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168 results for “thermal adaptation”
Effect of Warming on Thermal Adaptation of Soil Microbial Growth Traits at Harvard Forest 2013-2023
Adaptation of soil microbes due to warming from climate change has been observed, but it remains unknown what microbial growth traits are adaptive to warming. We studied bacterial isolates from the Harvard Forest Long-Term Ecological Research site, where field soils have been experimentally heated to 5ºC above ambient temperature with unheated controls for thirty years. We hypothesized that Alphaproteobacteria from warmed plots have (1) less temperature sensitive growth rates; (2) higher optimum growth temperatures; and (3) higher maximum growth temperatures compared to isolates from control plots. We made high-throughput measurements of bacterial growth in liquid cultures over time and across temperatures from 22-37ºC in 2-3ºC increments. We estimated growth rates by fitting Gompertz models to the growth data. Temperature sensitivity of growth rate, optimum growth temperature, and maximum growth temperature were estimated by the Ratkowsky 1983 model and a modified Macromolecular Rate Theory (MMRT) model. To determine evidence of adaptation, we ran phylogenetic generalized least squares tests on isolates from warmed and control soils. Our results showed evidence of adaptation of higher optimum growth temperature of bacterial isolates from heated soils. However, we observed no evidence of adaptation of temperature sensitivity of growth and maximum growth temperature. Our project begins to capture the shape of the temperature response curves, but illustrates that the relationship between growth and temperature is complex and cannot be limited to a single point in the biokinetic range.
Data from: Padfield et al. (2016) Rapid evolution of metabolic traits explains thermal adaptation in phytoplankton. Ecology letters.
<p>This repository provides the data from the TPC and logistic growth curves from the paper:</p> <p>Padfield, D., Yvon‐Durocher, G., Buckling, A., Jennings, S., & Yvon‐Durocher, G. (2016). Rapid evolution of metabolic traits explains thermal adaptation in phytoplankton. Ecology letters, 19(2), 133-142.</p> <p>metadata.pdf gives a more detailed explanation of the data.</p>
Data for: Predictable local adaptation in butterfly photoperiodism but not thermal performance along a latitudinal cline
<p>In seasonal environments, organisms must synchronize their life cycles to conditions favorable for growth and reproduction. Because season length varies geographically, local adaptation should arise in traits that regulate phenological responses. Geographic photoperiodism clines are well-known, but comparable studies on thermal performance are equivocal and often overlook non-linear responses. Therefore, we examined local adaptation in plastic responses to both photoperiod and temperature along a 752 km latitudinal cline, by comparing four Swedish populations of the butterfly <em>Pieris napi</em>. Using a common garden design, we estimated (1) photoperiod response curves for diapause induction and (2) thermal performance curves for development and growth rates. We show that differences in photoperiodism follow the expected geographical pattern, where diapause is induced at longer daylengths in northern populations (where growth seasons are short and summer days long). However, population differences in thermal performance curves were small and seemingly idiosyncratic, without clear clinal patterns. Photoperiodic responses appear to evolve more readily than thermal responses, highlighting photoperiodism as a key driver of local life cycle synchronization.</p>
Thermal adaptation in Aedes aegypti does not constrain temperature-sensitive growth of bacteria or dengue virus
<p>Data set and R script used for the following manuscript : </p> <p><strong>Thermal adaptation in <em>Aedes aegypti</em> does not constrain temperature-sensitive growth of bacteria or dengue virus</strong></p> <p><span lang="EN-US">Alida Kropf<sup>1*#</sup>, Stéphanie Dabo<sup>2</sup>, Marine Amann<sup>3</sup>, Louis Lambrechts<sup>2</sup>, Jacob C Koella<sup>1</sup></span></p> <p><span lang="EN-US">PROCEEDINGS OF THE ROYAL SOCIETY B THE ROYAL SOCIETY B BIOLOGICAL SCIENCES</span></p> <p><strong><em><span lang="IT-CH">DOI: 10.1098/rspb.2025-0832.R1 </span></em></strong></p>
Supplementary datasets, data analysis code, and R tutorials for: Phylogenetic analysis of adaptation in comparative physiology and biomechanics: overview and a case study of thermal physiology in treefrogs
<p>Comparative phylogenetic studies of adaptation are uncommon in biomechanics and physiology. Such studies require collecting data from many species, a challenge when data collection is experimentally intensive. Moreover, researchers struggle to employ the most biologically appropriate phylogenetic tools for identifying adaptive evolution. Here, we detail an established but greatly underutilized phylogenetic comparative framework—the Ornstein-Uhlenbeck process—that explicitly models long-term adaptation. We discuss challenges in implementing and interpreting the model, and we outline potential solutions. We demonstrate use of the model through studying the evolution of thermal physiology in treefrogs. Frogs of the family Hylidae have twice colonized the temperate zone from the tropics, and such colonization likely involved a fundamental change in physiology due to colder and more seasonal temperatures. However, which traits changed to allow colonization is unclear. We measured cold-temperature tolerance and characterized thermal performance curves in jumping for twelve species of treefrogs distributed from the Neotropics to temperate North America. We then conducted phylogenetic comparative analyses to examine how tolerances and performance curves evolved and to test whether that evolution was adaptive. We found that tolerance to low temperatures increased with the transition to the temperate zone. In contrast, jumping well at colder temperatures was unrelated to biogeography and thus did not adapt during dispersal. Overall, our paper shows how comparative phylogenetic methods can be leveraged in biomechanics and physiology to test the evolutionary drivers of variation among species.</p>
