Supplementary data for "WebQUAST: online evaluation of genome assemblies"

<p>Supplementary data for A. Mikheenko, V. Saveliev, P. Hirsch, A. Gurevich. WebQUAST: online evaluation of genome assemblies.</p> <p><br> Reference genomes of two <em>Escherichia coli</em> K-12 substrains (MG1655 and&nbsp;W3110) and genome annotation of MG1655.</p> <p><em>De novo</em> assemblies of the&nbsp;<em>Escherichia coli</em> K-12 MG1655 short-read Illumina dataset (<a href="https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_browser&amp;acc=ERR008613&amp;display=metadata">ERR008613</a>) with ABySS, MEGAHIT, SPAdes, and Velvet.</p> <p>WebQUAST reports in three evaluation modes:&nbsp;<br> *&nbsp;Use Case 1: reference-free evaluation (<em>sample_data_no_ref</em>)<br> *&nbsp;Use Case 2: reference-based evaluation (<em>sample_data_true_ref</em>)&nbsp;<br> *&nbsp;Use Case 3: evaluation based on a close reference (<em>sample_data_close_ref</em>)</p> <p>The snapshot&nbsp;(<a href="https://github.com/ablab/quast/commit/2bd50600bcf63ee826965c10f6ca4cdc2aa046e5">commit 2bd5060</a>)&nbsp;of the QUAST command-line version used by WebQUAST for generating the reports.</p>