Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,775
datasets available to search
ShareScore release 0.7.1
Dataset results
2,775 results for “sponges”
Supplementary Files for "Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals"
<p>This repository hosts supplemental files for the Manuscript "Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals" by Ruperti, et al., 2024.</p> <ul> <li><strong>Suppl_File_wreath_domain_model.pdb</strong>: AlphaFold3 model for the <em>C. prolifera</em> MAFp3 wreath domain (aa 33 - 317)</li> <li><strong>Suppl_File_MAFAP1_Cterm_model.cif</strong>: AlphaFold3 model for the <em>C. prolifera</em> MAFAP1 C-terminal domain, region 1 and 2</li> <li><strong>Suppl_File_AFInteracting_hmm.hmm</strong>: HMM sequence profile of AF-interacting region of C. prolifera proteins</li> <li><strong>XXX_Foldseek.zip</strong>: Foldseek raw search results, separated by target databases (Swissprot, AFDB, CATH50)</li> </ul>
Sampling metadata for the publication: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem "
<p>Meta data of sampling location, time and depth of eDNA samples used in the study: "Deep-sea sponge derived environmental DNA analysis reveals demersal fish biodiversity of a remote Arctic ecosystem". As well as taxonomic identification of sponges, their microbial abundance and growth form.</p>
Geographic range size and species morphology determines the organization of sponge host-guest interaction networks across tropical coral reefs (Raw data)
<p>Datasets for the analysis developed in the Article "<em><strong>Geographic range size and species morphology determines the organization of sponge host-guest interaction networks across tropical coral reefs</strong></em>". For more information, please refer to the original publication.</p> <p>Network_Structural_Index_&_SpogeTraits.csv <- Structural Index for the sponge-dwelling fauna network, sponge accumulated area and sponges’ morphology.</p> <p>NWTA_CoralReefs_Sponges_ interactions.csv <- Relationship between host sponges and guest fauna in the Northwester Atlantic coral reefs</p> <p>NWTA_CoralReefs_Sponge_reacords.csv <- Sponge species incidence records in the Northwester Atlantic coral reefs</p> <p>sponges_morphological_description.csv <- Sponge morphological standardization</p> <p>Network.html <- Interactive sponge-dwelling fauna network</p> <p>Enjoy!<br> </p>
Community composition, richness, and density of endobionts from two sponge species in Crete, Greece, June 2021
These data was collected as part of a study titled "The “Single Hotel” hypothesis – Does sponge abundance affect endobionts’ diversity?" that was conducted in the island of Crete, Greece in June 2021. It includes collection of 30 sponge specimens of the common species (Agelas oroides and Sarcotragus foetidus) via SCUBA diving, their dissection and removal and identification of all endobionts living withing them (macroinvertebrates). The diversity of endobionts was then calculated and correlated with sponge properites (such as volume), and the sponges area and site of collection.
Fig. 3 in Rare sponges from marine caves: discovery of Neophrissospongia nana nov. sp. (Demospongiae, Corallistidae) from Sardinia with an annotated checklist of Mediterranean lithistids
Fig. 3. Neophrissospongia nana nov. sp., holotype MSNG 54599, spicular complement. A. Dichotriaene. B. Cladome of a tubercled dichotriaene (top view). C. Streptaster/amphiaster microscleres with tubercles. D. Cladome of a smooth dichotriaene (top view). E. Dicranoclone desma. F. Styles/sub-tylostyles.
Fig. 8 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 8. Umborotula bogorensis (Weber, 1890). Possible type locality in a pond of the Bogor Botanical Garden (Java). Picture after Arndt (1932).
Fig. 9. A in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 9. A. Part of the type encrusting on a plant, 1901:10:22:1 of Ephydatia blembingia = Umborotula bogorensis, the Natural History Museum of London. B. Six slides ZMA POR 01551 representing the remains of the type material of Umborotula bogorensis preserved in the Institute for Systematics and Population Biology of the University of Amsterdam.
Fig. 4 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 4. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. SEM micrographs. a. Gemmules in a group within skeletal meshes. Gemmular theca with almost flat foraminal area. Several free gemmuloscleres also scattered in the skeletal network. b. Gemmule (basal area, top view) with developed outer layer covering the distal rotules of radial gemmuloscleres. c–d. Gemmules showing foraminal area (central); outer layer is lacking (top view). e. Gemmule without outer layer showing partially dissociated gemmuloscleres in the pneumatic layer and the smooth inner layer of compact spongin. Foramen simple, with short collar. f. Gemmule (cross section) with foraminal tubule and radial gemmuloscleres in the trilayered theca. g. Outer layer at the theca surface with distal rotules of gemmuloscleres. h. Distal rotules of gemmuloscleres without outer layer. i. Proximal rotules of gemmuloscleres adhering to the inner layer of the theca. j–k. Foraminal area supported by a network of spongin fibres and a rosette of radial gemmuloscleres. l. Architecture of trilayered gemmular theca with radial gemmuloscleres and spiny shafts (cross section). m–o. Fibrous network of thin spongin fibres in the pneumatic layer (detail, cross section).
