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78 results for “transpositions”
Transposition confusability during visual word recognition
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Genomic DNA transposition induced by human PGBD5 (Accompanying Scripts for Computational Analyses)
<p>We include the bash scripts, python code and command-line parameters used to prepare, map, and analyze NGS sequencing data generated from a modified version of flanking sequence exponential anchored (FLEA) PCR to identify genomic insertion locations of a transposable element reporter construct. In summary, we map these reads to a hybrid genome consisting in the human reference hg19 and the reporter plasmid, identify reads that span the insertion breakpoint and thus recover the genomic insertion loci. </p> <p>Please find more details in the supplied README. </p> <p> </p> <p>This collection of scripts corresponds to the data analysis in the following publication:</p> <p>Genomic DNA transposition induced by human PGBD5</p> <p>Anton Henssen, Elizabeth Henaff, Eileen Jiang, Amy Eisenberg, Julianne R. Carson, Camila Villasante, Mondira Ray, Eric Still, Melissa Burns, Jorge Gandara, Cedric Feschotte, Christopher E. Mason, Alex Kentsis</p> <p> </p> <p> </p>
APPENDIX A - SEARCH PROTOCOLE AND PAPERS LIST - Cognitive Neuroscience's Transposition in STEAM Classroom: A Systematic Literature Review
<p>An integrative literature review was performed corresponding to PRISMA’ protocol in order to integrate issues over an innovative curriculum through cognitive sciences didactic transposition in STEAM classrooms. The search action was handled using various international databases. Each paper was selected alongside the PICO strategy and a defined selection criterion. Analysis of the literature between 2000 and 2021 is presented.</p>
Atmosphéries and the poetics of the in situ: the role and impact of sensors in data-to-sound transposition installations - Supplementary audio material
<p>This audio file wishes to give an insight into NXI Gestatio Design Lab's <em>Atmosphéries</em> research program, and to accompany the publication "Atmosphéries and the poetics of the in situ: the role and impact of sensors in data-to-sound transposition installations". The file consists in a 7-minutes recording of the <em>Meridian Probe</em>, the last instrument designed within the <em>Atmosphéries</em> program, which allows to generate sound from on-site atmospheric data. The recorded extract then acts as a sonic representation of the atmospheric conditions found at the place of exhibition, at the time of recording - in this case, gardens of the Bussy-Rabutin's Castle (France), respectively July 31st, 2021, 17h17. For further information about the <em>Meridian Probe</em>'s design and functioning, we invite you to read the aforementioned publication.</p>
China's new type rural social insurance pension (NRSIP): transposition central government pilot guidelines into local documents
<p>The list provides an overview of how the pilot guidelines issued by the central government have been transposed into local documents (provincial level).</p> <p>Matthias Stepan has compiled the data and information in the period 2009-2013. It has been part of his dissertation project at VU University Amsterdam.</p>
Results of the paper "Composition Identification in Ottoman-Turkish Makam Music Using Transposition-Invariant Partial Audio-Score Alignment"
<p>This repository contains the composition identification and tonic identification results along with the statistical significance values presented in the paper:</p> <p>Şentürk, S., & Serra X. (2016). <strong>Composition Identification in Ottoman-Turkish Makam Music Using Transposition-Invariant Partial Audio-Score Alignment.</strong> In Proceedings of 13th Sound and Music Computing Conference (SMC 2016), (pp. XX–XX)., Hamburg, Germany.</p> <p>Please cite the publication above in any work using this dataset.</p> <p>For the details of the results, please refer to the paper. For any further information please contact the authors.</p> <p>This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.</p>
Data and Analysis Script for Cluster2022 Submission pap254: "Painless Transposition of Reproducible Distributed Environments with NixOS Compose"
<p>Data and Analysis Script for Cluster2022 Submission pap254: "Painless Transposition of Reproducible Distributed Environments with NixOS Compose"</p> <p>The experiments repository is available at: <a href="https://gitlab.inria.fr/nixos-compose/articles/cluster2022">https://gitlab.inria.fr/nixos-compose/articles/cluster2022</a></p>
Novel molecular requirements for CRISPR RNA-guided transposition
<p>CRISPR-associated transposons (CASTs) direct DNA integration downstream of target sites using the RNA-guided DNA binding activity of nuclease-deficient CRISPR-Cas systems. Transposition relies on several key protein-protein and protein-DNA interactions, but little is known about the explicit sequence requirements governing efficient transposon DNA integration activity. Here, we exploit pooled library screening and high-throughput sequencing to reveal novel sequence determinants during transposition by the Type I-F <em>Vibrio cholerae </em>CAST system. On the donor DNA, large mutagenic libraries revealed binding site nucleotide preferences for the TnsB transposase, as well as an additional conserved region that encoded a consensus binding site for integration host factor (IHF). Remarkably, we found that VchCAST requires IHF for efficient transposition, thus revealing a novel cellular factor involved in CRISPR-associated transpososome assembly. On the target DNA, we uncovered preferred sequence motifs at the integration site that explained previously observed heterogeneity with single-base pair resolution. Finally, we exploited our library data to design modified transposon variants that enable in-frame protein tagging. Collectively, our results provide new clues about the assembly and architecture of the paired-end complex formed between TnsB and the transposon DNA, and inform the design of custom payload sequences for genome engineering applications with CAST systems.</p>
Late Function After Surgery for Transposition of the Great Arteries
ClinicalTrials.gov study NCT03078413. IPD Sharing: NO. Countries: 1. Publications: 5.
Physical Training in Transposition of the Great Arteries
ClinicalTrials.gov study NCT00837603. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Levosimendan Administration in Neonates With Transposition of the Great Arteries
ClinicalTrials.gov study NCT01120106. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Influence of Timing of Switch Operation in Transposition of Great Arteries
ClinicalTrials.gov study NCT05160116. IPD Sharing: NO. Countries: 1. Publications: 6.
Efficacy of the Adipose Graft Transposition Procedure (AGTP) in Patients With a Myocardial Scar: The AGTP II Trial
ClinicalTrials.gov study NCT02798276. IPD Sharing: Not stated. Countries: 1. Publications: 6.
Characterization of the Cardiac Reinnervation of Patients With Transposition of the Great Arteries Long After Repair With the Arterial Switch Operation. Correlation With Electrocardiographic and Exerc
ClinicalTrials.gov study NCT03469843. IPD Sharing: NO. Countries: 1. Publications: 4.
Pericardic Adipose Pedicle Transposition Over the Myocardial Infarct (adiFLAP Trial)
ClinicalTrials.gov study NCT01473433. IPD Sharing: Not stated. Countries: 1. Publications: 3.
10-year Follow-up After Tibial Tubercle Transposition
ClinicalTrials.gov study NCT05629754. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
A Retrospective Comparison of the Efficacy and Safety of Celsior® in Pediatric Cardiac Surgery for Transposition of the Great Vessels
ClinicalTrials.gov study NCT04616222. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Trial Comparing One-stage With Two-stage Basilic Vein Transposition
ClinicalTrials.gov study NCT01274117. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Crystallized Phenol Versus Transposition Flaps for Treatment of Pilonidal Disease: A Prospective Study
ClinicalTrials.gov study NCT01792557. IPD Sharing: Not stated. Countries: 1. Publications: 4.
Acute Maternal Hyperoxygenation for Fetal Transposition of the Great Arteries (TGA)
ClinicalTrials.gov study NCT03771534. IPD Sharing: NO. Countries: 1. Publications: 7.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.