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UC Santa Barbara Invertebrate Zoology Collection (UCSB-IZC) Data Archive and Biodiversity Dataset Graph hash://md5/10663911550bb52a0f5741993f82db9d hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c
<p>A biodiversity dataset graph: UCSB-IZC</p> <p>The intended use of this archive is to facilitate (meta-)analysis of the UC Santa Barbara Invertebrate Zoology Collection (UCSB-IZC). UCSB-IZC is a natural history collection of invertebrate zoology at Cheadle Center of Biodiversity and Ecological Restoration, University of California Santa Barbara.</p> <p>This dataset provides versioned snapshots of the UCSB-IZC network as tracked by Preston [2,3] between 2021-10-08 and 2021-11-04 using [preston track "https://api.gbif.org/v1/occurrence/search/?datasetKey=d6097f75-f99e-4c2a-b8a5-b0fc213ecbd0"].</p> <p>This archive contains 14349 images related to 32533 occurrence/specimen records. See included sample-image.jpg and their associated meta-data sample-image.json [4].</p> <p>The images were counted using:</p> <p>$ preston cat hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c\<br> | grep -o -P ".*depict"\<br> | sort\<br> | uniq\<br> | wc -l</p> <p>And the occurrences were counted using:</p> <p>$ preston cat hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c\<br> | grep -o -P "occurrence/([0-9])+"\<br> | sort\<br> | uniq\<br> | wc -l</p> <p>The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance files and data files. Only two index and provenance files are included and have been individually included in this dataset publication. Index files provide a way to links provenance files in time to establish a versioning mechanism.</p> <p>To retrieve and verify the downloaded UCSB-IZC biodiversity dataset graph, first download preston-*.tar.gz. Then, extract the archives into a "data" folder. Alternatively, you can use the Preston [2,3] command-line tool to "clone" this dataset using:</p> <p>$ java -jar preston.jar clone --remote https://archive.org/download/preston-ucsb-izc/data.zip/,https://zenodo.org/record/5557670/files,https://zenodo.org/record/5660088/files/</p> <p>After that, verify the index of the archive by reproducing the following provenance log history:</p> <p>$ java -jar preston.jar history<br> <urn:uuid:0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36> .<br> <hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c> <http://purl.org/pav/previousVersion> <hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36> .</p> <p>To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.</p> <p>$ java -jar preston.jar verify<br> hash://sha256/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c file:/home/jhpoelen/ucsb-izc/data/ce/1d/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c OK CONTENT_PRESENT_VALID_HASH 66438 hash://sha256/ce1dc2468dfb1706a6f972f11b5489dc635bdcf9c9fd62a942af14898c488b2c<br> hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844 file:/home/jhpoelen/ucsb-izc/data/f6/8d/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844 OK CONTENT_PRESENT_VALID_HASH 4093 hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844<br> hash://sha256/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef file:/home/jhpoelen/ucsb-izc/data/3e/70/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef OK CONTENT_PRESENT_VALID_HASH 5746 hash://sha256/3e70b7adc1a342e5551b598d732c20b96a0102bb1e7f42cfc2ae8a2c4227edef<br> hash://sha256/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b file:/home/jhpoelen/ucsb-izc/data/99/58/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b OK CONTENT_PRESENT_VALID_HASH 6147 hash://sha256/995806159ae2fdffdc35eef2a7eccf362cb663522c308aa6aa52e2faca8bb25b</p> <p>Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston".