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5 results for “transcriptome-wide association study”
Liver and Blood Expression Prediction Generated for Opportunities and challenges for transcriptome-wide association studies
<p>db files are in sqlite format and contain weights to calculate genetic predictors of gene expression</p> <p>Blood, Liver indicate the tissue where the RNA was extracted from</p> <p>Crohns and LDL indicate that prediction models were generated using SNPs available in the GWAS summary results used in the paper (Wainberg et al <a href="https://doi.org/10.1038/s41588-019-0385-z">https://doi.org/10.1038/s41588-019-0385-z</a>)</p> <p>*txt.gz filex contain covariances between SNPs needed to run the summary version of PrediXcan or other TWAS methods</p> <p>Information about the RNAseq data can be found here https://pubmed.ncbi.nlm.nih.gov/27540175/</p> <p>Sample size n=522</p>
Expression profiling by high throughput sequencing and transcriptome-wide association study study the metabolic mechanism of the formation of atorvastatin lactone and the risk to statin-induced myotox
GEO Series GSE87592. Homo sapiens. 53 samples. Type: Expression profiling by high throughput sequencing.
A combined epigenome- and transcriptome-wide association study of the oral masticatory mucosa assigns CYP1B1 a central role for epithelial health in smokers
GEO Series GSE136262. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
Dissecting the molecular basis of flowering time in Camelina sativa through integration of WGCNA, eQTL analysis and transcriptome-wide association study
GEO Series GSE253393. Camelina sativa. 159 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome-wide Association study identifies putative Elicitors/Suppressor of Puccinia graminis f. sp. tritici that Modulate Barley rpg4-mediated Stem Rust Resistance
GEO Series GSE130423. Puccinia graminis f. sp. tritici; Hordeum vulgare. 27 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.