Genetic background and thermal regime influence adaptation to novel environment in the seed beetle, Callosobruchus maculatus
<p>Climate change is associated with the increase in both mean and variability of thermal conditions. Therefore, the use of more realistic fluctuating thermal regimes is the most appropriate laboratory method for predicting population responses to thermal heterogeneity. However, the long- and short-term implications of evolving under such conditions are not well understood. Here, we examined differences in key life history traits among populations of seed beetles (<em>Callosobruchus</em> <em>maculatus</em>) that evolved under either constant control conditions or in an environment with fluctuating daily temperatures. Specifically, individuals from two distinct genetic backgrounds were kept for 19 generations at one of two temperatures, a constant temperature (T=29°C) or a fluctuating daily cycle (T<sub>mean</sub>=33°C, T<sub>max</sub>=40°C, and T<sub>min</sub>=26°C), and were assayed either in their evolved environment or in the other environment. We found that beetles that evolved in fluctuating environments but were then switched to constant 29°C conditions had far greater lifetime reproductive success compared to beetles that were kept in their evolved environments. This increase in reproductive success suggests that beetles raised in fluctuating environments may have evolved greater thermal breadth than control condition beetles. In addition, the degree of sexual dimorphism in body size and development varied as a function of genetic background, evolved thermal environment, and current temperature conditions. These results highlight not only the value of incorporating diel fluctuations into climate research but also suggest that populations that experience variability in temperature may be better able to respond to both short- and long-term changes in environmental conditions.</p>
Thermal adaptation of pelage in desert rodents balances cooling and insulation
<p>Phenotypic convergence across distantly related taxa can be driven by similar selective pressures from the environment or intrinsic constraints. The roles of these processes on physiological strategies, such as homeothermy, are poorly understood. We studied the evolution of thermal properties of mammalian pelage in a diverse community of rodents inhabiting the Mojave Desert, U.S.A. We used a heat flux device to measure the thermal insulation of museum specimens and determined whether thermal properties were associated with habitat preferences while assessing phylogenetic dependence. Species that prefer arid habitats exhibited significantly lower conductivity and thinner pelage relative to species with other habitat preferences. Despite having thinner pelage, the low conductivity imparted comparable insulation to species with other habitat preferences. Thus, arid species retain insulative pelage while simultaneously benefitting from thin pelage that promotes heat loss via convective cooling. We found no evidence of intrinsic constraints or phylogenetic dependence. Heat flux models designed to simulate body temperature regulation demonstrated that arid specialists saved 14.5% of their annual energy required for homeothermy by evolving lower conductivity, providing support for adaptive evolution of pelage. Our study indicates that selection for lower energetic requirements of homeothermy has shaped evolution of pelage thermal properties.</p>
Environment and phenology shape local adaptation in thermal performance
Populations within species often exhibit variation in traits that reflect local adaptation and further shape existing adaptive potential for species to respond to climate change. However, our mechanistic understanding of how the environment shapes trait variation remains poor. Here, we used common garden experiments to quantify thermal performance in eight populations of the marine snail <i>Urosalpinx cinerea </i>across thermal gradients on the Atlantic and the Pacific coasts of North America. We then evaluated the relationship between thermal performance and environmental metrics derived from time-series data. Our results reveal a novel pattern of "mixed" trait performance adaptation, where thermal optima was positively correlated with spawning temperature (cogradient variation), while maximum trait performance was negatively correlated with season length (countergradient variation). This counterintuitive pattern likely arises because of phenological shifts in the spawning season, whereby "cold" populations delay spawning until later in the year when temperatures are warmer compared to "warm" populations that spawn earlier in the year when temperatures are cooler. Our results show that variation in thermal performance can be shaped by multiple facets of the environment and are linked to organismal phenology and natural history. Understanding the impacts of climate change on organisms therefore requires the knowledge of how climate change will alter different aspects of the thermal environment.
