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25
datasets available to search
ShareScore release 0.9.0
Dataset results
25 results for “widefield”
Synthetic images of cell nuclei in widefield microscopy
<p>The images were generated by <a href="http://www.cs.tut.fi/sgn/csb/simcep/tool.html">SIMCEP</a>, a widefield fluorescence microscopy biological images simulator.</p> <p>The dataset is used to demonstrate the execution of image analysis workflows with BIAFLOWS on a local machine from a jupyter notebook.</p>
Widefield and Confocal brain images derived from experimental Middle Cerebral Artery occlusion (MCAo) in mice.
<p>This deposit contains a series of widefield and confocal brain images derived from research on cerebral ischemia carried out by the Laboratory of Neurovascular Interactions (https://elalilab.com/) at the Université Laval, Québec (Canada) directed by Dr. Ayman ElAli (<a href="mailto:ayman.el-ali@crchudequebec.ulaval.ca">ayman.el-ali@crchudequebec.ulaval.ca</a>). The experiments, data processing, and organization were performed by Daniel Manrique-Castano, former postdoctoral fellow and current research data curation officer at the Digital Research Alliance of Canada (<a href="https://daniel-manrique.github.io/">https://daniel-manrique.github.io/manrique; </a>dmanriquecastano@gmail.com).</p> <p>Given the complexity of the whole image bundle, images from the same experiment were compressed into zip files. Complementary data is available at the <strong>Open Science Framework (OSF) repository</strong> (<span><a href="https://osf.io/74mqn/" target="_blank" rel="noopener">10.17605/OSF.IO/74MQN</a>), and reproducible workflows for image processing and analysis are available on <strong>GitHub</strong> (<a href="https://doi.org/10.5281/zenodo.13948420" target="_blank" rel="noopener">10.5281/zenodo.13948420</a>)</span></p> <p> </p> <p><strong>Naming conventions for datasets</strong> (taking as an example Widefield_5x_Ipsilateral_KO_CD31-ColIV-Iba1.zip)</p> <p>Widefield: Imaging type performed (available strings = Confocal, Widefield). </p> <p>5x: Objective magnification (Available strings = 5x, 10x, 20x, 40x). </p> <p>Ipsilateral: Iaged region (Available strings = ROIs [Regions of interest], Whole [whole brain], Ipsilateral [ischemic hemisphere]). </p> <p>KO: imaging performed in PDGFRB_KLF4-KO mice (if absent, imaging performed in PDGFRB_TdTomato mice) </p> <p>CD31-ColIV-Iba1: Imaged markers (available strings = multiple, depending on the experiment). </p> <p> </p> <p><strong>Important: </strong>Each .zip file contains a README file specific to each dataset, describing the experimental conditions, naming conventions of individual images and links to additional files used for image processing.</p> <p> </p> <p> </p>
Raw data for: Self-Referencing for Quasi Shot-Noise-Limited Widefield Transient Microscopy
<p>The repository shares the data used to produce the figures in the paper "Self-Referencing for Quasi Shot-Noise-Limited Widefield Transient Microscopy", submitted 2024 in Optics Express. </p> <p>The upload includes for each Figure the raw and processed self-referenced transient normalized transmission data, (T_on-T_off) / T_off, from which all results and statistics are deduced.</p>
Guinea Pig Skin & Tick Bite Site - Widefield H&E Reference Images
<p>Underlying H&E stained guinea pig skin from control (unbitten) and tick-bitten skin. Ticks: nymphal <em>Ixodes scapularis</em>. These images are reference files for the positive and negative mode MALDI-FTICR (MSI) images collected for lipids. Collected on a Zeiss AxioImager M2 using an in-built default stitching function. Native files: .czi can be opened in Zen Lite or Zen Pro.</p>
Widefield Angiography Guided Targeted-retinal Photocoagulation Combined With Anti VEgf Intravitreal Injections for the Treatment of Ischemic Central Retinal Vein Occlusion, Hemi Retinal Vein Occlusion
ClinicalTrials.gov study NCT01710839. IPD Sharing: Not stated. Countries: 1. Publications: 14.