</p> <p>Files in this data publication:</p> <p>--- start of file descriptions ---</p> <p>-- description of archive and its contents (this file) --<br> README</p> <p>-- executable java jar containing preston [2,3] v0.3.1. --<br> preston.jar</p> <p>-- preston archive containing UCSB-IZC (meta-)data/image files, associated provenance logs and a provenance index --<br> preston-[00-ff].tar.gz</p> <p>-- individual provenance index files --<br> 2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a</p> <p>-- example image and meta-data --<br> sample-image.jpg (with hash://sha256/916ba5dc6ad37a3c16634e1a0e3d2a09969f2527bb207220e3dbdbcf4d6b810c)<br> sample-image.json (with hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844)</p> <p>--- end of file descriptions ---</p> <p><br> References</p> <p>[1] Cheadle Center for Biodiversity and Ecological Restoration (2021). University of California Santa Barbara Invertebrate Zoology Collection. Occurrence dataset https://doi.org/10.15468/w6hvhv accessed via GBIF.org on 2021-11-04 as indexed by the Global Biodiversity Informatics Facility (GBIF) with provenance hash://sha256/d5eb492d3e0304afadcc85f968de1e23042479ad670a5819cee00f2c2c277f36 hash://sha256/80c0f5fc598be1446d23c95141e87880c9e53773cb2e0b5b54cb57a8ea00b20c.<br> [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 .<br> [3] MJ Elliott, JH Poelen, JAB Fortes (2020). Toward Reliable Biodiversity Dataset References. Ecological Informatics. https://doi.org/10.1016/j.ecoinf.2020.101132<br> [4] Cheadle Center for Biodiversity and Ecological Restoration (2021). University of California Santa Barbara Invertebrate Zoology Collection. Occurrence dataset https://doi.org/10.15468/w6hvhv accessed via GBIF.org on 2021-10-08. https://www.gbif.org/occurrence/3323647301 . hash://sha256/f68d489a9275cb9d1249767244b594c09ab23fd00b82374cb5877cabaa4d0844 hash://sha256/916ba5dc6ad37a3c16634e1a0e3d2a09969f2527bb207220e3dbdbcf4d6b810c</p>
Fig. 4 in The Lampyridae of the Achille Costa's (1823-1898) collection, preserved at the Zoological Museum of Naples (Italy)
Fig. 4. Achille Costa Collection (Zoological Museum of Naples). A: Paralectotypi, habitus; B: Paralectotypus (card number: 18), original label.
Fig. 3 in The Lampyridae of the Achille Costa's (1823-1898) collection, preserved at the Zoological Museum of Naples (Italy)
Fig. 3. Achille Costa Collection (Zoological Museum of Naples). A: Paralectotypus, habitus; B: Paralectotypus, original label.
Fig. 1 in The Lampyridae of the Achille Costa's (1823-1898) collection, preserved at the Zoological Museum of Naples (Italy)
Fig. 1. Achille Costa Collection (Zoological Museum of Naples). A: label of the entomological box containing the Lampyridae; B: overview of the entomological box containing the Lampyridae; C: detail of the specimens of the family Lampyridae. (The numbers are progressive and do not correspond to the card numbers.)
Figure 2 in Archival sea turtles in National Zoological Collections of Zoological Survey of India
Figure 2. Representatives of the archival Sea turtle specimens (the Green Sea Turtle, Chelonia mydas) preserved in Zoological Survey of India, Kolkata. A. Hatchling of C. mydas, Reg. No. ZSI 14544 (dorsal view, wet collection). B. Hatchling of C. mydas, Reg. No. ZSI 14543 (ventral view, wet collection). C. Eggs of C. mydas (wet collection). D. Skull of C. mydas, Reg. No. ZSI 389 (1404) (lateral view, dry collection). E. Adult individuals of C. mydas, Reg. No. ZSI 22489 (lateral view, wet collection).
Figure 1 in Archival sea turtles in National Zoological Collections of Zoological Survey of India
Figure 1. Representatives of the archival Sea turtle specimens (the Hawksbill Sea Turtle, Eretmochelys imbricata) preserved in Amphibia and Reptilia gallery of Indian museum, Kolkata and morphometric measurements. HD= Head diameter, FL= Forelimb length, HL= Hindlimb length, CCL=Curved carapace length, CPL= Curved plastron length, CCW= Curved carapace width, CPW= Curved plastron width, TL= Total length.
Figs 49-52 in New and little known Epilamprinae (Dictyoptera: Blaberidae) from the collections of the Muséum d'histoire naturelle de Genève and the Zoological Institute of Saint Petersburg. Part 4
Figs 49-52. Notolampra gibba (Thunberg, 1826), female. (49) Abdominal apex, dorsal view. (50) Genital plate, ventral view. (51) Abdominal apex and right tergal processes, ventral view. (52) Ovipositor and adjacent structures, ventral view, basivalvula broken. Dotted areas show membranous parts, except for valves of ovipositor. Abbreviations: bsv., gg., Par., pl., teIX., v.I., v.II., v.III., vs. - see chapter "abbreviation used in figures", for details see text. Scale bars 1 mm: a (49), b (50), c (51), d (52).
