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Dataset results
38 results for “transformation pathway”
Pathformer: a biological pathway informed Transformer for disease diagnosis and prognosis using multi-omics data
<p>Integrating multi-omics data offers a more comprehensive view of gene regulation, which would be helpful in achieving accurate diagnosis of diseases like cancer. To improve the accuracy of disease diagnosis and prognosis, we developed Pathformer, a multi-omics integration method for both tissue and liquid biopsy data. We implemented Pathformer's network architecture using the “PyTorch” package in Python v3.6.9, and our codes can be found in the GitHub repository (https://github.com/lulab/Pathformer). This repository contains preprocessed TCGA dataset data, preprocessedliquid biopsy dataset data, result of Pathformer and comparison_methods, mentioned in GitHub project and article.</p>
Case study input data set for article "Stochastic planning of energy system transformation pathways under uncertain industry demands"
<p>The data set contains input data for the model EMPRISE of Fraunhofer Institute for Energy Economics and Energy System Technology IEE. </p>
An assessment of energy system transformation pathways to achieve net-zero carbon dioxide emissions in Switzerland. Supplementary Information Assumptions and Results
<p>This dataset accompanies the corresponding article in Communications Earth and Environment. It contains the key assumptions used in the energy system modelling with the Swiss TIMES energy systems model (STEM) for assessing net-zero carbon dioxide emissions scenarios for Switzerland. In addition, contains extensive results from STEM for each one of the core scenarios and variants assessed in the study.</p> <p>The following files are contained in this repository:</p> <ul> <li><strong>Supplementary Data 1</strong>: This is the EXCEL file "Supplementary_Information_Assumptions.xslx" which contains key assumptions of the long-term scenarios assessed with STEM. These include among others: the major energy and climate policies in each scenario, the economic and demographic assumptions, key drivers for the residential energy demand (e.g., floor reference area or appliances), key drivers for the energy demand in the services sectors (e.g., Gross Value Added or floor area), key drivers for the energy demand in industry (e.g., production index or Gross Value Added), mobility demands, energy import prices, hourly electricity import prices, net transfer capacities, domestic sustainable renewable resource potentials, energy supply and demand technologies costs and efficiencies</li> <li><strong>Supplementary Data 2</strong>: This is the EXCEL file "Supplementary_Information_Results.xlsx" which contains energy balances from the baseline and the net-zero CO<sub>2</sub> emissions scenarios. The results for each scenario are: domestic production by fuel, net imports by fuel, primary energy consumption by fuel, input to conversion sectors by fuel, electricity supply and capacities by fuel, district heating supply by fuel, final energy consumption by fuel and sector, CO2 emissions by source, energy system costs, and indicators such as energy consumption per capita, energy intensity of GDP, CO2 emissions per capita and CO2 intensity of GDP. </li> <li><strong>Supplementary Data 3</strong>: The ZIP file "Source_code_and_data_for_charts.zip" contains source codes and data for reproducing the figures in the manuscript. </li> </ul>
Pathways to Equitable Access to Kidney Transplantation in Spain: A Transformative Mixed-methods Study Protocol
ClinicalTrials.gov study NCT07208994. IPD Sharing: YES. Countries: 1. Publications: 0.
Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia
GEO Series GSE109367. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
fiber transformation without CaMK pathway in electric-stimulation
GEO Series GSE6660. Mus musculus. 18 samples. Type: Expression profiling by array.
Identification of transformation-related pathways in a breast epithelial cell model using a ribonomics approach.
GEO Series GSE12215. Homo sapiens. 12 samples. Type: Expression profiling by array.
Diethyl maleate inhibits MCA+TPA transformed cell growth via modulation of GSH, MAPK, and cancer pathways
GEO Series GSE44650. Mus musculus. 4 samples. Type: Expression profiling by array.
Dysregulation of pathways involved in the processing of cancer and microenvironment information in MCA+TPA transformed C3H/10T1/2 cells
GEO Series GSE41142. Mus musculus. 4 samples. Type: Expression profiling by array.
RNA-Seq analysis of genes and pathways involved in the TGF-β-driven transformation of fibroblasts to myofibroblasts
GEO Series GSE110021. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic alterations including p53 pathway dysregulation prime DNMT3A mutant cells for transformation
GEO Series GSE275532. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing.
Lurbinectedin is an effective therapeutic target for de novo and transformed small cell lung cancer and modulates EMT and NOTCH signaling pathways.
GEO Series GSE223372. Homo sapiens. 61 samples. Type: Expression profiling by high throughput sequencing.
KLK1 prevents colorectal inflammation-cancer transformation via B1R-mediated ECM pathway
GEO Series GSE282383. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Identification of deregulated pathways, key regulators, and novel miRNA-mRNA interactions in HPV-mediated transformation. [CGH cell lines-Agilent]
GEO Series GSE138724. Homo sapiens. 32 samples. Type: Genome variation profiling by genome tiling array.
Distinct GAB2 signaling pathways are essential for myeloid and lymphoid transformation and leukemogenesis by BCR-ABL1
GEO Series GSE75615. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
MircroRNA-92b, a Novel Negative Regulator of the Transforming Growth Factor-β Signaling Pathway Targeting the Type I Receptor
GEO Series GSE242295. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Systems-level analyses reveal a convergent pathway for progression of diffuse astrocytoma and potential role for resveratrol in delaying high-grade transformation
GEO Series GSE117620. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
fiber transformation with activation of CaN pathway
GEO Series GSE6658. Mus musculus. 6 samples. Type: Expression profiling by array.
Transforming Ovarian Cancer Diagnostic Pathways
ClinicalTrials.gov study NCT06129968. IPD Sharing: NO. Countries: 1. Publications: 0.
Differential Network Analysis Reveals the Key Role of the ECM-receptor Pathway in α-Particle-induced Malignant Transformation
GEO Series GSE235882. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.