High time resolution search for prompt radio emission from the long GRB 210419A with the Murchison Widefield Array
<p>The time series of Stokes parameters in the PSRFITS format formed from the MWA data at the position of GRB 210419A.</p>
Data for injection and recovery test performed in the paper "Improved Sensitivity for Space Domain Awareness Observations with the Murchison Widefield Array"
<p>This repo contains the script and the pool of noise images used to perform the injection and recovery test in the paper titled "Improved Sensitivity for Space Domain Awareness Observations with the Murchison Widefield Array"</p>
Synergistic olfactory processing for social plasticity in desert locusts (widefield imaging sub-repo-04)
<p>Main Zenodo repository: https://doi.org/10.5281/zenodo.10931394</p> <p>Data deposited here: Physiology\Cal520_Widefield\COL_HEX3_MOL_N2_OC3L2_ZHAE2\solitarious</p>
Synergistic olfactory processing for social plasticity in desert locusts (widefield imaging sub-repo-03)
<p>Main Zenodo repository: https://doi.org/10.5281/zenodo.10931394</p> <p>Data deposited here: Physiology\Cal520_Widefield\COL_HEX3_MOL_N2_OC3L2_ZHAE2\gregarious</p>
Synergistic olfactory processing for social plasticity in desert locusts (widefield imaging sub-repo-02)
<p>Main Zenodo repository: https://doi.org/10.5281/zenodo.10931394</p> <p>Data deposited here: Physiology\Cal520_Widefield\BERRYLEAF_COL_MOL_N2_ZHAE2\solitarious</p>
Synergistic olfactory processing for social plasticity in desert locusts (widefield imaging sub-repo-01)
<p>Main Zenodo repository: https://doi.org/10.5281/zenodo.10931394</p> <p>Data deposited here: Physiology\Cal520_Widefield\BERRYLEAF_COL_MOL_N2_ZHAE2\gregarious</p>
Diabetic Retinopathy Classification: ETDRS 7-fields vs Widefield Imaging (ClarusDR)
ClinicalTrials.gov study NCT05746975. IPD Sharing: Not stated. Countries: 1. Publications: 15.
Evaluation of Diabetic Retinopathy Using Ultra-Widefield Fundus Images Compared With Two-Field Fundus Images
ClinicalTrials.gov study NCT05836194. IPD Sharing: Not stated. Countries: 1. Publications: 0.
CLEAR SIGHT: A Trial of Non-Mydriatic Ultra-Widefield Retinal Imaging to Screen for Diabetic Eye Disease
ClinicalTrials.gov study NCT02579837. IPD Sharing: NO. Countries: 1. Publications: 1.
DeepBacs – Staphylococcus aureus widefield segmentation dataset
<p>Training and test images of live <em>S. aureus</em> cells for the task of cell segmentation.</p> <p>Additional information can be found in the <a href="https://github.com/HenriquesLab/DeepBacs/wiki">github wiki</a>.</p> <p>The example shows the bright field and Nile Red fluorescence image of live <em>S. aureus </em>cells, as well as the manually annotated segmentation mask.</p> <p> </p> <p><strong>Data type</strong>: Paired DIC/fluorescence and segmented mask images</p> <p><strong>Microscopy data type</strong>: 2D widefield images (DIC and fluorescence)</p> <p><strong>Microscope</strong>: GE HealthCare Deltavision OMX system (with temperature and humidity control, 37°C) equipped with an Olympus 60x 1.42NA Oil immersion objective and 2 PCO Edge 5.5 sCMOS cameras (one for DIC, one for fluorescence)</p> <p><strong>Cell type</strong>: <em>S. aureus</em> strain JE2 grown under agarose pads</p> <p><strong>File format</strong>: .tif (16-bit)</p> <p><strong>Image size</strong>: 512 x 512 px² (80 nm/px)<br> <strong>Image preprocessing</strong>: Raw images were manually annotated by drawing ellipses in the NR fluorescence image and segmented images were created using the LOCI plugin (“ROI Map”). For training, images and masks were quartered into four 256 x 256 px² patches.</p> <p> </p> <p><strong>Author(s)</strong>: Pedro Matos Pereira<sup>1,2</sup>, Mariana Pinho<sup>1,3</sup></p> <p><strong>Contact email</strong>: <a href="mailto:pmatos@itqb.unl.pt">pmatos@itqb.unl.pt</a> and <a href="mailto:mgpinho@itqb.unl.pt">mgpinho@itqb.unl.pt</a></p> <p> </p> <p><strong>Affiliation</strong>: </p> <p>1) Bacterial Cell Biology, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Oeiras, Portugal</p> <p>2) ORCID: https://orcid.org/0000-0002-1426-9540</p> <p>3) ORCID: https://orcid.org/0000-0002-7132-8842</p>
Single virus fingerprinting by widefield interferometric defocus-enhanced mid-infrared photothermal microscopy
<p>Raw imaging data, MATLAB codes and guidelines for BEM simulation in the maniscript.</p>
Prospective Geometric Analysis of Ultra-Widefield OCTA Characteristics in Central Serous Chorioretinopathy Patients
ClinicalTrials.gov study NCT07347119. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Ultra-Widefield Fluorescein Angiography-Based Targeted Retinal Photocoagulation Versus Conventional Panretinal Photocoagulation in the Preservation of Visual Function and Regression of Proliferative D
ClinicalTrials.gov study NCT06653361. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Widefield Confocal Scanning Laser Ophthalmoscope Optimized for Pediatric and Neonatal Imaging
ClinicalTrials.gov study NCT06177639. IPD Sharing: YES. Countries: 1. Publications: 0.
Widefield Fluorescence and Reflectance Imaging Systems and Oral Tissue Samples in Monitoring Participants at Risk for Developing Oral Cancer
ClinicalTrials.gov study NCT00542373. IPD Sharing: Not stated. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.