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9 results for “tef1”
FIG. 2. — The tef1 in Russula (Basidiomycota, Russulales, Russulaceae) subsection Roseinae "down under"
FIG. 2. — The tef1 phylogeny of Russula subsection Roseinae Singer ex Sarnari placing both New Caledonian species (blue rectangle). Type specimens are indicated in bold.
Fig. 2 Maximum likelihood tree inferred from the combined cmdA, tef1 in New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia
Fig. 2 Maximum likelihood tree inferred from the combined cmdA, tef1, tub, rpb1, and rpb2 sequence datasets of the Fusarium fujikuroi species complex (FFSC) including eight Indonesian isolates (indicated in blue). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to Fusarium nirenbergiae (CBS 744.97) and F. oxysporum (CBS 716.74).
FIGURE 1. Maximum likelihood tree reconstructed from tef1 in Trichoderma orarium (Hypocreales): a new species from Taiwan
FIGURE 1. Maximum likelihood tree reconstructed from tef1 sequences. The newly described species is displayed in blue bold. We indicated bootstrap values at the nodes based on 1000 replicates only exceeding 50%. Bar scale represents 0.01 substitutions per nucleotide position. T. inhamatum and T. bannaense were used as outgroup. The tef1 sequence accession numbers are provided in parentheses following the strain numbers. "T" denotes type strains.
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1 in Combination of morphological and molecular data support Pestalotiopsis eleutherococci (Sporocadaceae) as a new species
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1-α, and tub2 dataset of Pestalotiopsis species. The tree is rooted with Truncatella laurocerasi (ICMP 11214) and T. angustata (CBS 144025). The asterisk at P. jesteri indicates its ambiguous status on Index Fungorum (2022). The type delivered sequences are indicated in bold and marked with T. The new isolates are in blue. The asterisk at P. intermedia indicates a misidentification.
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 in Trichoderma changiae (Hypocreales), a new species isolated from a native orchid in Taiwan
FIGURE 1. Phylogenetic tree reconstructed from concatenated rpb2 and tef1 sequences using Maximum-likelihood analysis. The new species Trichoderma changiae is highlighted in bold blue. Bootstrap values above 50% from RAxML-HPC2 on XSEDE (left) and posterior probabilities above 0.95 from Bayesian analysis (right) are displayed at the nodes. The scale bar represents 0.05 substitutions per nucleotide position. Trichoderma vulgatum was used as the outgroup. "T" denotes type strains.
FIGURE 1. Maximum parsimony reconstructed from the combined sequences RPB2 and TEF1 in New species of Trichoderma in the Harzianum, Longibrachiatum and Viride clades
FIGURE 1. Maximum parsimony reconstructed from the combined sequences RPB2 and TEF1, with the newly described species displayed in boldface. MPBP above 50% (left) and BIPP above 90% (right) are given at the nodes.
FIGURE 2. Phylogram generated from maximum likelihood analysis resulting from the combined ITS, tef1 and tub2 in Interesting Botryosphaeria (Botryosphaeriaceae) associated with Magnolia species in Thailand: Additions of two new host records with their lifestyles
FIGURE 2. Phylogram generated from maximum likelihood analysis resulting from the combined ITS, tef1 and tub2 sequence dataset. Related sequences of Botryosphaeria were obtained from Zhang et al. (2021). Cophinforma eucalypti (MFLUCC 11-0425) was selected as the outgroup taxon. Bootstrap values for maximum likelihood equal to or greater than 60% and bayesian posterior probabilities equal to or greater than 0.95 are placed above the branches. The newly generated sequences are indicated in red. Type and ex-type strains are in black bold. Species names and strain accession numbers are followed by the lifestyle (orange), the isolation source or host species (green) and country of origin (blue). The accepted species names (according to Zhang et al. 2021) are indicated to the left of each clade. The scale bar represents the expected number of changes per site. The tree was rooted to Cophinforma eucalypti (MFLUCC 11-0425). END: Endophytic; PAT: Pathogenic; SAP: Saprobic; UNK: Unknown.
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