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opencc-zeroDec 2016View details →

FIGURE 13 in Description of a new species of Lethe (Lepidoptera, Nymphalidae, Satyrinae) from western Yunnan, China

FIGURE 13. Map of S China with distribution records of Lethe camilla, L. privigna and L. tengchongensis sp. nov.

Figure 6 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 6. Comparison of the two equally parsimonious trees (TL = 123 steps; CI = 0.85; RI = 0.87) derived from analysis of data presented in Appendices 1 and 2.

Figure 5 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 5. Philydrosaurus proseilus gen. et sp. nov., pelvic girdle, hind limbs and anterior caudal vertebrae of the holotype (PKUP V2001). Double arrows pointing to the ischium spike.

Figure 4 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 4. Philydrosaurus proseilus gen. et sp. nov., pectoral girdle and fore limb of the holotype (PKUP V2001). Note arrows pointing to ect- and entepicondylar foramina.

Figure 3 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 3. Philydrosaurus proseilus gen. et sp. nov., photograph and line drawing of the holotype skull and mandibles (PKUP V2001).

Figure 1 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 1. Map showing geographical location of monjurosuchid fossil sites in China: Shangheshou near Chaoyang, Jingangshan (Zaocishan) near Yixian, Doutai near Yixian, and Niuyingzi and Dawangzhangzi near Lingyuan.

Figure 2 in A new choristodere (Reptilia: Diapsida) from the Lower Cretaceous of western Liaoning Province, China, and phylogenetic relationships of Monjurosuchidae

Figure 2. Philydrosaurus proseilus gen. et sp. nov., holotype (PKUP V2001) from Shangheshou near Chaoyang, western Liaoning Province; Early Cretaceous Chiufotang Formation.

Figure 6 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 6. Variation of the live adult male paratype GZNU20220705001 of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. A. Dorsolateral view; B. Dorsal view; C. Ventral view.

Figure 1 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 1. Sampling localities of Rana zhijinensis Luo, Xiao & Zhou, sp. nov., R. culaiensis, R. hanluica, and R. omeimontis in Guizhou Province, China. A. Guiguo Town, Zhijin County; B. Supu Town, Qianxi County; C. Zhujianshan Nature Reserve, Huangping County; D. Leigongshan National Nature Reserve, Leishan County.

Figure 2 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 2. Phylogenetic tree based on three mitochondrial genes and six nuclear genes. A. Maternal tree; B. Nuclear gene tree. In both phylogenetic tree, ultrafast bootstrap support (UFB) values from ML analyses/Bayesian posterior probabilities (BPP) from BI analyses are given beside nodes. Scale bars denote nucleotide substitutions per sites for mitochondrial and nuclear genes.

Figure 5 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 5. Morphological features of the live adult male holotype GZNU2018081606 of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. A. Dorsolateral view; B. Dorsal view; C. Ventral view; D. Egg cluster; E. Ventral view of hand and dark gray-blackish nuptial pad; F. Ventral view of foot.

Figure 4 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 4. Haplotype networks of Rana zhijinensis Luo, Xiao & Zhou, sp. nov. and its related species constructed based on the nuclear gene sequences. Different species of the R. japonica group are shown as different colors.

Figure 3 in Description of a new species of the genus Rana (Anura: Ranidae) from western Guizhou, China, integrating morphological and molecular genetic data

Figure 3. Phylogenetic tree based on four mitochondrial genes and six nuclear genes. In this phylogenetic tree, UFB from ML analyses/ BPP from BI analyses are given beside nodes. The scale bar represents 0.03 nucleotide substitutions per site. Red lines represent species delimitation results of bPTP and BPP.

opencc-zeroFeb 2023View details →

MicromAsia: small mammal surveys in Western China and Kyrgyzstan (1994-2014)

