencc-by-4.0Oct 2019View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record