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245 results for “soil datasets”
Dataset to Manuscript: Vertical mobility of pyrogenic organic matter in soils: A column experiment, Marcus Schiedung et al. (Biogeosciences)
<p>Dataset to manuscript: Schiedung, M., Bellè, S.-L., Sigmund, G., Kalbitz, K., and Abiven, S.: Vertical mobility of pyrogenic organic matter in soils: A column experiment, Biogeosciences, https://doi.org/10.5194/bg-17-6457-2020, 2020.</p> <p>All parameters and variables are described in "Var_names" files.</p>
Dataset to Schiedung et al. (2024): Millennial-aged pyrogenic carbon in high-latitude mineral soils
<p>Dataset to Schiedung et al. (2024, Communications Earth & Environment): Pyrogenic Carbon is Aged at Millennial Scale in High-Latitude Mineral Soils</p> <p>DOI: <a href="https://doi.org/10.1038/s43247-024-01343-5">10.1038/s43247-024-01343-5</a></p> <p>This repository includes the following files: </p> <p><strong><em>dd_all.csv</em> </strong>- Includes all data for the individual samples that are presented in the manuscript.</p> <p><strong><em>Var_names_dd_all.csv</em> </strong>- Describes all variables in <em>dd_all</em> with corresponding unit </p> <p><strong><em>dd_site_average.csv</em></strong> - Includes all data that has been determined on composite samples for each site or the average of all samples per site </p> <p><strong><em>Var_names_dd_site_average.csv</em></strong> - Describes all variables in <em>dd_site_average.csv</em> with corresponding unit</p> <p>All .csv use "," as separator. </p> <p>This data set is also connected to Schiedung et al. (2022, Catena <a href="https://doi.org/10.1016/j.catena.2022.106194"> https://doi.org/10.1016/j.catena.2022.106194</a> ) and the corresponding repository: <a href="../records/10609291">https://zenodo.org/records/10609291</a></p>
GHG Dataset for the frontiers publication "Soil Nitrous Oxide Emission and Methane Exchange from Diversified Cropping Systems in Pannonian Region"
<p>GHG Dataset used in the Frontiers Publication "Soil Nitrous Oxide Emission and Methane Exchange from Diversified Cropping Systems in Pannonian Region". Additionally including CO2 besides N2O and CH4. Includes 3 cropping seasons.</p> <p>The data is also available online on the GHG flux visualisation and calculation tool "gasflxvis": https://sae-interactive-data.ethz.ch/gasflxvis/</p> <p>Further details on the calulation are provided both on gasflxvis and the Frontiers publication. Calculation procedure according the following PLOS ONE publication: http://dx.doi.org/10.1371/journal.pone.0200876</p>
NEON distributed initial soil characterization dataset (DP1.10047.001) modified for statistical analysis of organic carbon and extractable metals in Hall and Thompson (2021)
We compiled National Ecological Observatory Network (NEON) datasets related to the initial distributed soil sampling effort and subsetted them (removed samples with missing values for certain variables, and several samples with extreme values) for use in statistical analyses to describe relationships between soil organic carbon (SOC) and metals measured in several soil chemical extractions. The NEON provisional data products we used were DP1.10047.001 and DP1.10008.001, which were subsequently combined by NEON as a single data product DP1.10047.001, “Soil physical and chemical properties, distributed initial characterization”. These datasets were used for the analyses reported in a manuscript by Hall and Thompson (2021) in the Soil Science Society of America Journal.
