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62 results for “thermophile”
Projected climate and canopy change lead to thermophilization and homogenization of forest floor vegetation in a hotspot of plant species richness, Berchtesgaden National Park, Bavaria, Germany
Mountain forests are plant diversity hotspots, but changing climate and increasing forest disturbances will likely lead to far-reaching plant community change. Projecting future change, however, is challenging for forest understory plants, which respond to forest structure and composition as well as climate. Here, we jointly assessed effects of both climate and forest change, including wind and bark beetle disturbances, using the process-based simulation model iLand in a protected landscape in the northern Alps (Berchtesgaden National Park, Germany), asking: (1) How do understory plant communities respond to 21st-century change in a topographically complex mountain landscape, representing a hotspot of plant species richness? (2) How important are climatic changes (i.e., direct climate effects) versus forest structure and composition changes (i.e., indirect climate effects and recovery from past land use) in driving understory responses at landscape scales? Stacked individual species distribution models fit with climate, forest, and soil predictors (248 species currently present in the landscape, derived from 150 field plots stratified by elevation and forest development, overall AUC = 0.86) were driven with projected climate (RCP4.5 and RCP8.5) and modeled forest variables to predict plant community change. Nearly all species persisted in the landscape in 2050, but on average 8% of the species pool was lost by the end of the century. By 2100, landscape mean species richness and understory cover declined (-13% and -8%, respectively), warm-adapted species increasingly dominated plant communities (i.e., thermophilization, +12%), and plot-level turnover was high (62%). Subalpine forests experienced the greatest richness declines (-16%), most thermophilization (+17%), and highest turnover (67%), resulting in plant community homogenization across elevation zones. Climate rather than forest change was the dominant driver of understory responses. The magnitude of unabated 2
Code for generating figures and analyzing amplicon sequencing of human mRNA and reporter mRNA targeted with type III-A CRISPR complex from Streptococcus thermophiles
<p>This dataset contains code for analyzing amplicon sequencing data and generating figures in the manuscript by Anna Nemudraia, Artem Nemudryi, and Blake Wiedenheft (2024), "Repair of CRISPR-guided RNA breaks enables site-specific RNA excision in human cells." </p> <p>Amplicon sequencing data has been deposited to NCBI Sequence Read Archive (SRA) under BioProject PRJNA1099688. The description of read files deposited to SRA can be found in the spreadsheet ./code_for_sequencing_data_analysis/SRA_read_files_description.xlsx</p> <p>The code for analyzing amplicon sequencing data can be found in the archive "code_for_sequencing_data_analysis.tar.gz." Output files from this analysis were used to generate figures. Figures were generated using the ggplot2 package in R and finalized in CorelDRAW.</p> <p>Code for generating figures can be found in the archive "code_for_generating_figures.tar.gz". </p> <p>Any questions or requests regarding the data or the code should be addressed to Dr. Artem Nemudryi at artem.nemudryi@gmail.com.</p>
Text-fig. 1. Modern vegetation proxies as delivered by the Drudge 1 and 2 tools for Parschlug. Left column results from KovarEder et al. (2021) based on the floristic spectrum published by Kovar-Eder et al. (2004). The other three columns result from three variants using the enlarged floristic spectrum herein. Differences between variants 1–3 from this study are caused by differences in assignment of some taxa and morphotypes (see Appendix 1). European vegetation formations: Formation C – Subarctic, boreal and nemoral-montane open woodlands as well as subalpine and oro-Mediterranean vegetation; Formation D – Mesophytic and hygromesophytic coniferous and mixed broad-leaved-coniferous forests; Formation F – Mesophytic broadleaved deciduous and mixed broadleaved/conifer forests; Formation G – Thermophilous mixed deciduous broadleaved forests; Formation J – Mediterranean sclerophyllous forests and scrub; Formation K – Xerophytic coniferous forests, coniferous woodland and scrub. East Asian vegetation types: MCF China, Japan – Montane Coniferous Forests China, Honshu, Yakushima; BLDF N and NE Provinces, China – Broad-leaved Deciduous Forests of the Northern and Northeastern Provinces (China); BLDF Upper Yangtze, Honshu – Broad-leaved Deciduous Forest, Upper Yangtze Provinces, Mt. Emei, and Honshu; MMF China – Mixed Mesophytic Forest, Lower Yangtze Provinces; BLEF China, Japan – Broad-leaved Evergreen Forests, China, Japan; Meili Snow Mt. high altitude SCL and BLF, China – Meili Snow Mt., Sclerophyllous and broad-leaved forest zone (2,580-3,650 m alt.). (Designations of European vegetation formations follow Bohn et al. (2004) and Asian ones follow Kovar-Eder et al. (2021). in Floristic, Vegetation And Climate Assessment Of The Early/Middle Miocene Parschlug Flora Indicates A Distinctly Seasonal Climate