This dataset corresponds to surveys carried out in Asia (western China and Kyrgyzstan) between May 1994 and August 2014 as part of the research expeditions of Patrick Giraudoux and his team. It includes: <ul> <li>Traplines set up and small mammal captured. The corresponding collection of skulls, specimens and tissues has been donated to the Museum National d'Histoire Naturelle, Paris since the 22nd of November 2022.</li> <li>Activity index transect walked to provide abundance estimates over a larger range than possible using trapping methods</li> <li>Miscellaneous supplementary files and trapline photos.</li> </ul> Main files <a href="https://zenodo.org/record/7614879/files/Traplines.txt?download=1">Traplines.txt </a> <a href="https://zenodo.org/api/files/17e03137-dc8a-4b79-bd1c-4a9752fe0a9d/Traplines.txt"> </a> This file is a table that describes the 787 traplines or trap clusters or circumstances by which small mammal specimens have been captured. Some traplines can have  no capture. This is a point to consider when trapping success is computed joining the trapline table to the capture table. Those two tables can be joined using the field 'idLine'. For more details about sampling design, trap types, distance between two traps, etc. please refer to the articles published using those data (see references on this web page). <ul> <li>nameStudysite, name of the survey site</li> <li>country, country ISO code</li> <li>countryName, country name</li> <li>province, province name</li> <li>idLine, trapline ID code: digits #1-2 location ID, digits #3-4 year, digits  #5-6 month, digits #7-8 line number. The two latter digits can be coded on numbers 01, 02, 03... or on letters AA, AB, AC,...</li> <li>sLongitude, longitude of the trapline beginning (for surveys carried out before 1998 included, GPS receivers were not available: geographical coordinates are those of the nearest village, whose name is given in the field 'nameStudysite', and the position of trapline is given relative to this village (see field 'emplacementMethod' = CoordCloserVillage and 'distVillage' and 'azimuthVillage')</li> <li>sLatitude, latitude of the trapline beginning (for surveys carried out before 1998 included, GPS receivers were not available: geographical coordinates are those of the nearest village, whose name is given in the field 'nameStudysite', and the position of trapline is given relative to this village (see field 'emplacementMethod' = CoordCloserVillage and 'distVillage' and 'azimuthVillage')</li> <li>eLongitude, longitude of the trapline end</li> <li>eLatitude, latitude of the trapline beginning</li> <li>cLongitude, longitude of the trapline centroid (for surveys carried out before 1998 included, GPS receivers were not available: geographical coordinates are those of the nearest village, whose name is given in the field 'nameStudysite', and the position of trapline is given relative to this village (see field 'emplacementMethod' = CoordCloserVillage and 'distVillage' and 'azimuthVillage')</li> <li>cLatitude, latitude of the trapline beginning (for surveys carried out before 1998 included, GPS receivers were not available: geographical coordinates are those of the nearest village, whose name is given in the field 'nameStudysite', and the position of trapline is given relative to this village (see field 'emplacementMethod' = CoordCloserVillage and 'distVillage' and 'azimuthVillage')</li> <li>altitude, altitude</li> <li>emplacementMethod, way location is recorded: CoordCloserVillage, distance and direction of the nearest village (used on a time when GPS receivers were nor available); GPS, geographical coordinates; unknown</li> <li>distVillage, distance to the nearest village (in m)</li> <li>azimuthVillage, bearing direction to the nearest village</li> <li>habitat, habitat description</li> <li>campagneObs, month and year of the survey</li> <li>campagneObsBegin, date of the beginning of the survey</li> <li>campagneObsEnd, date of the end of the survey</li> <li>traptype, trap type (see e.g. <a href="https://zenodo.org/record/7614879/files/Traptypes.pdf?download=1">Traptypes.pdf</a> for some  