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zenodo36/100

Data for "International Transport costs: New Findings from modeling additive costs"

<p>Downloading the data will provide you with a .zip file.</p> <p>These data are US imports from 1974 to 2020, by partner, transport mode and product at the 5 digit level in the "Hummels" data and by partner, transport mode, district of entry, district of unlading and product at the 10 digit level for the rest of the data.</p> <p>All the data originally come from the Census Bureau "Foreign Trade" (see https://www.census.gov/foreign-trade/index.html) and belong to the public domain.</p> <p>"Hummels_JEP _data" was downloaded from David Hummels&rsquo;s website (https://www.krannert.purdue.edu/faculty/hummelsd/research/jep/data.html -- Hummels, David, "Transportation Costs and International Trade in the Second Era of Globalization", <em>Journal of Economic Perspectives</em>, Vol 21, No 3, pp 131-154. It covers 1974 to 2004.</p> <p>The other main files were bought directly from the Census Bureau ("Annual Merchandise Trade files"). They cover 1997-1999 and 2002-2020.</p> <p>Various files are included for the conversion of country codes (dist_cepii.dta, countrycodes_use.txt), product codes (HS2002_SITC2.txt) and to associate quantity units with hts codes (hts... and ..._hts_...).</p>

openodc-pddlMar 2022View details →
dryad36/100

Data for: Phylogenomic analyses reveal non-monophyly of the antbird genera Herpsilochmus and Sakesphorus (Thamnophilidae), with description of a new genus for Herpsilochmus sellowi

<p>The family Thamnophilidae is a species-rich Neotropical radiation of passerine birds. Current classification of its 235 species is mostly based on morphological similarities, but recent studies integrating comprehensive phenotypic and phylogenetic data have redefined taxonomic limits of several taxa. Here, we assess generic relationships of <i>Herpsilochmus</i>, <i>Sakesphorus</i>, <i>Thamnophilus</i>, <i>Biatas</i>, and <i>Dysithamnus</i> using DNA sequences from the mitochondrion, nuclear exons, and ultraconserved elements (UCEs), with further attention to interspecific relationships within <i>Herpsilochmus</i>. We show that <i>Herpsilochmus</i> and <i>Sakesphorus</i> are not monophyletic. We resolve <i>H. sellowi</i> as a deep-branch sister species to the monotypic genus <i>Biatas and S. cristatus </i>as sister to a clade comprising<i> Herpsilochmus </i>sensu stricto and<i> Dysithamnus</i>. These results are consistent across loci, obtained via concatenation and coalescent-based analyses, and supported by likelihood-ratio tests of the distribution of our sampled coalescent histories. The phenotypic distinctiveness of both <i>H.</i> <i>sellowi</i> and <i>Biatas</i> argues against merging them into a single genus. Because no generic name is available for <i>H.</i> <i>sellowi</i>, we describe a monotypic genus. The polyphyly of <i>Sakesphorus </i>warrants recognition of the available generic name <i>Sakesphoroides</i> for the distinctive and monotypic <i>S. cristatus</i>. Furthermore, we recover six well-supported species groups within <i>Herpsilochmus</i> sensu stricto. Within the context of the family as a whole, the ubiquity of long terminal branches representing monotypic genera points to extinction events among ancestors of these lineages. We suggest that retention of ancestral characters or random genetic drift coupled with extensive extinction could explain the high degree of morphological and ecological similarity across these taxa, but we highlight the potential role of the environment in driving adaptive phenotypic convergence. Finally, our results send a cautionary message against the blind use of phylogenies containing imputed data based on taxonomy due to the increasingly frequent mismatches between traditional taxonomic classification and molecular phylogenies.</p>

opencc-zeroMar 2022View details →
zenodo36/100

Raw Data or the article: Physiopathology and Diagnosis of Congestive Heart Failure: Consolidated Certainties and New Perspectives

<p>Volume overload and fluid congestion are a fundamental issue in the assessment and management of patients with heart failure (HF). Recent studies have found that in acute decompensated heart failure (ADHF), right and left-sided pressures generally start to increase before any notable weight changes take place preceding an admission. ADHF may be a problem of volume redistribution among different vascular compartments instead of, or in addition to, fluid shift from the interstitial compartment. Thus, identifying heterogeneity of volume overload would allow guidance of tailored therapy. A comprehensive evaluation of congestive HF needs to take into account myriad parameters, including physical examination, echocardiographic values, and biomarker serum changes. Furthermore, potentially useful diagnostic tools include bioimpedance to measure intercompartmental fluid shifts, and evaluation of ultrasound lung comets to detect extravascular lung water.</p>

opencc-by-4.0Mar 2022View details →
dryad36/100

Data from: Identification of selection signals on the X-chromosome in East Adriatic sheep: a new complementary approach