Text-fig. 1. Modern vegetation proxies as delivered by the Drudge 1 and 2 tools for Parschlug. Left column results from KovarEder et al. (2021) based on the floristic spectrum published by Kovar-Eder et al. (2004). The other three columns result from three variants using the enlarged floristic spectrum herein. Differences between variants 1–3 from this study are caused by differences in assignment of some taxa and morphotypes (see Appendix 1). European vegetation formations: Formation C – Subarctic, boreal and nemoral-montane open woodlands as well as subalpine and oro-Mediterranean vegetation; Formation D – Mesophytic and hygromesophytic coniferous and mixed broad-leaved-coniferous forests; Formation F – Mesophytic broadleaved deciduous and mixed broadleaved/conifer forests; Formation G – Thermophilous mixed deciduous broadleaved forests; Formation J – Mediterranean sclerophyllous forests and scrub; Formation K – Xerophytic coniferous forests, coniferous woodland and scrub. East Asian vegetation types: MCF China, Japan – Montane Coniferous Forests China, Honshu, Yakushima; BLDF N and NE Provinces, China – Broad-leaved Deciduous Forests of the Northern and Northeastern Provinces (China); BLDF Upper Yangtze, Honshu – Broad-leaved Deciduous Forest, Upper Yangtze Provinces, Mt. Emei, and Honshu; MMF China – Mixed Mesophytic Forest, Lower Yangtze Provinces; BLEF China, Japan – Broad-leaved Evergreen Forests, China, Japan; Meili Snow Mt. high altitude SCL and BLF, China – Meili Snow Mt., Sclerophyllous and broad-leaved forest zone (2,580-3,650 m alt.). (Designations of European vegetation formations follow Bohn et al. (2004) and Asian ones follow Kovar-Eder et al. (2021).
Fig. 1 in Association of Ovalisia rutilans (Fabricius, 1777) (Coleoptera: Buprestidae) with thermophilous habitats toward its range edge in northern Poland
Fig. 1. Occurrence of Ovalisia rutilans in Poland (according to Burakowski et al. 1985, Gutowski & Ůugowoj 2000, Z. Chrul, J. Kurzawa, K.Maciejewski, pers.com. – see Appendix). The square indicates the study area.
Thermophilic methane oxidation is widespread in New Zealand geothermal fields
<p>This is processed data used for analysis in a manuscipt currently being prepared for publication.<br> Samples of soil or sediment were taken from geothermal fields in the Taupo Volcanic Zone, New Zealand;<br> methane oxidation was quantified; DNA was extracted from each sample for 16S rRNA gene sequencing.</p> <p> </p>
FIG. 2 in Hygrophorus roseodiscoideus Bon & Chevassut: epitypification and updated biogeography of a poorly known but widespread thermophilous species
FIG. 2. — Macro- and microcharacters of the epitype of Hygrophorus roseodiscoideus Bon & Chevassut. In situ photograph, violet hues are exaggerated as the photo has been taken with a flash. A, photo by P.-A. Moreau; B, pileipellis structure; C, lamellar trama structure; D, spore drawing; E, basidia drawing of PAM00103101 (LIP[LIP 0402283]). Scale bars: A, 1 cm; B, C, 100 µm; D, E, 10 µm.
FIG. 1 in Hygrophorus roseodiscoideus Bon & Chevassut: epitypification and updated biogeography of a poorly known but widespread thermophilous species
FIG. 1. — Original material of Hygrophorus roseodiscoideus Bon & Chevassut: A, hand-written description sheet and color drawing of specimens of the holotype of H. roseodiscoideus by M. Bon; B, photograph of the dried basidiomata (holo-, Bon 84391 kept in LIP).
FIG. 4 in Hygrophorus roseodiscoideus Bon & Chevassut: epitypification and updated biogeography of a poorly known but widespread thermophilous species
FIG. 4. — Basidiomata of Hygrophorus roseodiscoideus Bon & Chevassut: A, Czech Republic, Čtvrtě, photo by J. Holec (PRM[PRM 955166]); B, Czech Republic, Sivický les, photo by D. Dvořák (BRNU[BRNU 677820]); C, France, Cucuron, photo by D. Borgarino (DiBo041202); D, Hungary, Mt. Széchenyi-hegy, photo by B. Dima (DB 2020-11-12-2); E, Italy, Cipresseta S. Agnese, photo by E. Campo (EC16102825); F, Italy, Passo Cantoniera, photo by A. Hausknecht (WU[WU-Myc 25200]). All collections were sequenced. For full collection data, see section Additionnal material examined.
