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Dataset results
12 results for “stem count”
Tree regeneration after fire: Delta 1994 burn surveys, pre-fire stem counts and basal areas, for species other than black spruce
Data for this study were collected in 2001 and 2002 by Jill Johnstone (University of Alaska Fairbanks) and Eric Kasischke (University of Maryland). Sites were located within the perimeter of the 1994 burn southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West. Sites were selected from satellite classifications prepared by Eric Kasischke to represent different levels of burn severity and post-fire vegetation canopy greenness (NDVI). Site selection was constrained by road access, and only areas where all trees had been killed by the fire were selected. At each site, a central point was located in an area of visually homogeneous vegetation. Five parallel transects, each 50 m long, were laid out as follows: 1) the first transect started at the central point and followed a randomly-selected compass direction, 2) two additional transects were established parallel to the first, but at a random distance from the central transect up to 25 m distant. Vegetation was sampled in a 2-m wide belt centered on each transect, and soil samples were made at intervals along the transect line. Vegetation measurements included: a) basal diameters of all pre-fire trees greater than 1.3 m in height, b) counts of all post-fire tree seedlings, and c) basal diameters of tree seedlings and willows, measured in a randomly chosen 5x2 m portion of each transect. General notes were made on visual percent cover of different vegetation growth forms at the site. Destructive measurements of tree seedlings and willows made in 2001 were used to develop allometric equations to predict dry biomass from basal diameter. Measurements of soil organic layer depth were made at 5 m intervals with the use of a spade to excavate small chunks of sod. At one randomly-selected sample point per transect, a 10x10 cm sample of the organic layer was collected for bulk density measurements. Bulk density samples were dried in a 60degC oven for 48 hours and then w
Tree regeneration after fire: Delta 1994 burn surveys, pre-fire stem counts and basal areas, for black spruce
Data for this study were collected in 2001 and 2002 by Jill Johnstone (University of Alaska Fairbanks) and Eric Kasischke (University of Maryland). Sites were located within the perimeter of the 1994 burn southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West. Sites were selected from satellite classifications prepared by Eric Kasischke to represent different levels of burn severity and post-fire vegetation canopy greenness (NDVI). Site selection was constrained by road access, and only areas where all trees had been killed by the fire were selected. At each site, a central point was located in an area of visually homogeneous vegetation. Five parallel transects, each 50 m long, were laid out as follows: 1) the first transect started at the central point and followed a randomly-selected compass direction, 2) two additional transects were established parallel to the first, but at a random distance from the central transect up to 25 m distant. Vegetation was sampled in a 2-m wide belt centered on each transect, and soil samples were made at intervals along the transect line. Vegetation measurements included: a) basal diameters of all pre-fire trees greater than 1.3 m in height, b) counts of all post-fire tree seedlings, and c) basal diameters of tree seedlings and willows, measured in a randomly chosen 5x2 m portion of each transect. General notes were made on visual percent cover of different vegetation growth forms at the site. Destructive measurements of tree seedlings and willows made in 2001 were used to develop allometric equations to predict dry biomass from basal diameter. Measurements of soil organic layer depth were made at 5 m intervals with the use of a spade to excavate small chunks of sod. At one randomly-selected sample point per transect, a 10x10 cm sample of the organic layer was collected for bulk density measurements. Bulk density samples were dried in a 60degC oven for 48 hours and then w
Marsh plant species stem counts for Rowley River tidal creeks associated with long term fertilization experiments, Rowley and Ipswich, MA.
Marsh plant species stem counts for Rowley River tidal creeks associated with long term fertilization experiments, Rowley and Ipswich, MA. The TIDE project aims to simulate eutrophication on a large scale by the addition of NO3- aiming to reach 70µM concentrations from May to September every year during the growing season. This fertilization of the marsh has been going on at Sweeney Creek since the 2004 growing season through 2012 and at Clubhead Creek in 2005 and from 2009 till 2012. The reference creeks, West and Nelson, have been sampled in pair with the nutrient enriched creeks.
