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32 results for “taxonomic effort”
Data and script: Reduced enumeration effort, but not coarse taxonomic resolution, is sufficient to represent beta diversity patterns of stream benthic diatoms
<p>This is a dataset on benthic diatom communities sampled in 90 riffles (the local communities) within nine near-pristine subtropical streams (each stream represented a metacommunity) in southeast subtropical Brazil. </p> <p>In addition to the dataset, we also provide the R code used to investigate whether reduced enumeration efforts (i.e., subsets of counted valves per sample) and the identification to the genus level are sufficient to recover patterns in the species composition and in beta diversity of benthic diatom metacommunities.</p>
Figure 3 in How many species of Mollusca are there in Brazil? A collective taxonomic effort to reveal this still unknown diversity
Figure 3. Distribution of 3,552 valid species of Mollusca and malacologists (=taxonomists) by region of Brazil and the possible correlation with socioeconomic indicators. Only the authors of this paper were counted (international authors excluded). (GDP) Gross Domestic Product, (HEI) Higher Education Institutions.
Figure 2. A in How many species of Mollusca are there in Brazil? A collective taxonomic effort to reveal this still unknown diversity
Figure 2. A small fraction of the diversity of shapes and colours of the Brazilian malacofauna: (A) Obeliscus agassizi Pilsbry, 1906, photo by L. Charles, ~4 cm long, terrestrial gastropod, Achatinidae; (B) Ischnochiton striolatus (Gray, 1828), 3 cm long, polyplacophoran, Ischnochitonidae; (C) Phidiana lynceus Bergh, 1867, 17 mm long, marine gastropod, Nudibranchia; (D) Octoporia octoporosa (Allen & Morgan, 1981, ~3 mm long, SEM image, marine bivalve, Cuspidariidae; (E) Eurytellina punicea (Born, 1778), ~70 mm long, marine bivalve, Tellinidae; (F) Hyperaulax ramagei (Smith, 1980), ~4.2 mm long, terrestrial gastropod, Odontostomidae; (G) Anatoma campense Pimenta & Geiger, 2015, ~3 mm long, SEM image; marine gastropod, Anatomidae; (H) Phyllocaulis boraceiensis Thomé, 1972, ~16 cm long, terrestrial gastropod, Veronicellidae; (I) Anodontites trapesialis (Lamarck, 1819), 20 cm long, freshwater bivalve, Mycetopodidae; (J) Anadara chemnitzi (Philippi, 1851), ~5 cm long, marine bivalve, Arcidae; (K) Neritina zebra (Bruguière, 1792), 22 mm long, marine gastropod, Neritidae; (L) Rhinus heterotrichus (S. Moricand, 1836), ~2.2 cm long, terrestrial gastropod, Simpulopsidae.
Figure 1. A in How many species of Mollusca are there in Brazil? A collective taxonomic effort to reveal this still unknown diversity
Figure 1. A small fraction of the diversity of shapes and colours of the Brazilian malacofauna: (A) Gaza compta Simone & Cunha, 2006, 19 mm long, marine gastropod, Margaritidae; (B) Pomacea maculata Perry, 1810, ~45 mm long, freshwater gastropod, Ampullariidae; (C) Omalonyx convexus (Heynemann, 1868), 2 cm long, terrestrial gastropod, Succineidae; (D) Gadila pandionis (Verrill & Smith, 1880), 11 mm long, scaphopod, Gadilidae; (E) Eulima bifasciata d'Orbigny, 1841, 8.1 mm long – marine gastropod, Eulimidae; (F) Eucallista purpurata (Lamarck, 1818), ~45 mm long, marine bivalve, Veneridae; (G) Mactrella janeiroensis (E.A. Smith, 1915), 27.7 mm long, marine bivalve, Mactridae; (H) Octopus insularis Leite & Haimovici, 2008, photo by C. Sampaio, ~80 mm long – cephalopod, Octopodidae; (I) Megalobulimus oblongus (Müller, 1774), ~118 mm long, terrestrial gastropod, Strophocheilidae; (J) Biomphalaria glabrata (Say, 1818), ~15 mm long, freshwater gastropod, Planorbidae; (K) Cardiomya minerva Lima, Oliveira & Absalão, 2020, 4.3 mm long, SEM image, marine bivalve, Cuspidariidae; (L) Corbula patagonica d'Orbigny, 1846, ~14 mm long, marine bivalve, Corbulidae; (M) Scutopus variabilis Passos, Corrêa & Miranda, 2021, ~12 mm long, aplacophoran, Caudofoveata; (N) Chicoreus brevifrons (Lamarck, 1822), ~40 mm long, marine gastropod, Muricidae.