Un mâle (Fig. 1a) et une femelle ont ainsi été capturés au moyen de deux pièges d'interception (selon le modèle de Brustel 2012). Le premier piège était suspendu sur un chêne mort sur pied dans une chênaie thermophile de plaine, à une altitude de 499 m (Fig. 1b). Outre cette découverte, ce piège a permis de mettre en évidence d'autres espèces rares telles Clytus tropicus (Panzer, 1795) (Cerambycidae) et Camptorhinus simplex Seidlitz, 1867 (Curculionidae). Le second piège, situé à près de 5 km du premier, était placé sur un hêtre mort sur pied à 869 m d'altitude. Cet arbre était notamment colonisé par Rosalia alpina (Linnaeus, 1758) (Cerambycidae). Ce second piège a permis de capturer en outre plusieurs spécimens de Stictoleptura scutellata (Fabricius, 1781) (Cerambycidae) et un de Mesosa curculionoides (Linnaeus, 1760) (Cerambycidae), deux espèces rares. À noter toutefois que de nombreux chênes étaient présents à proximité de ce hêtre. Malgré le long intervalle entre les deux relevés, l'excellent état de conservation des deux spécimens capturés laisse supposer une date tardive de capture (plutôt en novembre qu'en septembre ou octobre). in Tetratoma desmarestii Latreille, 1807, un Tetratomidae nouveau pour la faune de Suisse (Coleoptera)
Un mâle (Fig. 1a) et une femelle ont ainsi été capturés au moyen de deux pièges d'interception (selon le modèle de Brustel 2012). Le premier piège était suspendu sur un chêne mort sur pied dans une chênaie thermophile de plaine, à une altitude de 499 m (Fig. 1b). Outre cette découverte, ce piège a permis de mettre en évidence d'autres espèces rares telles Clytus tropicus (Panzer, 1795) (Cerambycidae) et Camptorhinus simplex Seidlitz, 1867 (Curculionidae). Le second piège, situé à près de 5 km du premier, était placé sur un hêtre mort sur pied à 869 m d'altitude. Cet arbre était notamment colonisé par Rosalia alpina (Linnaeus, 1758) (Cerambycidae). Ce second piège a permis de capturer en outre plusieurs spécimens de Stictoleptura scutellata (Fabricius, 1781) (Cerambycidae) et un de Mesosa curculionoides (Linnaeus, 1760) (Cerambycidae), deux espèces rares. À noter toutefois que de nombreux chênes étaient présents à proximité de ce hêtre. Malgré le long intervalle entre les deux relevés, l'excellent état de conservation des deux spécimens capturés laisse supposer une date tardive de capture (plutôt en novembre qu'en septembre ou octobre).
FIG. 6 in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 6. Large sphere of the kindfrequently seen in T. aquaticus cultures. Bar represents JO,m.
TODO FIG.1. Growth rateofT. aquaticusYT-1 in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
TODO FIG.1. Growth rateofT. aquaticusYT-1atdifferent
FIG. 7. T in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 7. T. aquaticus filament with swollen end. Bar represenzts JO,um.
FIG. 4. T in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 4. T. aquaticus rods aggregating in a rosette. Bar represents 10 /,m.
FIG. 2 in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 2. Rod and filamentous forms of T. aquaticus. Bar represents 10,um.
FIG. 5. Electron micrograph ofa T. aquaticus rod, showing presence ofslime. Bar represents I J in Thermus aquaticus gen. n. and sp. n., a Nonsporulating Extreme Thermophile
FIG. 5. Electron micrograph ofa T. aquaticus rod, showing presence ofslime. Bar represents I J,um.
Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems - Supplementary Datasets
<p>These datasets comprise the supplementary datasets found in Sims et al. A Tale of Two Pools: The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Hydrothermal Systems, <strong><em>Geochimica et Cosmiochimica Act </em></strong></p>
Need for speed? It is not necessary to be always the fastest–a case study of two thermophilous ant species
Open the record for dataset details and reuse information.
Data and code from: Climate change, tree demography, and thermophilization in western US forests
Open the record for dataset details and reuse information.
Fig. 3 in Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia
Fig. 3. Dendrogram showing the phylogenetic position of strain RC3T with members of the genus Caloramator. Clostridium butyricum ATCC 19398T was used as an outgroup. GenBank accession numbers are given in parentheses. Bootstrap values.98 % are shown. Bar, 2 changes per 100 nucleotide positions.
Fig. 2 in Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia
Fig. 2. Growth and Fe(II) production by strain RC3T with glycerol (0.2 %) as an electron donor and ammonium ferric citrate as an electron acceptor. ·, Fe(II) concentration in strain RC3T culture; ©, Fe(II) concentration in control; -, cell density in strain RC3 T culture.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.