Native space mesh descriptors computed with FreeSurfer 6 for all ABIDE I subjects

<p># ABIDE I FreeSurfer 6 &#39;native space descriptors&#39; data</p> <p><br> This archive contains the following ABIDE I FreeSurfer 6 native space mesh descriptors:<br> thickness, area, volume, sulc, curv, jacobian_white.</p> <p><br> ## Credits</p> <p>This data is derived from the MRI scans of the ABIDE I dataset:</p> <p>* ABIDE I dataset: https://fcon_1000.projects.nitrc.org/indi/abide/</p> <p>Quoting from that website:</p> <p>&nbsp;&nbsp;&nbsp; &quot;The Autism Brain Imaging Data Exchange I (ABIDE I) represents the first<br> &nbsp;&nbsp;&nbsp;&nbsp; ABIDE initiative. Started as a grass roots effort, ABIDE I involved 17<br> &nbsp;&nbsp;&nbsp;&nbsp; international sites, sharing previously collected resting state functional<br> &nbsp;&nbsp;&nbsp;&nbsp; magnetic resonance imaging (R-fMRI), anatomical and phenotypic datasets<br> &nbsp;&nbsp;&nbsp;&nbsp; made available for data sharing with the broader scientific community.<br> &nbsp;&nbsp;&nbsp;&nbsp; This effort yielded 1112 dataset, including 539 from individuals with<br> &nbsp;&nbsp;&nbsp;&nbsp; ASD and 573 from typical controls (ages 7-64 years, median 14.7 years<br> &nbsp;&nbsp;&nbsp;&nbsp; across groups). This aggregate was released in August 2012. Its<br> &nbsp;&nbsp;&nbsp;&nbsp; establishment demonstrated the feasibility of aggregating resting<br> &nbsp;&nbsp;&nbsp;&nbsp; state fMRI and structural MRI data across sites; the rate of these<br> &nbsp;&nbsp;&nbsp;&nbsp; data use and resulting publications (see Manuscripts) have shown its<br> &nbsp;&nbsp;&nbsp;&nbsp; utility for capturing whole brain and regional properties of the brain<br> &nbsp;&nbsp;&nbsp;&nbsp; connectome in Autism Spectrum Disorder (ASD). In accordance with<br> &nbsp;&nbsp;&nbsp;&nbsp; HIPAA guidelines and 1000 Functional Connectomes Project / INDI<br> &nbsp;&nbsp;&nbsp;&nbsp; protocols, all datasets have been anonymized, with no protected<br> &nbsp;&nbsp;&nbsp;&nbsp; health information included.&quot;</p> <p>Citation: Di Martino, A., Yan, C. G., Li, Q., Denio, E., Castellanos, F. X., Alaerts, K., ... &amp; Milham, M. P. (2014).<br> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Molecular psychiatry, 19(6), 659-667.</p> <p>## How this data was produced</p> <p>The following steps were used to create the data:</p> <p>* We downloaded all available MRI scans for the ABIDE I subjects (1035 subjects).<br> * We pre-processed all subjects in FreeSurfer version 6 (https://freesurfer.net) by running the full recon-all pipeline for each subject.<br> &nbsp;&nbsp;&nbsp; - We did not run any quality metrics on the scans or exclude any subjects.</p> <p><br> ## Contained files</p> <p>* In order to reduce the size of this dataset, for each subject, we only included the following files:<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.thickness&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex cortical thickness for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.thickness&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex cortical thickness for the right hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.area&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex area of the white surface for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.area&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex area of the white surface for the right hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.volume&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex cortical volume for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.volume&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex cortical volume for the right hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.sulc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex sulcal depth for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.sulc&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex sulcal depth for the right hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.curv&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex mean curvature of the white surface for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.curv&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; : the per-vertex mean curvature of the white surface for the right hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/lh.jacobian_white : the per-vertex jacobian for the left hemisphere<br> &nbsp;&nbsp;&nbsp; - &lt;subject&gt;/surf/rh.jacobian_white : the per-vertex jacobian for the right hemisphere</p> <p>All files are in binary FreeSurfer curv format.</p> <p><br> ## What is NOT contained</p> <p>* The ABIDE demographics information (metadata on the subjects, like age, ...) is not included, you can get it from the ABIDE website.</p> <p>## Author and License</p> <p>Note: For the authors of the original ABIDE I dataset, see the Credits section above.</p> <p>This lgi data was created by:</p> <p>&nbsp;&nbsp;&nbsp; Dr. Tim Sch&auml;fer<br> &nbsp;&nbsp;&nbsp; Postdoc Computational Neuroimaging<br> &nbsp;&nbsp;&nbsp; Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy<br> &nbsp;&nbsp;&nbsp; University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany<br> &nbsp;&nbsp;&nbsp; http://rcmd.org/ts</p> <p>The data is published under the following license:</p> <p>Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported (CC BY-NC-SA 3.0)</p> <p>See https://creativecommons.org/licenses/by-nc-sa/3.0/legalcode.txt or the file LICENSE for the full legal code.</p> <p>See https://creativecommons.org/licenses/by-nc-sa/3.0/ for an easy explanation of what this license means for you.</p> <p>&nbsp;</p>