Making The Taxonomic Effort: Data on Index Fungorum and IPNI new species and new combinations author gender
<p>Data on plant and fungal names and new combinations extracted in 2018 from the International Plant Names Index (IPNI) and Index Fungorum (IF) on names published from 1931 onwards. The gender of the authors of the names and combinations have been assigned from another data set on Zenodo here:</p> <p><strong>Lindon, Heather, Gardiner, Lauren, Vorontsova, Maria, & Brady, Abigail. (2020). Gendered Author List International Plant Names Index 2020 (Version 2) [Data set]. Zenodo. <a href="https://doi.org/10.5281/zenodo.3911077">https://doi.org/10.5281/zenodo.3911077</a></strong></p> <p>The set of data here was used for an analysis of names and new combinations published by women for a paper in the Linnean Society entitled 'Making the Taxonomic Effort' Published April 2023 https://www.linnean.org/our-publications.</p>
Supplementary material 1 from: Touroult J, Stéphane B (2014) Insects of French Guiana: a baseline for diversity and taxonomic effort. ZooKeys 434: 111-130. https://doi.org/10.3897/zookeys.434.7582
How to access, cite and contribute to the TAXREF species database?: Explanation note: This file explains who contributed to the species database and give links for downloading the taxonomic database.
Supplementary material 2 from: Touroult J, Stéphane B (2014) Insects of French Guiana: a baseline for diversity and taxonomic effort. ZooKeys 434: 111-130. https://doi.org/10.3897/zookeys.434.7582
Total species richness estimations for 68 taxonomic groups in French Guiana: Explanation note: Estimated and extrapolated species richness for 68 taxonomic groups in French Guiana and comparative figures for two well-known faunas. These taxa are used to extrapolate the total number of species in French Guiana given in Table 4.
A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing.
Open the record for dataset details and reuse information.
Figures 7-13 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 7-13 Epirhyssa ghesquierei female (http://mus.utu.fi/ZMUT.5853), a species found in Uganda. 7 Habitus 8 face and clypeus 9 frons 10 hypostomal flange 11 mesopleuron dorsal margin 12 apical horn of metasoma 13 tergites 1–7. Scale bars: 0.5 mm (8–13), 1 mm (7).
Figures 68-71 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 68-71 Epirhyssa villemantae female (holotype). This species was not found in Uganda. 68 Habitus 69 hypostomal flange 70 mesopleuron dorsal margin 71 apical horn of metasoma. Figure 68 is from van Noort (2019).
Figures 72-75 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 72-75 Megarhyssa babaulti female (holotype). This species was not found in Uganda. 72 Habitus 73 mesopleuron dorsal margin 74 hypostomal flange 75 apical horn of metasoma. Figure 72 is from van Noort (2019), 73–75 courtesy of MNHN (Agnièle Touret-Alby).
Figures 64-67 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 64-67 Epirhyssa gavinbroadi female (holotype). We treat this species as a synonym of E. uelensis in this work. 64 Habitus 65 hypostomal flange 66 mesopleuron dorsal margin 67 apical horn of metasoma. Figure 64 is from van Noort (2019).
