A new species of bridled darter endemic to the Etowah River system in Georgia (Percidae: Etheostomatinae: Percina)

<p>&quot;alignments&quot; folder contains concatenated ddRAD phylip alignments produced by iPyrad. `mXXp` naming scheme consistent with iPyrad parameter files.</p> <p>&quot;bridledCOB.nex&quot; contains the DNA sequence alignment for the mtDNA gene cytochrome b used in the Bayesian phylogenetic analysis.&nbsp;</p> <p>&quot;bridledCOB.nex.con.tre&quot; summarized posterior tree from Bayesian analysis of the mtDNA cytochrome b data.</p> <p>&quot;bridledNUC.nex&quot; contains the DNA sequence alignment for the 11 nuclear genes used in the Bayesian phylogenetic analysis.</p> <p>&quot;bridledNUC.nex.con.tre&quot; summarized posterior tree from Bayesian analysis of the 11 nuclear genes.</p> <p>&quot;fastqs&quot; folder contains demultiplexed fastq files containing ddRAD reads for each individual.</p> <p>&quot;iPyrad_paramFiles&quot; folder contains assembly parameters for iPyrad. `mXXp` indicates the minimum proportion of samples per locus (`min_samples_locus` iPyrad parameter). For example, `m70p` indicates that each locus is represented by at least 70% of the samples.&nbsp;</p> <p>&quot;P_freemanorum_meristic_data.csv&quot; the merstic data of Percina freemanorum.</p> <p>&quot;P_freemanorum_meristic_specimen_info.csv&quot; information associated with specimens of Percina freemanorum.</p> <p>&quot;P_kusha_meristic_data.csv&quot; the merstic data of Percina kusha.</p> <p>&quot;P_kusha_meristic_specimen_info.csv&quot; information associated with specimens of Percina kusha.</p> <p>&quot;IQTree&quot; folder contains bash script to run IQTree analyses and resulting treefiles. `mXXp` naming scheme consistent with iPyrad parameter files.</p> <p>&quot;VCFs&quot; folder contains bash script to run VCFTools filtering, outgroup file listing outgroup taxa to prune, input VCF file from iPyrad, and filtered VCF files. `Unlinked` indicates that SNPs have been pruned to include only one SNP per ddRAD locus. `mXXp` naming scheme consistent with iPyrad parameter files.<br> &nbsp;</p>