illustrations): <ul> <li>INRA, INRA trap</li> <li>sbbt, small break back trap</li> <li>apporté, brought by people</li> <li>apporté (?), possibly brought by people</li> <li>BBBT, big break back trap</li> <li>sSherman, small Sherman trap</li> <li>BSHERMAN, big Sherman trap</li> <li>CAGE, cage trape</li> <li>tong, tong trap</li> <li>attrapé à la main, caught by hand</li> <li>road, found dead along a road</li> <li>trouvés, found</li> <li>assommoir, deadfall trap</li> <li>tong trap, tong trap</li> <li>bbbt, small break back trap</li> <li>child, brought by a child</li> <li>collet, snare</li> <li>BBBT ou jaw, big break back trap or jaw trap</li> <li>jaw, jaw trap</li> </ul> </li> <li>remarks, remarks</li> <li>nbControlNights, number of control nights (traps were set up during the day and controlled every morning)</li> <li>nbTrapsInstal1, number of traps set up</li> <li>nbTrapsRecov1, number of traps recovered on first control</li> <li>nbTrapsRecov2, number of traps recovered on control #2</li> <li>nbTrapsRecov3, number of traps recovered on control #3</li> <li>nbTrapsRecov4, number of traps recovered on control #4</li> <li>nbTrapsRecov5, number of traps recovered on control #5</li> </ul> <a href="https://zenodo.org/records/14246016/files/capturesV2.txt?download=1">CapturesV2.txt</a> This file is a table that describes the 2178 animals captured.  As a  table, it can be joined to the trapline table using the field 'idLine'. Animals with an idMNHN have had their skulls and sometimes other body parts deposited at the Museum National d'Histoire Naturelle in Paris. <ul> <li>country, country ISO code</li> <li>idCapture, Capture ID code: digits #1-8 trapline ID, see field 'idLine' of <a href="https://zenodo.org/record/7614879/files/Traplines.txt?download=1">Traplines.txt</a> for details, digits #9-10 capture ID in the trapline</li> <li>numControlNight, number of the control night</li> <li>dateControlNight, date of the control night</li> <li>labCode, code for the laboratory</li> <li>speciesField, species as identified in the field; for abbreviations see <a href="https://zenodo.org/record/7614879/files/SpeciesNames.txt?download=1">SpeciesNames.txt </a></li> <li>species, species as confirmed in the lab</li> <li>sex, M male; F female.</li> <li>reproducing T true; F False</li> <li>remarks</li> <li>HeadBodyLength, head-body length</li> <li>UterusDiameter (mm)</li> <li>WholeBodyWetmass, body mass (g)</li> <li>EarLength (mm)</li> <li>ToesForelegNb, number of toes (foreleg)</li> <li>ToesHindlegNb, number of toes (hintleg)</li> <li>ClawLength (mm)</li> <li>TailLength (mm)</li> <li>TailQuiffLength (mm)</li> <li>HindFootLength (mm)</li> <li>CristallineLensNb, number of crystalline lens weighed (sometimes only one could be taken)</li> <li>CristallineLensDrymass, dry mass of the crystalline lens weighed (one or two together according to 'CristallineLensNb'</li> <li>TesticleLength (mm)</li> <li>TesticleWidth (mm)</li> <li>SeminalVesicleLength (mm)</li> <li>SeminalVesicleWidth (mm)</li> <li>PlacentaScarsNb, number of placental scares</li> <li>EmbryosNb, number of embryos</li> <li>idLine, ID of the trapline where the animal was caught</li> <li>idMNHN, MNHN ID</li> </ul> <a href="https://zenodo.org/record/7614879/files/Parasites.txt?download=1">Parasites.txt </a> Livers and general cavity were generally examined visually to identify macroparasites such as cestode kysts or nematodes with a particular attention for Echinococcus multilocularis metacestodes. Additionnal informations on parasites might have been reported in the field 'remarks' of <a href="https://zenodo.org/record/7614879/files/Captures.txt?download=1">Captures.txt</a>. As a  table, it can be joined to the capture table using the field 'idCapture' <ul> <li>country, country ISO code</li> <li>idCapture, Capture ID code see field idCapture of <a href="https://zenodo.org/record/7614879/files/Captures.txt?download=1">Captures.txt</a><a href="https://zenodo.org/api/files/17e03137-dc8a-4b79-bd1c-4a9752fe0a9d/Captures.txt"> </a></li> <li>species, parasite species name: "?" or  "99" = unknown (generally a small unidentifiable white dot);  "CH" =  Capillaria hepatica  (sometimes in full "Capillaria hepatica"); "Em"  =  Echinococcus multilocularis (sometimes in full "Echinococcus multilocularis");   "Taenia" ;  "Taenia crassiceps"; "Taenia taeniformis"</li> <li>number</li> </ul> <a href="https://zenodo.org/record/7614879/files/Transects.zip?download=1">Transects.zip </a> Transects were used to sample open habitats such as grassland, arable fields etc., for species that leave conspicuous activity indices on the ground surface, in order to provide abundance estimates over a larger range than possible using trapping methods. For each transect, 10 paces intervals were surveyed with activity indicators identifiable to species or genus level (including foraging corridors, ground holes, earth tumuli and small mammal faeces) recorded. Except for Sary Mogol, Kyrgyzstan, where transect were walked on twenty 10-paces intervals centred on the nodes of a grid, transect routes were selected opportunistically under accessibility constraints in order to cross the largest portion of each habitat patch. They were recorded via Global Positioning System receivers with an approximate 15 m accuracy. The zip file includes the followings: <ul> <li>Transect file descriptions.rtf, the description of the fields of each transect table</li> <li>Transects_Honlong_2007_09.txt, transects walked near HongLong, China, in September 2007</li> <li>Transects_Narati_2006_09.txt, transects walked near Narati, China, in September 2006</li> <li>Transects_Ningxia_2003_09.txt, transects walked in Ningxia, China, in September 2003</li> <li>Transects_SaryMoghul_2012_2014.txt, transects walked near Sary Moghul, Kyrgyzstan, in May 2012 and August 2014</li> <li>Transects_Serxu_2002_07.txt, transects walked near Serxu, China, in July 2002</li> <li>Transects_Tuotuohe_2006_07.txt, transects walked on the way from Xining to Tuotuo He, China, in July 2006</li> </ul> Supplementary files <a href="https://zenodo.org/record/7614879/files/1MapStudyAreas.jpg?download=1">1MapStudyAreas.jpg</a> Map of the main areas surveyed <a href="https://zenodo.org/record/7614879/files/DNA_sequencing.txt?download=1">DNA_sequencing.txt </a>table of the specimens whose DNA has been sequenced <ul> <li>ind_number, Capture ID code: see field 'idCapture' in <a href="https://zenodo.org/record/7614879/files/Captures.txt?download=1">Captures.txt </a></li> <li>ID_lab, lab identification label</li> <li>Species_DNA, species as identified by DNA sequencing</li> <li>laboratory, people and/or lab who performed the analysis</li> <li>ID morphometry/karyotype, species as identified by morphology + karyotype</li> </ul> <a href="https://zenodo.org/record/7614879/files/Photos_traplines.zip?download=1">Photos_traplines.zip</a> Photos of traplines and habitats for the following surveys <ul> <li>Honglong, CN, September 2007</li> <li>Maerkang, CN, September 2005</li> <li>Narati, CN, September 2006</li> <li>Ningxia, CN, September 2003, July 2012</li> <li>Rantang, CN, June 2004</li> <li>Sary Mogol, KG, April 2008</li> <li>Serxu, CN, July 2002</li> </ul> <a href="https://zenodo.org/record/7614879/files/SpeciesNames.txt?download=1">SpeciesNames.txt</a> Abbreviations, latin, English, French names of species <ul> <li>Code, code on 4 digits</li> <li>Nom latin, latin name</li> <li>Nom commun (Anglais), common name (English)</li> <li>Nom commun (Français), common name (French)</li> <li>Remark</li> </ul> <a href="https://zenodo.org/record/7614879/files/Small_mammal_measurements.pdf?download=1">Small_mammal_measurements.pdf</a> Method for small mammal sampling and measurements. <a href="https://zenodo.org/record/7614879/files/TrapLocationCodes.txt?download=1">TrapLocationCodes.txt</a> Codes for the location of traplines <ul> <li>Location, location name</li> <li>Symbol, symbol (first two digits of idLine in <a href="https://zenodo.org/record/7614879/files/Traplines.txt?download=1">Traplines.txt </a></li> <li>Province, province name</li> <li>Trapping, remarks about sampling design</li> </ul> <a href="https://zenodo.org/record/7614879/files/Traptypes.pdf?download=1">Traptypes.pdf</a>  Samples of small and big break back traps, tong trap and INRA trap.