Figures 57-63 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 57-63 Epirhyssa uelensis female (http://mus.utu.fi/ZMUT.2520), a species found in Uganda. 57 Habitus 58 face and clypeus 59 frons 60 hypostomal flange 61 mesopleuron dorsal margin 62 apical horn of metasoma 63 tergites 1–7. Scale bars: 0.5 mm (58–63), 1 mm (57).
Figures 50-56 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 50-56 Epirhyssa tombeaodiba female (http://mus.utu.fi/ZMUT.5663, 52: http://mus.utu.fi/ZMUT.3234), a species found in Uganda. 50 Habitus 51 face and clypeus 52 frons 53 hypostomal flange 54 mesopleuron dorsal margin 55 apical horn of metasoma 56 tergites 1–7. Scale bars: 0.5 mm (51–56), 1 mm (50).
Figures 46-49 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 46-49 Epirhyssa shaka female (holotype). This species was not found in Uganda. 46 Habitus 47 hypostomal flange 48 mesopleuron dorsal margin 49 apical horn of metasoma. Figure 46 is from van Noort (2019).
Figures 3-6 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 3-6 Epirhyssa brianfisheri female (holotype, SAM–HYM–P048018). This species was not found in Uganda. 3 Habitus 4 hypostomal flange 5 mesopleuron dorsal margin 6 apical horn of metasoma. Figure 3 is from van Noort (2019).
Figures 39-45 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 39-45 Epirhyssa quagga female (holotype http://mus.utu.fi/ZMUT.5788), a new species from Uganda. 39 Habitus 40 face and clypeus 41 frons 42 hypostomal flange 43 mesopleuron dorsal margin 44 apical horn of metasoma 45 tergites 1–7. Scale bars: 0.5 mm (40–45), 1 mm (39).
Figures 32-38 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 32-38 Epirhyssa overlaeti male (http://mus.utu.fi/ZMUT.1280) and female (34: http://mus.utu.fi/ZMUT.2291, 37: http://mus.utu.fi/ZMUT.5766), a species found in Uganda. 32 Habitus 33 face and clypeus 34 frons 35 hypostomal flange 36 mesopleuron dorsal margin 37 apical horn of metasoma 38 tergites 1–7. Scale bars: 0.5 mm (33–38), 1 mm (32).
Figures 25-27 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figures 25-27 Epirhyssa maynei male (25: holotype, 26–27: SAM–HYM–P049437). This species was not found in Uganda. 25 Habitus 26 hypostomal flange 27 mesopleuron dorsal margin. Figure 25 is from van Noort (2019).
Figure 1 from: Hopkins T, Roininen H, van Noort S, Broad GR, Kaunisto K, Sääksjärvi IE (2019) Extensive sampling and thorough taxonomic assessment of Afrotropical Rhyssinae (Hymenoptera, Ichneumonidae) reveals two new species and demonstrates the limitations of previous sampling efforts. ZooKeys 878: 33-71. https://doi.org/10.3897/zookeys.878.37845
Figure 1 Diagnostic characters for the thirteen known Afrotropical rhyssine species. The figure shows the frons median carinae (A converge, B diverge, C absent), frons lateral carinae (A present, B absent), hypostomal flange (D wider than second maxillary palp, E narrower than or comparable to second maxillary palp), subalar prominence (F flanged, G no flange), mesopleuron margin (H flanged, G no flange) and female apical horn (I ellipse, J half-ellipse). Not shown are the epicnemial carina (laterally absent, only just reaches the mesopleuron, reaches high onto the mesopleuron), areolet (present, absent) and tergite 3 structure (mostly striate, mostly punctate, mostly smooth). The images are of http://mus.utu.fi/ZMUT.5766, http://mus.utu.fi/ZMUT.2520 (A, F), http://mus.utu.fi/ZMUT.5853 (B, D, H, J), http://mus.utu.fi/ZMUT.5788 (C, E, I) and http://mus.utu.fi/ZMUT.5663 (G). Image F has been flipped horizontally.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.