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ShareScore release 0.9.0
Dataset results
20 results for “tRNA-seq”
A robust method for measuring aminoacylation through tRNA-Seq
<p>Raw data and code for processing and recreating plots shown in the associated article.</p> <p>The gzipped tar ball was split into 512 mb packs to enable easy upload/download.</p> <p>To download with <code>zenodo_get</code> run the command:</p> <p><code>pip3 install zenodo_get</code></p> <p><code>zenodo_get -r 10778311</code></p> <p>To merge and unzip run the command:</p> <p><code>cat tRNA-charge-seq.tar.gz.part-* | gunzip -c > tRNA-charge-seq.tar</code></p> <p><code>tar -xvf tRNA-charge-seq.tar</code></p>
High-Fat Diet Driven Post-Operative Colon Cancer Recurrence is Dependent upon Genetic Susceptibility to Deoxycholic Acid [tRNA-seq]
GEO Series GSE288276. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
tRNA-seq and YAMAT-seq profiling the expressions of tRNA-derived fragments and tRNAs in plants
GEO Series GSE154165. Sorghum bicolor; Glycine max; Hordeum vulgare; Triticum aestivum; Setaria italica; Zea mays; Arabidopsis thaliana. 13 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The tRNA Gm18 Methyltransferase TARBP1 Promotes Hepatocellular Carcinoma Progression via Metabolic Reprogramming of Glutamine [tRNA-seq]
GEO Series GSE236368. Homo sapiens. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Dynamic changes in tRNA modifications and abundance during T-cell activation [tRNA-seq]
GEO Series GSE165537. Mus musculus. 30 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Mammalian queuosine tRNA modification impacts codon usage preferences to enhance cell proliferation and MHC-II expression [BMDC_0v100Q_tRNA-seq]
GEO Series GSE284148. Mus musculus. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing.
5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos [tRNA-seq]
GEO Series GSE181683. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Pathogenic CLP1 p.R140H mutation alters mRNA processing in human motor neurons (tRNA-seq)
GEO Series GSE183871. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Transfer RNA pools in human cells are controlled by selective gene expression [tRNA-Seq]
GEO Series GSE227927. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Threonine fuels glioblastoma through YRDC-mediated codon-biased translational reprogramming (tRNA-Seq)
GEO Series GSE245043. Homo sapiens. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparative tRNA-seq for rapid profiling of tRNA modifications in a non-model organism
GEO Series GSE147614. Escherichia coli; Vibrio cholerae. 16 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Altered translation elongation contributes to key hallmarks of aging in killifish brain (tRNA-Seq)
GEO Series GSE277509. Nothobranchius furzeri. 8 samples. Type: Other.
Dynamics of the zebrafish tRNAome during the maternal-to-zygotic transition [tRNA-Seq]
GEO Series GSE241754. Danio rerio. 18 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Manipulation of the human tRNA pool reveals distinct tRNA sets that act in cellular proliferation or cell cycle arrest [tRNA-seq]
GEO Series GSE163609. Homo sapiens. 40 samples. Type: Other.
A giant virus creates a subcellular environment to overcome the codon-tRNA mismatch [tRNA-seq]
GEO Series GSE276080. Acanthamoeba castellanii. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Near-cognate tRNAs increase the efficiency and precision of pseudouridine-mediated readthrough of premature termination codons [tRNA-seq]
GEO Series GSE237630. Homo sapiens. 26 samples. Type: Non-coding RNA profiling by high throughput sequencing.
tRNA-seq of DUS1L knockout and wild-type A375 human melanoma cells
GEO Series GSE312811. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
tRNA-seq of Arabidopsis leaves during pattern-triggered immunity
GEO Series GSE171411. Arabidopsis thaliana. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genomic adaptation underlies nutrient-driven reprogramming in malaria parasite [tRNA-Seq time series]
GEO Series GSE226631. Plasmodium falciparum. 18 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genomic adaptation underlies nutrient-driven reprogramming in malaria parasite [tRNA-Seq starvation]
GEO Series GSE226630. Plasmodium falciparum. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.