opencc-by-4.0Aug 2022View details →

Text-fig. 4. Graphical visualization of Phytogeographic Reference Regions Assessment (PRRA) of nearest living relative genera of fossil-taxa from late Early Miocene Wiesa assemblage in eastern Germany. Analysis yields only NLRs which have modern distribution area (partly) in E and SE Asia. For relationships of fossil-taxa to nearest living relatives or ecological equivalents, see Tab. 6; taxa used for analysis marked with asterisks. Three geographic resolutions conducted: a – grid with 1.5° latitude/longitude resolution, b – grid with 2°, c – grid with 3°; similarity column indicates cooccurrences of genera of nearest living relatives in single grid box. Maximum value in our analysis: grid box marked with arrow in map a, located in western Yunnan Province, P. R. China and southern Kachin Province, NE Myanmar (east of Myitkyina city), area with 97.371 7–98.874 2° longitude and 24.586 7–25.837 5° latitude, yields 23 co-occurring species of 13 genera (Tab. 7). in Assessment Of Phytogeographic Reference Regions For Cenozoic Vegetation: A Case Study On The Miocene Flora Of Wiesa (Germany)

Text-fig. 4. Graphical visualization of Phytogeographic Reference Regions Assessment (PRRA) of nearest living relative genera of fossil-taxa from late Early Miocene Wiesa assemblage in eastern Germany. Analysis yields only NLRs which have modern distribution area (partly) in E and SE Asia. For relationships of fossil-taxa to nearest living relatives or ecological equivalents, see Tab. 6; taxa used for analysis marked with asterisks. Three geographic resolutions conducted: a – grid with 1.5° latitude/longitude resolution, b – grid with 2°, c – grid with 3°; similarity column indicates cooccurrences of genera of nearest living relatives in single grid box. Maximum value in our analysis: grid box marked with arrow in map a, located in western Yunnan Province, P. R. China and southern Kachin Province, NE Myanmar (east of Myitkyina city), area with 97.371 7–98.874 2° longitude and 24.586 7–25.837 5° latitude, yields 23 co-occurring species of 13 genera (Tab. 7).

FIGURE 50 in Inventory of the Carabid Beetle Fauna of the Gaoligong Mountains, Western Yunnan Province, China: Species of the Tribe Broscini (Coleoptera: Carabidae).

FIGURE 50. Chart illustrating the co-occurence (syntopy) of broscine species in samples from the same habitats and at the same sites in the Gaoligong Shan region. Incidents of syntopy marked in black represent confirmed co-occurrence, those marked in grey not confirmed by records but likely.

FIGURE 49 in Inventory of the Carabid Beetle Fauna of the Gaoligong Mountains, Western Yunnan Province, China: Species of the Tribe Broscini (Coleoptera: Carabidae).

FIGURE 49. Chart illustrating the altitudinal ranges of broscine species represented in the Gaoligong Shan region. Green bars mark the elevational range recorded for each species.

FIGURE 48 in Inventory of the Carabid Beetle Fauna of the Gaoligong Mountains, Western Yunnan Province, China: Species of the Tribe Broscini (Coleoptera: Carabidae).

FIGURE 48. Chart showing the representation of broscine species in project-designated Core Areas (see Fig. 3) in the Gaoligong Shan region.

FIGURE 47 in Inventory of the Carabid Beetle Fauna of the Gaoligong Mountains, Western Yunnan Province, China: Species of the Tribe Broscini (Coleoptera: Carabidae).

FIGURE 47. Map showing approximate known overall geographical distributions of broscine species occurring in the Gaoligong Shan region as well as outside the study area. a. Broscus punctatus (Dejean); b. Eobroscus bhutanensis Morvan; c. Broscosoma ribbei Putzeys; d. Broscosoma holomarginatum sp. nov. Modified from Wikimedia Commons, World Atlas of the World, at URL: http://upload.wikimedia.org/wikipedia/commons/8/8f/Whole_world_-_land_and_oceans_12000.jpg. Scale line = 500 k

FIGURE 46 in Inventory of the Carabid Beetle Fauna of the Gaoligong Mountains, Western Yunnan Province, China: Species of the Tribe Broscini (Coleoptera: Carabidae).

FIGURE 46. Photographs of habitats for broscine species in the Gaoligong Shan region. a. Siran Wang, 0.2 km above confluence with Dulong Jiang, 1720 m, 28.013°/ E098.321º, Dulongjiang Township, Gongshan County, Yunnan (habitat for Broscosoma resbecqi sp. nov.); b. Nankang Yakou, 2130 m, 24.828°/98.767°, Longyang County, Yunnan (habitat for Broscosoma ribbei Putzeys and Broscus punctatus (Dejean). Photos by David H. Kavanaugh.