<p>Sheep are one of the most important livestock species in Croatia, found mainly in the Mediterranean coastal and mountainous regions along the East Adriatic coast, well adapted to the environment and mostly kept extensively. Our main objective was therefore to map the positive selection of the X-chromosome (18,983 SNPs that passed quality control), since nothing is known about the adaptation genes on this chromosome for any of the breeds from the Balkan cluster. Analyses were performed on a sample of eight native Croatian breeds (101 females and 100 males) representing the East Adriatic metapopulation and on 10 mouflons (five females and males), all sampled in Croatia. Three classical within-population approaches (extreme Runs of Homozygosity islands, integration Haplotype Scores, and number of Segregating Sites by Length) were applied along with our new approach called Haplotype Richness Drop (HRiD), which uses only the information contained in male haplotypes. We have also shown that phylogenetic analyses, such as the Median-joining network, can provide additional information when performed with the selection signals identified by HRiD. Our new approach identifies positive selection signals by searching for genomic regions that exhibit a sudden decline in haplotype richness. In total, we identified 14 positive selection signals, 11 using the classical approach and three using the HRiD approach, all together containing 34 annotated genes. High repeatability (86%) of results was observed, as 12 identified selection signals were also confirmed in other studies with sheep. HRiD offers an interesting possibility to be used complementary to other approaches or when only males are genotyped, which is often the case in genomic breeding value estimations. These results highlight the importance of the X-chromosome in the adaptive architecture of domestic ruminants, while our novel HRiD approach opens new possibilities for research.</p>

opencc-zeroMar 2022View details →
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Data from: Low-copy nuclear genes reveal new evidence of incongruence in relationships within Malvaceae s.l.

<p>The family Malvaceae s. l. is a clade that comprises nine subfamilies. Phylogenetic relationships among them are not completely resolved and are inconsistent among studies, probably due to low phylogenetic informativeness of conventional molecular markers. In the present study, we provide new phylogenetic information for Malvaceae s.l. derived from newly-designed group-specific nuclear markers. By mining transcriptome data from the One Thousand Plant Project (1KP) and publicly available genome information from cotton, cacao, and <i>Arabidopsis, </i>we designed a set of molecular markers of potentially single-or low-copy nuclear genes for Malvaceae s.l. Phylogenetic potential of these new loci was compared to previously applied conventional markers (i.e., plastid <i>trnK</i>-<i>matK</i> region and <i>rbcL</i> gene and the <a>nrDNA </a>ITS region) using the phylogenetic informativeness method. The results show that, when the mined nuclear regions are used in combination, it is possible to resolve relationships at different taxonomic levels within the phylogeny. However, incongruence among nuclear loci is frequent in the group, explaining the prevalence of unresolved phylogenetic relationships.</p>

opencc-zeroMar 2022View details →
dryad36/100

Data from: A new data-driven mathematical model dissociates attractiveness from sexual dimorphism of human faces

<p>Human facial attractiveness is evaluated by using multiple cues. Among others, sexual dimorphism (i.e. masculinity for male faces/femininity for female faces) is an influential factor of perceived attractiveness. Since facial attractiveness is judged by incorporating sexually dimorphic traits as well as other cues, it is theoretically possible to dissociate sexual dimorphism from facial attractiveness. This study tested this by using a data-driven mathematical modelling approach. We first analysed the correlation between perceived masculinity/femininity and attractiveness ratings for 400 computer-generated male and female faces (Experiment 1) and found positive correlations between perceived femininity and attractiveness for both male and female faces. Using these results, we manipulated a set of faces along the attractiveness dimension while controlling for sexual dimorphism by orthogonalisation with data-driven mathematical models (Experiment 2). Our results revealed that perceived attractiveness and sexual dimorphism are dissociable, suggesting that there are as yet unidentified facial cues other than sexual dimorphism that contribute to facial attractiveness. Future<span> studies can investigate the true preference of sexual dimorphism or the genuine effects of attractiveness by using well-controlled facial stimuli like those </span><span>that this study</span><span> generated. </span><span>The</span> findings will be of benefit to the further understanding of what makes a face attractive.</p>

opencc-zeroApr 2022View details →
zenodo36/100

T a b l e 1 in Citizen Science Assisted Monitoring Provides New Data Concerning the Distribution of the Bulgarian Bent-toed Gecko, Mediodactylus danilewskii (Gekkonidae, Squamata), in North-East Bulgaria