Dataset of Soil hydraulic properties of Valle Telesina (Italy)
<p>The dataset contain a .xls file with the hydraulic properties georeferenced of 47 soil profiles of the "Valle Telesina (Italy) site, according to the parametrization of the van Genuthen-Mualem model (van Genuchten, 1980). Moreover a zipped folder with the shape files for the same area is provided.</p> <p>Following there is the description of the methods applied for the soil hydraulic characterization:</p> <p>Undisturbed soil samples were collected from the horizons using cylindrical steel samplers (8.5 cm diameter and 12.0 cm high). In the laboratory, the samples were saturated by slowly wetting from the bottom in order to remove all the air entrapped in the soil. The maximum water content,θ<sub>0</sub>, was gravimetrically determined and the saturated hydraulic conductivity, ks, was measured by a falling-head permeameter. Then, the Wind method was applied to simultaneously determine the water retention and hydraulic conductivity functions by subjecting the soil samples to an evaporation process. After sealing the bottom surface to prevent drainage, during the evaporation process - at appropriate pre-set time intervals - the weight of the whole sample and the pressure head at three different depths were measured. An iterative procedure was applied for estimating the water retention curve from these measurements. Then, the instantaneous profile method was applied to determine the unsaturated hydraulic conductivity. θr, θs, α and n parameters were derived by fitting the soil water retention data; under the restriction m=l−l/n, τ and k<sub>0</sub> parameters were derived by fitting the hydraulic conductivity data. Details of the tests and overall calculation procedures are described in Basile et al. (2012). The parameters obtained in the laboratory were then scaled to better reproduce the field behaviour by following the procedure suggested by Basile et al. (2003; 2006). Finally, for the few soils having considerable stone content, a correction of θs and k<sub>0</sub>, to take into account the stoniness, was applied (Coppola et al., 2013).</p> <p>References:</p> <p>Van Genuchten, M. T. (1980). A closed-form equation for predicting the hydraulic conductivity of unsaturated soils. Soil Science Society of America Journal, 44(5), 892–898.</p> <p>Basile, A., Buttafuoco, G., Mele, G., & Tedeschi, A. (2012). Complementary techniques to assess physical properties of a fine soil irrigated with saline water. Environmental Earth Sciences,66(7), 1797–1807.</p> <p>Basile, A., Ciollaro, G., & Coppola, A.(2003). Hysteresis in soil water characteristics as a key to interpreting comparisons of laboratory and field measuredhydraulic properties.Water Resources Research, 39(12).</p> <p>Basile, A., Coppola, A., De Mascellis, R., & Randazzo, L. (2006). Scaling approach to deduce field unsaturated hydraulic properties and behavior from laboratory measurements on small cores. Vadose Zone Journal,5(3), 1005–1016.</p> <p>Coppola, A., Dragonetti, G., Comegna, A., Lamaddalena, N., Caushi, B., Haikal, M., & Basile, A. (2013). Measuring and modeling water content in stony soils. Soil and Tillage Research,128, 9–22.</p>
SM2RAIN test dataset with ASCAT and SMAP satellite soil moisture (plus ERA5 evapotranspiration)
<p>Are you looking for a research contest?</p> <p>Here [SM_RAIN_EVAP_1009points.nc] you can find a 5-year dataset at 1009 points in Italy, the United States, India and Australia of co-located in space and time:</p> <ol> <li>satellite soil moisture (from ASCAT, Wagner et al., 2013, doi:10.1127/0941-2948/2013/0399)</li> <li>evapotranspiration (from ERA5 reanalysis by ECMWF: https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=overview)</li> <li>ground-based rainfall.</li> </ol> <p>and a ~3-year dataset at the same points including soil moisture from SMAP (April-2015 --> December 2017) [SM_SMAP_ASCAT_ETERA5_Pobs_1009opints.nc]</p> <p>The dataset can be used for testing multiple approaches for rainfall estimation from soil moisture, as done in <a href="https://www.linkedin.com/feed/hashtag/?keywords=%23SM2RAIN">#SM2RAIN</a> algorithm (<a href="http://hydrology.irpi.cnr.it/research/sm2rain/">http://hydrology.irpi.cnr.it/research/sm2rain/</a>).</p> <p>The global dataset we have developed is available here: <a href="https://zenodo.org/record/3635932">https://zenodo.org/record/3635932</a></p> <p>The NetCDF file contains all the data, and the figures (PNG files) represent an example of the results we have obtained in the paper and of the new dataset including SMAP.</p> <p><strong>Reference</strong><br> Brocca, L., Filippucci, P., Hahn, S., Ciabatta, L., Massari, C., Camici, S., Schüller, L., Bojkov, B., Wagner, W. (2019). SM2RAIN-ASCAT (2007-2018): global daily satellite rainfall from ASCAT soil moisture. <em>Earth System Science Data</em>, 11, 1583–1601, doi:10.5194/essd-11-1583-2019. <a href="https://doi.org/10.5194/essd-11-1583-2019">https://doi.org/10.5194/essd-11-1583-2019</a>.</p> <p>For clarifications and support contact me at <a href="mailto:luca.brocca@irpi.cnr.it?subject=SM2RAIN%20test%20dataset">luca.brocca@irpi.cnr.it</a> </p>