Figs 25-35. Molytria vegranda Roth, 1999 in New and little known Epilamprinae (Dictyoptera: Blaberidae) from the collections of the Muséum d'histoire naturelle de Genève and the Zoological Institute of Saint Petersburg. Part 4
Figs 25-35. Molytria vegranda Roth, 1999, male. (25-26) Left hind tarsus, ventral (25) and inner (26) view. (27) Abdominal apex, dorsal view. (28) Hypandrium, ventral view. (29) Sclerites L2D, L4U and outlines of caudal part of hypandrium, dorsal view. (30-31) Right phallomere, ventral (30) and dorsal (31) view. (32) Apical part of sclerite L2D, dorsal view. (33) Sclerite L3. (34, 35) Apex of sclerite L3. Dotted areas show membranous parts. Abbreviations: a.s., b.L2D, b.L3, c.p.R1T, f.s., L4U, R2, R3, R4, R5, s.t., scl.a. - see chapter "abbreviation used in figures", for details see text. Scale bars 1 mm: a (24-25), b (27-29), c (30-31), d (32), e (33), f (34-35).
Figs 1-8 in New and little known Epilamprinae (Dictyoptera: Blaberidae) from the collections of the Muséum d'histoire naturelle de Genève and the Zoological Institute of Saint Petersburg. Part 4
Figs 1-8. Placoblatta semialata sp. nov., male holotype (1-5) and female paratype (6-8). (1) Facial part of head. (2, 6) Anterior part of body, dorsal view. (3) Right fore leg, ventral view. (4, 5) Right hind tarsus, ventral (4) and outer (5) view. (7-8) Abdominal apex, dorsal (7) and ventral (8) view. The black parallelogram in Fig. 5 is a pin. Abbreviations: a.s. - see chapter "abbreviation used in figures", for details see text. Not to scale.
Figs 36-48 in New and little known Epilamprinae (Dictyoptera: Blaberidae) from the collections of the Muséum d'histoire naturelle de Genève and the Zoological Institute of Saint Petersburg. Part 4
Figs 36-48. Notolampra gibba (Thunberg, 1826), male. (36) Facial part of head. (37) Head, pronotum and basal part of left tegmen, dorsal view. (38) Abdominal tergites VIII-IX, dorsal view. (39) Abdominal apex, dorsal view. (40) Paraprocts and adjacent structures, ventral view. (41) Hypandrium, ventral view. (42-43) Right phallomere, dorsal (42) and ventral (43) view. (44) Sclerite L2D, dorsal view. (45-46) Apical part of sclerite L2D, ventral (45) and dorsal (46) view. (47) Sclerite L3. (48) Apex of sclerite L3. Dotted areas show dark colour (37) or membranous parts (38-48). Abbreviations: ap.scl., b.L2D, b.L3, c.p.R1T, R2, R3, R4, R5, tr.l. - see chapter "abbreviation used in figures", for details see text. Scale bars 1 mm: a (36), b (37), c (38-39), d (40), e (41), f (42-43), g (44), h (45-46), i (47-48).
Figure 1 in Non-native Chelonians in the National Zoological Collections of Zoological Survey of India
Figure 1. Representative of exotic Chelonians (the common snapping turtle, Chelydra serpentina) preserved in Zoological Survey of India, Kolkata, species tag and morphometric measurements. HL = Head Length, SCL = Straight Carapace Length, SCW = Straight Carapace Width, CCL= Curved Carapace Length, CCW- Curved Carapace Width, SPL = Straight Plastron Length, SPW= Straight Plastron Width, BD = Body Depth.
