C. elegans Freezing Media Calculator

Scale the WormBook S-buffer freezing solution recipe for any number of cryovials and get the slow-cool freezedown protocol with recovery test plate recommendations.

C. elegans StrainsWormBookClient-Side
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Load example celegans freezing media calculator data to see the full workflow

Freezedown Inputs

Standard freezedown is 4–10 vials per strain for redundancy.

Worms + freezing solution at 1:1 — half the vial is buffer.

Freezing Solution & Protocol

Total solution
16.5 mL
20 vials × 1.5 mL × 0.5 × 1.1
Total vials
20
1.5 mL each
Recovery test plates
2
~1 plate per 10 vials

S-buffer Freezing Solution Recipe

ReagentQuantity
NaCl0.097 g
1 M K-phosphate buffer (pH 6)0.83 mL
Cholesterol stock (5 mg/mL in ethanol)0.017 mL
Glycerol4.95 mL
Distilled water (to volume)10.71 mL

Freezing Protocol Summary

  1. Mix worms 1:1 with freezing solution in cryovials.
  2. Place vials in a styrofoam rack at -80 °C for slow cooling (~1 °C/min).
  3. Leave overnight at -80 °C, then transfer to liquid N₂ for long-term storage.
  4. Thaw a recovery test vial after 24 h to verify viability before storing.
  5. Plate the recovery test on a fresh OP50-seeded NGM plate and confirm worms revive.
  • Planning a strain freezedown for archival storage
  • Scaling reagents for a multi-strain freeze session
  • Estimating recovery test plate requirements
  • Onboarding new lab members to the WormBook freeze protocol
  • Auditing freezer inventory against catalog records

Don't use for

  • For acute strain rescue (use a fresh chunk + plate transfer instead)
  • For non-standard cryoprotectants (DMSO, trehalose) — recipe assumes glycerol
  • For frozen embryo or sperm protocols (different chemistry)

Standard C. elegans Freezedown Protocol

The recipe (for 1 L of freezing solution)
  • 5.85 g NaCl
  • 50 mL 1 M K-phosphate buffer (pH 6)
  • 1 mL cholesterol stock (5 mg/mL in ethanol)
  • 300 mL glycerol
  • Distilled water to 1 L

Filter-sterilize and store at 4 °C for up to 6 months.

The freezedown

1. Grow worms to a healthy starved L1/L2 stage (the most freeze-tolerant) 2. Wash 3× in M9 to remove debris 3. Mix worm pellet 1:1 with freezing solution in 1.5 mL cryovials 4. Label with strain, date, freezer location, recovery status 5. Place in styrofoam rack at -80 °C for overnight slow cooling 6. Next morning, transfer to liquid N₂ Dewar for long-term storage

The recovery test (mandatory)

Always thaw 1 test vial 24 h after the freeze to verify viability before committing the batch. Plate the test vial to a fresh OP50 plate and score motility within 1 h. Lab convention: ≥30% motile worms = successful freeze.

Storage & Catalog Logistics

A C. elegans stock collection is only useful if you can find what you froze.

Catalog every freezedown

Each vial label should have: strain name (e.g., N2), genotype, freeze date, freezer + rack + box position, your initials, and recovery test status. A spreadsheet or LIMS that mirrors this info is essential — handwritten labels fade in liquid N₂.

Freezer architecture

Most labs run 1 active -80 °C box and 1 archival liquid N₂ Dewar per strain. The -80 °C box is for the next 1–2 thaws; the N₂ Dewar is for everything after that. Never store the only copy of anything at -80 °C.

Decadal recovery

A frozen stock is useless if you can't find the box 10 years later. Catalog every freeze with a unique ID, store the catalog off-site (Zotero, Notion, GitHub), and audit the freezer once a year against the catalog.

Frequently Asked Questions