Laboratory Dataset on Self-ignition of Carbon-Rich Soil
<p>The file attached contains a complete set of experimental data from carbon-rich soil self-heating ignition cubic basket experiments for a range of soil inorganic content (IC) ranging from 3% to 86%. The experiments were carried out in a thermostatically controlled oven with thermocouples for measuring the ambient and soil temperatures. The data reported includes the dates of experiments, volume of soil baskets being tested, oven ambient temperature, inorganic content present in the sample, bulk density of the soil and if the sample ignited or not. This data is in support of the journal paper:</p> <p>F. Restuccia, X. Huang, G. Rein, <strong>Self-ignition of Natural Fuels: Can Wildfires of Carbon-Rich Soil Start by Self-heating?</strong>, <em>Fire Safety Journal </em>2017, http://doi.org/10.1016/j.firesaf.2017.03.052.</p>
D4.1 Review on Accuracy of Proximal Soil Sensors Dataset
<p><span lang="EN-US">The dataset includes the raw data about PSS accuracy based on the root-mean-square error (RMSE) and wet chemistry analytical data on which we based our analysis, organized in a comma-separated value (CSV) file. A table with the metadata of the accuracy dataset is included in this document. A previous version of the dataset present in this supplementary has already been published in the Zenodo repository with the following associated DOI: <a href="https://doi.org/10.5281/zenodo.14035520">https://doi.org/10.5281/zenodo.14035520</a>. The current version updates the previous one due to incongruencies found after the upload. The PDF file contains a table that give information about the fields in the CSV.</span></p>
Dataset to: Organic carbon stocks, quality and prediction in permafrost-affected forest soils in North Canada (CATENA) - Version 2 (Corrected)
<p><strong>Version update: Coordinates were not correct in previsous version and have been corrected now in version 2</strong></p> <p> </p> <p>Dataset to the manuscript: Schiedung et al. (2022, Catena) Organic carbon stocks, quality and prediction in permafrost-affected forest soils in North Canada ( <a href="https://doi.org/10.1016/j.catena.2022.106194">https://doi.org/10.1016/j.catena.2022.106194</a> )</p> <p>Data files, variables and parameter are described in <em>Var_names_dd_all.csv</em> for all data on each sample and <em>Var_names_dd_composites.csv </em>for all data on composited samples per site and depth. DRIFT data and corresponding explenation are in <em>Schiedung_CATENA_DRIFT_v1.1.zip.</em></p> <p> </p> <p><strong> </strong></p>
Dataset for "Fertilizer value of dairy processing waste materials and contributions of soil microorganisms towards phosphorus uptake in grasses."
<p>This file includes the dataset used for the analysis of the fertilizer value from dairy processing waste materials and the contribution of soil microorganisms towards P uptake. More information in the linked future publication</p>
Dataset to manuscript: Soil organic carbon stocks and quality in small-scale tropical, sub-humid and semi-arid watersheds under shrubland and dry deciduous forest in southwestern India
<p>Raw data to the manuscript entitled "Soil organic carbon stocks and quality in small-scale tropical, sub-humid and semi-arid watersheds under shrubland and dry deciduous forest in southwestern India" by Severin-Luca Bellè, Jean Riotte, Muddu Sekhar, Laurent Ruiz, Marcus Schiedung and Samuel Abiven.</p> <p>Data files include all raw data of soil cores (20211111_Raw_data.zip), data measured on composited samples (20211111_Composite_data.zip) and DRIFT spectra (20211111_DRIFT_data.zip).</p> <p>Files ending with var_names are the README files.</p>
Input Dataset for Estimating Continuous Soil Water Retention Curves Using Physics-Informed Neural Networks
<p>This dataset was used as input to a physics-informed neural network (PINN) model developed to estimate continuous soil water retention curves (SWRCs). It includes basic soil properties such as particle-size distribution (sand, silt, clay), organic carbon content (OC), bulk density (BD), and measurements of soil water retention at various matric potentials. These inputs allow the model to learn the relationship between soil properties and water retention, via both data and embedded physical constraints. This data set consists of 4,200 Danish soil samples with measurements spanning the wet and dry ends of the SWRC. </p>
Dataset to Manuscript: Schiedung et al. (2023; SBB) Enhanced loss but limited mobility of pyrogenic and organic matter in continuous permafrost-affected forest soils.