Рис. 1. 1 — берег искусственного воΑоема на окраине посеΛка Витязь; 2 — северный скΛон горы Туманная; 3 — Amphipyra tripartita Butler, 1878, северный скΛон горы Туманная; 4 — Amphipyra tripartita Butler, 1878, ♂, Japonia, Ashia, ex coll. Erschov, коΛΛекция ЗИН; 5 — Oligonyx vulnerata (Butler, 1878); 6 — Cryphia bryophasma (Boursin, 1951); 7 — Cryphia griseola (Nagano, 1918); 8 — Stenoloba assimilis (Warren, 1909); 9 — Hadena aberrans (Eversmann, 1856) Fig. 1. 1 — the shore of an artificial reservoir on the outskirts of the Vityaz village; 2 — the northern slope of mount Tumannaya; 3 — Amphipyra tripartita Butler, 1878, the northern slope of mount Tumannaya; 4 — Amphipyra tripartita Butler, 1878, ♂, Japonia, Ashia, ex coll. Erschov, collection of the Zoological Institute RAS; 5 — Oligonyx vulnerata (Butler, 1878); 6 — Cryphia bryophasma (Boursin, 1951), the outskirts of the Vityaz village; 7 — Cryphia griseola (Nagano, 1918); 8 — Stenoloba assimilis (Warren, 1909); 9 — Hadena aberrans (Eversmann, 1856) in Amphipyra tripartita Butler, 1878 - new species for the fauna of Russia and other Noctuidae (Insecta, Lepidoptera), found in Gamov peninsula in September 2022
Рис. 1. 1 — берег искусственного воΑоема на окраине посеΛка Витязь; 2 — северный скΛон горы Туманная; 3 — Amphipyra tripartita Butler, 1878, северный скΛон горы Туманная; 4 — Amphipyra tripartita Butler, 1878, ♂, Japonia, Ashia, ex coll. Erschov, коΛΛекция ЗИН; 5 — Oligonyx vulnerata (Butler, 1878); 6 — Cryphia bryophasma (Boursin, 1951); 7 — Cryphia griseola (Nagano, 1918); 8 — Stenoloba assimilis (Warren, 1909); 9 — Hadena aberrans (Eversmann, 1856) Fig. 1. 1 — the shore of an artificial reservoir on the outskirts of the Vityaz village; 2 — the northern slope of mount Tumannaya; 3 — Amphipyra tripartita Butler, 1878, the northern slope of mount Tumannaya; 4 — Amphipyra tripartita Butler, 1878, ♂, Japonia, Ashia, ex coll. Erschov, collection of the Zoological Institute RAS; 5 — Oligonyx vulnerata (Butler, 1878); 6 — Cryphia bryophasma (Boursin, 1951), the outskirts of the Vityaz village; 7 — Cryphia griseola (Nagano, 1918); 8 — Stenoloba assimilis (Warren, 1909); 9 — Hadena aberrans (Eversmann, 1856)
Рис. 1. 1 — Eriogyna koreanis (Brechlin, 2009) (Saturniidae), ♂, Казакевичево, из коΛΛекции ЗооΛогического иссΛеΑоватеΛьского музея АΛексанΑра Кёнига (Германия). Фото В. В. ЗоΛотухина; 2 — Nola confusalis; 3 — Negritothripa hampsoni; 4 — Autographa urupina; 5 — Athetis lapidea; 6–7 — Euplexia koreaeplexia; 8 — Nonagria puengeleri; 9 — Lacanobia oleracea; 10 —Actebia squalida Fig. 1. 1 — Eriogyna koreanis (Brechlin, 2009) (Saturniidae), ♂, Kazakevichevo (Kassakewitschevo), collection of the Zoological Research Museum Alexander Koenig (Germany). Photo by V. V. Zolotuhin; 2 — Nola confusalis; 3 — Negritothripa hampsoni; 4 — Autographa urupina; 5 — Athetis lapidea; 6–7 — Euplexia koreaeplexia; 8 — Nonagria puengeleri; 9 — Lacanobia oleracea; 10 —Actebia squalida in Additions To The Macromoth Fauna (Insecta, Lepidoptera, Macroheterocera) Of Bolshekhekhtsyrsky Nature Reserve (Khabarovsky Krai)
Рис. 1. 1 — Eriogyna koreanis (Brechlin, 2009) (Saturniidae), ♂, Казакевичево, из коΛΛекции ЗооΛогического иссΛеΑоватеΛьского музея АΛексанΑра Кёнига (Германия). Фото В. В. ЗоΛотухина; 2 — Nola confusalis; 3 — Negritothripa hampsoni; 4 — Autographa urupina; 5 — Athetis lapidea; 6–7 — Euplexia koreaeplexia; 8 — Nonagria puengeleri; 9 — Lacanobia oleracea; 10 —Actebia squalida Fig. 1. 1 — Eriogyna koreanis (Brechlin, 2009) (Saturniidae), ♂, Kazakevichevo (Kassakewitschevo), collection of the Zoological Research Museum Alexander Koenig (Germany). Photo by V. V. Zolotuhin; 2 — Nola confusalis; 3 — Negritothripa hampsoni; 4 — Autographa urupina; 5 — Athetis lapidea; 6–7 — Euplexia koreaeplexia; 8 — Nonagria puengeleri; 9 — Lacanobia oleracea; 10 —Actebia squalida
Figures 50-57. 50 in The importance of biological collections for public health: The case of the Triatominae collection of the Museum of the Institute of Agricultural Zoology "Francisco Fernández Yépez", Venezuela
Figures 50-57. 50. Male of Triatoma maculata, 51. Female of Triatoma maculata, 52. Male of Triatoma nigromaculata, 53. Female of Triatoma nigromaculata, 54. Male of Triatoma patagonica, 55. Male of Triatoma platensis, 56. Female of Triatoma platensis, 57. Female of Triatoma protracta. Bar: 10 mm.