Upper thermal tolerance of grassland vipers (Vipera spp.): environmental drivers and local adaptation
<p>The thermal tolerance of ectotherms is a critical factor that influences their distribution, physiology, behaviour, and ultimately survival. Understanding the factors that shape thermal tolerance in these organisms is therefore of great importance for predicting their responses to forecasted climate warming. Here, we investigated the voluntary thermal maximum (VTmax) of nine grassland viper taxa and explored the factors that influence this trait. The small size of these vipers and the open landscape they inhabit renders them particularly vulnerable to overheating and dehydration. We found that the VTmax of grassland vipers is influenced by environmental temperature, precipitation, shortwave flux, and individual body size, rather than by phylogenetic relatedness. Vipers living in colder environments exhibited a higher upper thermal tolerance, contradicting the hypothesis that environmental temperature is positively related to VTmax. Our findings emphasise the importance of considering local to regional adaptation and environmental conditions when studying thermal physiology and the evolution of thermal tolerance in ectotherms.</p>
Thermal adaptation of pelage in desert rodents balances cooling and insulation
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Environment and phenology shape local adaptation in thermal performance
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Data from: First evidence of a genetic basis for thermal adaptation in a schistosome host snail
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Genetic background and thermal regime influence adaptation to novel environment in the seed beetle, Callosobruchus maculatus
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Data from: Genetic variation for thermal adaptation in a cosmopolitan stored product pest
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Supplementary datasets, data analysis code, and R tutorials for: Phylogenetic analysis of adaptation in comparative physiology and biomechanics: overview and a case study of thermal physiology in treefrogs
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Data for: Predictable local adaptation in butterfly photoperiodism but not thermal performance along a latitudinal cline
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Data from: Does local adaptation along a latitudinal cline shape plastic responses to combined thermal and nutritional stress?
<p>Thermal and nutritional stress are commonly experienced by animals. This will become increasingly so with climate change. Whether populations can plastically respond to such changes will determine their survival. Plasticity can vary among populations depending on the extent of environmental heterogeneity. However, theory conflicts as to whether environmental heterogeneity should increase or decrease plasticity. Using three locally-adapted populations of Drosophila melanogaster sampled from a latitudinal gradient, we investigated whether plastic responses to combinations of nutrition and temperature increase or decrease with latitude for four traits: egg-adult viability, egg-adult development time, and two body size traits. Employing nutritional geometry, we reared larvae on 25 diets varying in protein and carbohydrate content at two temperatures: 18ºC and 25ºC. Plasticity varied among traits and across the three populations. Viability was highly canalized in all three populations. The tropical population showed the least plasticity for development time, the sub-tropical showed the highest plasticity for wing area, and the temperate population showed the highest plasticity for femur length. We found no evidence of latitudinal plasticity gradients in either direction. Our data highlight that differences in thermal variation and resource predictability experienced by populations along a latitudinal cline are not sufficient to predict their plasticity. </p>
Data from: Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation
Climate warming may stimulate microbial metabolism of soil carbon, causing a carbon cycle-climate feedback whereby carbon is redistributed from soil to atmospheric CO2. The magnitude of this feedback is uncertain, in part because warming-induced shifts in microbial physiology and/or community composition could retard or accelerate soil carbon losses. Here, we measure microbial respiration rates for soils collected from 22 sites in each of three years, at locations spanning boreal to tropical climates. Respiration was measured in the laboratory with standard temperatures, moisture and excess carbon substrate, to allow physiological and community effects to be detected independent from the influence of these abiotic controls. Patterns in respiration for soils collected across the climate gradient are consistent with evolutionary theory on physiological responses that compensate for positive effects of temperature on metabolism. Respiration rates per unit microbial biomass were as much as 2.6-times higher for soils sampled from sites with a mean annual temperature (MAT) of -2.0 versus 21.7ºC. Subsequent 100-day incubations suggested differences in the plasticity of the thermal response among microbial communities, with communities sampled from sites with higher MAT having a more plastic response. Our findings are consistent with adaptive metabolic responses to contrasting thermal regimes that are also observed in plants and animals. These results may help build confidence in soil carbon-climate feedback projections by improving understanding of microbial processes represented in biogeochemical models.
Data for: Variability in thermal and phototactic preferences in Drosophila may reflect an adaptive bet-hedging strategy
<p>Data and code for "Variability in thermal and phototactic preferences in <em>Drosophila</em> may reflect an adaptive bet-hedging strategy." </p> <p>.zip file contains .mats with data, a LabView .vi for the acquisition instrument, and Matlab .m analysis and visualization scripts. </p> <p>The included index.html file acts as a readme and contains descriptions of all other files and links.</p>
Data from: Fitness surfaces and local thermal adaptation in Drosophila along a latitudinal gradient
<p><span>Local adaptation is commonly cited to explain species distribution, but how fitness varies along continuous geographical gradients is not well understood. Here we combine thermal biology and life-history theory to demonstrate that <em>Drosophila </em>populations along a 2,500 km latitudinal cline are adapted to local conditions. We measured how heat tolerance and viability rate across 8 populations vary with temperature in the laboratory, and then simulated their expected cumulative Darwinian fitness employing high-resolution temperature data from their 8 collection sites. Simulations indicate a trade-off between annual survival and cumulative viability, as both mortality and the recruitment of new flies are predicted to increase in warmer regions. Importantly, populations are locally adapted and exhibit the optimal combination of both traits to maximize fitness where they live. In conclusion, our method is able to reconstruct fitness surfaces employing empirical life-history estimates and reconstructs peaks representing locally adapted populations, allowing to study geographic adaptation <em>in silico</em>.</span></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.