<p>Dataset to Schiedung et al. (2023; SBB) Enhanced loss but limited mobility of pyrogenic and organic matter in continuous permafrost-affected forest soils.</p> <p>All published data is provided in the files "<strong>dd_</strong>". This includes:</p> <ul> <li>dd_cores: All data of soil cores and with depth</li> <li>dd_fractions: All data obtained from fractionation of the 0-3cm core layers</li> <li>dd_teabag: All data and mass losses of incubated teabags</li> <li>dd_temperature: All data and recorded soil temperatures</li> </ul> <p>All parameters and names are described in the corresponding file starting with "<strong>Var_names_</strong>". Details on methods and calculations are given in the manuscript and supporting information.</p> <p>NanoSIMS data is provided in the folder "<strong>dd_NanoSIMS.zip</strong>". This contains a file with descriptions of the provided tif-files "<strong>dd_NanoSIMS</strong>". Descriptions of the variables and parameters as well as further instructions are given in the file "<strong>Var_names_description_dd_NanoSIMS</strong>". Images and additional data can be requested by the corresponding author (marcusschiedung@gmail.com).</p> <p> </p> <p> </p>
Dataset of Sentinel-1 surface soil moisture time series at 1 km resolution over Southern Italy
<p>The dataset consists of a time series of the Sentinel-1 (S-1) surface soil moisture (SSM) product at 1 km spatial resolution validated in Balenzano et al. (2021 a) over the Southern Italy. The specifications of the S-1 SSM product are provided in Balenzano et al. (2021 b). The SSM time series was obtained in correspondence of the ascending (RON A146) S-1 Interferometric Wide swath (IW) acquisition dates from January 2015 to December 2018 with a temporal gap between consecutive of 6 days (when both S-1A and S-1B data are available) or 12 days. On each date (183 in total), two co-registered layers are provided: mean SSM [m3/m3] and its standard deviation [m3/m3], which provides the SSM uncertainty. The retrieval algorithm is a time series short term change detection (STCD) that is implemented in the “Soil MOisture retrieval from multi-temporal SAR data” (SMOSAR) code (Balenzano et al. 2013).</p>
1000 Soils Pilot Dataset, version 8, May 2025
<p>This record hosts data generated by the 1000 Soils Pilot. Data will be updated as more become available. Please see the most recent data upload for current data.</p> <p>A beta visualization tool is available for some data types at https://shinyproxy.emsl.pnnl.gov/app/1000soils. Please submit any suggestions or comments through the 'contact' tab. We are actively working to improve visualizations and value all feedback.</p> <p>Data completed include:</p> <ul> <li>Geochemistry, texture, respiration, and enzyme activities</li> <li>FTICR-MS organic matter chemistry</li> <li>Microbial biomass C and N</li> <li>TOC/TDN of water-extractable OM</li> <li>X-ray computed tomography (derived metrics available here, raw data available upon request)</li> <li>Metagenomes; a variety of data formats are available upon request</li> <li>Soil hydraulic properties</li> </ul> <p>Data in progress:</p> <ul> <li>LC-MS/MS in development, timeline TBD, inquire for status</li> </ul> <p>1000S_processed_BGC_summary.csv contains all available biogeochemical data; microbial biomass C and N; and TOC/TDN of water-extractable OM; and </p> <p>1000S_Tomography.xslx contains a summary of data generated via X-ray computed tomography.</p> <p>icr_v2_corems2.csv contains FTICR-MS data processed by CoreMS version 2. These data are merged by formula across instrument runs to enable cross-sample comparisons. Technical replicates are merged by retaining peaks present in 2 out of 3 replicates.</p> <p>1000Soils_Metadata_Site_Mastersheet_v1.csv contains site information.</p> <p>Soil Hydraulics_corrected_02042025.xlsx contains soil hydraulics information.</p> <p>Readme File_v4.xlsx is the readme file.</p> <p>Please contact the MONet project (monet.emsl@pnnl.gov) or Emily Graham (emily.graham@pnnl.gov) with questions.</p> <p>The following file and all raw data are available upon request:</p> <p>icr_by_mass_for_single_sample_analysis_only.csv contains FTICR-MS data processed by CoreMS and is intended for usage in the calculation of biochemical transformations within samples only. These data are not acceptable for cross-sample comparison of masses because they are from multiple instrument runs.</p> <p>For more information, please see: https://www.emsl.pnnl.gov/monet and https://sc-data.emsl.pnnl.gov/monet</p> <p>Acknowledgment: </p> <p>Soil data were provided by the Molecular Observation Network (MONet) at the Environmental Molecular Sciences Laboratory (<a href="https://ror.org/04rc0xn13" rel="noreferrer">https://ror.org/04rc0xn13</a>), a DOE Office of Science user facility sponsored by the Biological and Environmental Research program under Contract No. DE-AC05-76RL01830. The work (proposal: 10.46936/10.25585/60008970) conducted by the U.S. Department of Energy, Joint Genome Institute (<a href="https://ror.org/04xm1d337" rel="noreferrer">https://ror.org/04xm1d337</a>), a DOE Office of Science user facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. </p> <p>The Molecular Observation Network (MONet) database is an open, FAIR, and publicly available compilation of the molecular and microstructural properties of soil. Data in the MONet open science database can be found at <a href="https://www.emsl.pnnl.gov/monet">https://sc-data.emsl.pnnl.gov/</a>.</p>
Accompanying dataset; 'Agroforestry enhances biological activity, diversity and soil-based ecosystem functions in mountain agroecosystems of Latin America: A meta-analysis.'