Figures 43-49.43 in The importance of biological collections for public health: The case of the Triatominae collection of the Museum of the Institute of Agricultural Zoology "Francisco Fernández Yépez", Venezuela
Figures 43-49.43. Female of Triatoma delpontei, 44. Male of Triatoma dimidiata, 45. Female of Triatoma dimidiata, 46. Female of Triatoma eratyrusiformis, 47. Female of Triatoma guasayana, 48. Male of Triatoma infestans, 49. Female of Triatoma infestans. Bar: 10 mm.
Figures 22-28. 22 in The importance of biological collections for public health: The case of the Triatominae collection of the Museum of the Institute of Agricultural Zoology "Francisco Fernández Yépez", Venezuela
Figures 22-28. 22. Male of Triatoma longipennis, 23. Female of Triatoma longipennis, 24. Male of Nesotriatoma confusa, 25. Female of Nesotriatoma confusa, 26. Male of Triatoma picturatus, 27. Male of Triatoma pallidipennis, 28. Female of Triatoma pallidipennis. Bar: 10 mm.
Figures 1-6. 1 in The importance of biological collections for public health: The case of the Triatominae collection of the Museum of the Institute of Agricultural Zoology "Francisco Fernández Yépez", Venezuela
Figures 1-6. 1. Female of Belminus pittieri, 2. Male of Belminus rugulosus, 3. Female of Belminus rugulosus, 4. Female of Cavernicola pilosa, 5. Male Psammolestes arthuri, 6. Female Psammolestes arthuri. Bar: 10 mm.
Figures 7-14. 7 in The importance of biological collections for public health: The case of the Triatominae collection of the Museum of the Institute of Agricultural Zoology "Francisco Fernández Yépez", Venezuela
Figures 7-14. 7. Male of Rhodnius brethesi, 8. Female of Rhodnius brethesi, 9. Male of Rhodnius neglectus, 10. Female of Rhodnius neglectus, 11. Male of Rhodnius neivai, 12. Female of Rhodnius neivai, 13. Fale of Rhodnius pictipes, 14. Female of Rhodnius pictipes. Bar: 10 mm.
Linked collectors and determiners for: Types of Thyatirinae (Lepidoptera: Drepanidae) in the collection of the Zoological Institute of the Russian Academy of Sciences.
Natural history specimen data linked to collectors and determiners held within, "Types of Thyatirinae (Lepidoptera: Drepanidae) in the collection of the Zoological Institute of the Russian Academy of Sciences". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/63db7ca1-2866-4510-9ce8-b9ad97f41703">https://bionomia.net/dataset/63db7ca1-2866-4510-9ce8-b9ad97f41703</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/63db7ca1-2866-4510-9ce8-b9ad97f41703">https://gbif.org/dataset/63db7ca1-2866-4510-9ce8-b9ad97f41703</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: KUBI Invertebrate Zoology Collection.
Natural history specimen data linked to collectors and determiners held within, "KUBI Invertebrate Zoology Collection". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/95c6d414-f762-11e1-a439-00145eb45e9a">https://bionomia.net/dataset/95c6d414-f762-11e1-a439-00145eb45e9a</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/95c6d414-f762-11e1-a439-00145eb45e9a">https://gbif.org/dataset/95c6d414-f762-11e1-a439-00145eb45e9a</a>. Formatted as a Frictionless Data package.
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