Gene expression counts from induced Pluripotent Stem Cells
<p><strong>File description:</strong></p> <ol> <li> <p>Gene-level counts using the gtf file from the release 34 of GENCODE <a href="https://www.gencodegenes.org/human/release_34">https://www.gencodegenes.org/human/release_34</a></p> </li> <li> <p>Split counts spanning from one exon to another using an annotation-free algorithm, therefore capturing new splice sites</p> </li> <li> <p>Non-split counts covering exon-intron boundaries</p> </li> <li> <p>Sample annotation describing each sample from the dataset</p> </li> <li> <p>Description file with global information from the dataset</p> </li> </ol> <p><strong>Use: </strong>The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired-end specifications match. Afterwards, the workflow DROP can be used to compute expression and splicing outliers (<a href="https://github.com/gagneurlab/drop">https://github.com/gagneurlab/drop</a>).</p> <p><strong>Maintainer: </strong>Vicente A. Yépez, <a href="mailto:yepez@in.tum.de">yepez@in.tum.de</a></p> <p><strong>URL:</strong> <a href="https://github.com/gagneurlab/drop/">https://github.com/gagneurlab/drop/</a></p> <p> </p> <p><strong>Title: </strong>induced Pluripotent Stem Cells<br> <strong>Number of samples:</strong> 330<br> <strong>Tissue:</strong> iPSCs<br> <strong>Organism:</strong> Homo sapiens<br> <strong>Genome assembly:</strong> hg19<br> <strong>Gene annotation:</strong> gencode34<br> <strong>Disease:</strong> None<br> <strong>Strand specific:</strong> True<br> <strong>Paired end:</strong> True<br> <strong>Dataset contact:</strong> Marc Bonder, marcj89 at gmail.com</p> <p><strong>Citation:</strong> Cite both the resource using Zenodo's citation and the publication under References</p>
Effects of Hyperbaric Oxygen (HBO) on Blood Count Recovery After Autologous Hematopoietic Stem Cell (HSPC) Transplant for Multiple Myeloma
ClinicalTrials.gov study NCT03398200. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Single cell transcriptomic profiling of day 113 patient-specific pluripotent stem cell-derived alveolar epithelial type 2 cells expressing the SFTPCI73T mutation and their gene-edited corrected counte
GEO Series GSE160799. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Single cell transcriptomic profiling of day 114 patient-specific pluripotent stem cell-derived alveolar epithelial type 2 cells expressing the SFTPCI73T mutation and their gene-edited corrected counte
GEO Series GSE160800. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Bulk RNA-seq count matrices from manuscript: "Therapeutic efficacy of intracerebral hematopoietic stem cell gene therapy in an Alzheimer's disease mouse model"
<p>Gene expression profile of microglia-like cells in the central nervous system (CNS) after transplantation of hematopoietic stem/progenitor cells (HSPC). </p> <p>Different cell subsets and delivery routes are tested to induce a robust and exclusive engraftment of HSPCs and their progeny in the CNS of mice transplant recipients.</p>
Umbilical Cord Clamping Methods and Stem Cell Counts in Preterm Infants
ClinicalTrials.gov study NCT07385326. IPD Sharing: NO. Countries: 1. Publications: 0.
Higher Infused Lymphocyte Counts Improve Antibody Response to Immunization After Autologous Stem Cell Transplantation
ClinicalTrials.gov study NCT00889278. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Comparing Mesenchymal Stem Cell Counts in Unilateral vs. Bilateral Posterior Superior Iliac Spine Bone Marrow Aspiration
ClinicalTrials.gov study NCT03014037. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Study of the Impact of CD34+ Cell Dose on Absolute Lymphocyte Count Following High-Dose Therapy and Autologous Stem Cell Transplantation for Relapsed and Refractory Diffuse Large B-cell Lymphoma (DLBC
ClinicalTrials.gov study NCT02570542. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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