Fig. S11 in A lost world in Wallacea: Description of a montane archipelagic avifauna (supplement)

Fig. S11. Cladograms comparing different phylogenetic analyses for Phyllergates leaftoilers and Phylloscopus leaf-warblers. Topologies are depicted for trees resulting from the application of (1) mitochondrial tree inference (=mtDNA), (2) a coalescent species tree method based on genomic SNPs (=species tree), and (3) concatenation methods applied to genomic SNPs and sequence-based data (=concatenation). Outgroups used (not shown) were Cettia parens for the leaftoilers and Phylloscopus poliocephalus pallescens for the leaf warblers. Branch support values <75 not shown. In the mtDNA and species tree topologies, branch support values sequentially represent mitochondrial maximum likelihood (ML) bootstrap, mitochondrial maximum parsimony (MP) bootstrap, and coalescent species tree posterior probability (multiplied by 100). In the concatenation topologies, branch support values sequentially represent bootstrap from ML analysis on the concatenated read supermatrix and bootstrap from MP analysis on concatenated SNPs. Percentage values between clades denote mitochondrial raw pairwise p-divergences for the coding gene used.