Fig. 5 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 5. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. Spicular complement (SEM) of gemmules and skeleton. a. Gemmulosclere birotules armed by large spines. b. Rotule of a gemmulosclere (top view). c. Shafts of gemmuloscleres with large scattered spines. d. Rotules of gemmulosclere (lateral view). e. Megascleres (oxeas) of the skeleton. f. Megascleres, tips. g. Megascleres, shafts.
Fig. 7 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 7. Historical trend of faunistic and taxonomic investigations focusing on Umborotula bogorensis (Weber, 1890). The papers mentioning this species are 40. The 15 papers (box) reporting new records are indicated by asterisks. See also Fig. 1 (map) and Appendix.
Fig. 6 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 6. Umborotula bogorensis (Weber, 1890) (as Ephydatia bogorensis Weber, 1890 and E. blembingia Evans, 1901). a–c. Diagnostic morphotraits from plates in original descriptions. d–f. Gemmule and spicules (LM) of E. blembingia from the type, BMNH 1901:10:22:1−2. a–b. Modified from Evans (1901). c. Modified from Weber (1890).
Fig. 1 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 1. Biogeographic pattern of the monotypic genus Umborotula with published records. The new record from the Sakaerat Biosphere Reserve in NE Thailand (14°30ʹ15.83″ N, 101°55ʹ03.64″ E) is indicated by the green square. For question marks, see text in the historical accounts section. The unpublished records are not reported (see Appendix). Red dots indicate the type localities of Ephydatia bogorensis Weber, 1890 and E. blembingia Evans, 1901.
Fig. 3 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 3. Umborotula bogorensis (Weber, 1890) from the Sakaerat Biosphere Reserve, NE Thailand. a. sampling site along a temporary streamlet and pool; arrows indicate the microhabitat of the two recorded specimens. b. Gemmule carpets (arrows) during low water level (dry season). c. Encrusting sponge with gemmules on a stick from the pool.
Fig. 2 in Rare freshwater sponges of Australasia: new record of Umborotula bogorensis (Porifera: Spongillida: Spongillidae) from the Sakaerat Biosphere Reserve in Northeast Thailand
Fig. 2. Map of Sakaerat Biosphere Reserve in Thailand (modified from Trisurat 2010). The new record of Umborotula bogorensis (Weber, 1890) is indicated by a star.
Fig. 2 in Rare sponges from marine caves: discovery of Neophrissospongia nana nov. sp. (Demospongiae, Corallistidae) from Sardinia with an annotated checklist of Mediterranean lithistids
Fig. 2. Neophrissospongia nana nov. sp., holotype MSNG 54599, photomicrographs of the skeletal architecture and spicular complement. A-C. Subectosomal skeletal network of dicranoclone desmas. D. Dichotriaene (top) and simple triaene (bottom, arrows) radially arranged in the ectosome with tubercled cladomes. E. Articulation among desmas with scattered styles/sub-tylostyles in the sub-ectosome. F. Detail showing the arrangement of silica in dicranoclone desmas (cross section) and styles/sub-tylostyles (arrows). G-I. Streptaster/amphiaster microscleres with spines/tubercles.
Fig. 1 in Rare sponges from marine caves: discovery of Neophrissospongia nana nov. sp. (Demospongiae, Corallistidae) from Sardinia with an annotated checklist of Mediterranean lithistids
Fig. 1. Habitus of the cave-dwelling Mediterranean Neophrissospongia nana nov. sp. from north-western Sardinia. A. In situ plate-like growth form in the type locality Grotta delle Terrazze (photo by R. Barbieri), B. Holotype MSNG 54599 (top view) (photo by G. Delitala).
Fig. 20 in Adriatic calcarean sponges (Porifera, Calcarea), with the description of six new species and a richness analysis
Fig. 20. Species richness in the Adriatic Sea divided by sectors.: 1–9 species;: 10–17 species;: 18–26 species.
Fig. 19 in Adriatic calcarean sponges (Porifera, Calcarea), with the description of six new species and a richness analysis
Fig. 19. Maximum likelihood tree based on partial 28S rDNA sequences of Calcaronea. Bayesian posterior probabilities (PP) and bootstrap values (BS) are given near the branches (PP/BS; when>0.50). Adriatic specimens are written in bold. Adriatic specimens obtained in this study are marked with an asterisk. The detached tree shows the only difference in the topology of the ML and Bayesian analyses.
Fig. 18 in Adriatic calcarean sponges (Porifera, Calcarea), with the description of six new species and a richness analysis
Fig. 18. Maximum likelihood tree based on ITS1-5.8S-ITS2 rDNA sequences of Calcaronea. Bayesian posterior probabilities (PP) and bootstrap values (BS) are given near the branches (PP/BS; when>0.50).
Fig. 17 in Adriatic calcarean sponges (Porifera, Calcarea), with the description of six new species and a richness analysis
Fig. 17. Maximum likelihood tree (ML) based on partial 28S rDNA sequences of Calcinea. Bayesian posterior probabilities (PP) and bootstrap values (BS) are given near the branches (PP/BS; when>0.50). Adriatic species are written in bold. Adriatic specimens obtained in this study are marked with an asterisk.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.