<p>The database created as part of the meta-analysis is designed to facilitate the comparison of biological activity, diversity (BIAD), and ecosystem functions (EFs) between agroforestry systems (AFS) and other land-use types. It incorporates data extracted from selected studies, each record comprising a mean value, sample size, and a variance measure to compute standard deviation. The database also categorizes data according to 22 explanatory variables, including geographical coordinates, climate classification, soil type, AFS classification, and more, to characterize the sites and management systems involved. This detailed classification enables a nuanced analysis of how different factors might influence the BIAD and EFs in the context of AFS. The database supports the meta-analysis by allowing for the estimation of effect sizes using response ratios, which compare the relative difference in BIAD and EFs between AFS and other land uses. Data extraction from primary studies was meticulous, employing both direct and indirect methods such as graph digitizing software, and missing data were supplemented using reliable sources or direct communication with the original study authors. The comprehensive nature of this database ensures that the analysis can account for a wide range of variables that may affect the outcomes of interest in the meta-analysis. </p><p>For an in-depth exploration of the study's findings and methodology, refer to the comprehensive meta-analysis available in Global Change Biology (2024), entitled "<i>Agroforestry Enhances Biological Activity, Diversity, and Soil-Based Ecosystem Functions in Mountain Agroecosystems of Latin America: A Meta-Analysis</i>."</p>
Global soil type dataset for WRF-ARW model, based on HWSD version 2
<p>Global soil type dataset, based on HWSD ("Harmonized World Soil Database", version 2.0), suitable for meteorological model WRF-ARW.</p> <ul> <li>spatial resolution: 30 arc seconds by 30 arc seconds (about 1km)</li> <li>original data (HWSD 2.0) <ul> <li><a href="https://s3.eu-west-1.amazonaws.com/data.gaezdev.aws.fao.org/HWSD/HWSD2_RASTER.zip">https://s3.eu-west-1.amazonaws.com/data.gaezdev.aws.fao.org/HWSD/HWSD2_RASTER.zip</a></li> <li><a href="https://s3.eu-west-1.amazonaws.com/data.gaezdev.aws.fao.org/HWSD/HWSD2_DB.zip">https://s3.eu-west-1.amazonaws.com/data.gaezdev.aws.fao.org/HWSD/HWSD2_DB.zip</a></li> <li>https://gaez.fao.org/pages/hwsd</li> <li>documentation: Nachtergaele, Freddy, et al. Harmonized world soil database version 2.0. Food and Agriculture Organization of the United Nations, 2023. https://www.fao.org/3/cc3823en/cc3823en.pdf</li> </ul> </li> <li>the original 7 soil layers (0–20 cm, 20–40 cm, 40–60 cm, 60–80 cm, 80–100 cm, 100–150 cm and 150–200 cm) have been remapped to the 2 layers required by WRF (topsoil 0-30 cm, botsoil 30-200 cm)</li> <li>the original Soil Mapping Units (SMU) have been remapped to the 16 soil categories used by WRF: <ul> <li>the depth-weighted averages of the content of clay, silt and sand lead to 12 texture-based categories (Sand, Loamy sand, Sandy loam, Silt loam, Silt, Loam, Sandy clay loam, Silty clay loam, Clay loam, Sandy clay, Silty clay, Clay), as defined by USDA;</li> <li>category "Organic material" is assigned where the average content of organic carbon exceeds the threshold of 25%;</li> <li>where the content of clay, silt and sand is not defined, HWSD special categories are mapped to the WRF last 3 categories, as follows: <ul> <li>"Water bodies" to "Water", </li> <li>"Rock outcrops" and "Rocky sublayers" to "Bedrock", </li> <li>"Land ice and glaciers", "Dunes/shifting sands", "Salt flats", and "Other" to "Other"</li> </ul> </li> </ul> </li> </ul> <p>The dataset is provided in three ways:</p> <ol> <li>two global files (SoilType_depth<T>to<B>cm.tif), one for each layer; format is GeoTIFF, compatible with <a href="https://github.com/openwfm/convert_geotiff" target="_blank" rel="noopener"><em>convert_geotiff</em></a>, a commandline utility for converting data from GeoTIFF to geogrid format used by WRF;</li> <li>16 tiles, 8 for each layer, each covering 90 degrees by 90 degrees (SoilType_depth<T>to<B>cm_lon<W>to<E>deg_lat<S>to<N>deg.tif); format is GeoTIFF;</li> <li>two compressed folders, hwsd_toplayer.zip and hwsd_bottomlayer.zip, each including 648 tiles in binary format and an "index" ASCII file, following the Geogrid data format and naming convention, as described <a href="https://www2.mmm.ucar.edu/wrf/users/tutorial/presentation_pdfs/202101/duda_wps_advanced.pdf">here</a>.</li> </ol> <p>Soil categories are coded as follows</p> <table> <tbody> <tr> <td><strong>code</strong></td> <td><strong>category</strong></td> </tr> <tr> <td>1</td> <td>sand</td> </tr> <tr> <td>2</td> <td>loamy sand</td> </tr> <tr> <td>3</td> <td>sandy loam</td> </tr> <tr> <td>4</td> <td>silt loam</td> </tr> <tr> <td>5</td> <td>silt</td> </tr> <tr> <td>6</td> <td>loam</td> </tr> <tr> <td>7</td> <td>sandy clay loam</td> </tr> <tr> <td>8</td> <td>silty clay loam</td> </tr> <tr> <td>9</td> <td>clay loam</td> </tr> <tr> <td>10</td> <td>sandy clay</td> </tr> <tr> <td>11</td> <td>silty clay</td> </tr> <tr> <td>12</td> <td>clay</td> </tr> <tr> <td>13</td> <td>organic material</td> </tr> <tr> <td>14</td> <td>water</td> </tr> <tr> <td>15</td> <td>bedrock</td> </tr> <tr> <td>16</td> <td>other</td> </tr> </tbody> </table> <p> </p>
PEATGRIDS: Mapping global peat thickness and carbon stock via digital soil mapping approach, dataset
<p>PEATGRIDS: a dataset containing the first peat thickness and carbon stock maps estimated over peatlands area across the globe at ~1 km x ~1 km resolution. Carbon stock was calculated across all depths of the predicted peat thickness, multiplied by peat bulk density (BD) and carbon content (CC) across five depths: 0-15 cm, 15-30 cm, 30-60 cm, 60-100 cm, and 100-200 cm. Mapping effort was performed using quantile random forest regression based on remotely sensed data and environmental covariates, including topography, climate, soil properties, and land cover. The maps cover areas potentially as peatlands according to the UNEP's global peatland map obtained from the <a title="Global Peat Database" href="https://greifswaldmoor.de/global-peatland-database-en.html" target="_blank" rel="noopener">Global Peat Database</a>. We may update this dataset in the future, please consider using the latest version. </p> <p>Note: This version (2.0.1) clarifies the metric units for carbon stock per area in the previous version (2.0). </p>
Dataset underlying the publication: "Organic contaminants in bio-based fertilizer treated soil: Target and suspect screening approaches" DOI: 10.1016/j.chemosphere.2023.139261
<p>Dataset underlying the publication "Organic contaminants in bio-based fertilizer treated soil: Target and suspect screening approaches" DOI: 10.1016/j.chemosphere.2023.139261.</p>
Dataset Natural plant disease suppressiveness in soils extends to insect pest control
<p>This dataset is related to the study "<strong>Natural plant disease suppressiveness in soils extends to insect pest control</strong>" (Harmsen et al., 2024) and contains the raw data described therein. </p> <p>Sequencing data used in this study has been deposited in the NCBI Sequence Read Archive under the BioProject number <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1075215/">PRJNA1075215</a>.</p> <p>The scripts used to analyze the data generated in the study are available at <a href="https://github.com/nhrmsn/SuppressSoil-Data">GitHub</a>. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.