T a b l e 1. Coordinates of the newly recorded specimens of M. danilewskii in North East Bulgaria

opencc-by-4.0Dec 2021View details →
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Fig. 2 in Citizen Science Assisted Monitoring Provides New Data Concerning the Distribution of the Bulgarian Bent-toed Gecko, Mediodactylus danilewskii (Gekkonidae, Squamata), in North-East Bulgaria

Fig. 2. Schematic map of the confirmed and new sites of

opencc-by-4.0Dec 2021View details →
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Data From: A New Distinctive Species of Schizanthus (Solanaceae) and the Reinstatement of Schizanthus fallax

<p>A new <i>Schizanthus</i> species from northern Chile is described and illustrated. <b><i>Schizanthus nutantiflorus</i></b> was discovered based on recent collections made during unusual rain events in the Atacama Desert in 2015. The new species is distinguished morphologically from other <i>Schizanthus </i>species from northern Chile by its short corolla tube, with a distinct upper lip arrangement and colour, having the longest lower lip, and downward-facing flowers. Additionally, the reinstatement of <i>Schizanthus fallax</i> is proposed. By using both nDNA and cpDNA, phylogenetic relationships among all species of <i>Schizanthus</i> were investigated. Molecular and field observations, as well as an exhaustive morphological revision of fresh material and herbarium specimens, supports the segregation of <i>Schizanthus</i> with short corolla tubes from northern Chile into three species. We propose that, in order to fully understand both the taxonomy and evolution of <i>Schizanthus</i>, an integrative framework encompassing molecular, ecological and morphological data should be carried out. Information on distribution, habitat, conservation status, besides taxonomic notes and illustrations are provided. In addition, an updated key for the species of <i>Schizanthus</i> from northern Chile is given.</p>

opencc-zeroApr 2022View details →
dryad36/100

Data from: Puercosuchus traverorum n. gen. and sp.: a new malerisaurine azendohsaurid (Archosauromorpha: Allokotosauria) from two monodominant bonebeds in the Chinle Formation (Upper Triassic, Norian) of Arizona

<p><span><span>Non-archosaur archosauromorphs are a paraphyletic group of diapsid reptiles that are important members of global Middle Triassic and Late Triassic continental ecosystems. Included in this group are the azendohsaurids, a clade of allokotosaurians (kuehneosaurids and Azendohsauridae + Trilophosauridae) that retain the plesiomorphic archosauromorph postcranial body plan but have evolved disparate cranial features that converge on later dinosaurian anatomy, including sauropodomorph-like marginal dentition and ceratopsian-like postorbital horns. Here we describe a new malerisaurine azendohsaurid from two monodominant bonebeds in the Blue Mesa Member, Chinle Formation (Late Triassic, ~218</span><span>–</span><span>220 Ma); the first occurs at Petrified Forest National Park and preserves a minimum of eight individuals of varying sizes, and the second occurs near St. Johns, Arizona. <em>Puercosuchus traverorum</em> n. gen. and sp. is a carnivorous malerisaurine that is closely related to <em>Malerisaurus robinsonae</em> from the Maleri Formation of India and to <em>Malerisaurus langstoni</em> from the Dockum Group of western Texas. Dentigerous elements from <em>Puercosuchus traverorum</em> confirm that some Late Triassic tooth morphotypes thought to represent early dinosaurs cannot be differentiated from, and likely pertain to, <em>Puercosuchus</em>-like malerisaurine taxa. These bonebeds from northern Arizona support the hypothesis that non-archosauriform archosauromorphs were locally diverse near the middle of the Norian and experienced an extinction event prior to the end-Triassic mass extinction coincidental with the Adamanian-Revueltian boundary recognized at Petrified Forest National Park. The relatively late age of this early-diverging taxon (Norian) suggests that the diversity of azendohsaurids is underrepresented in the Middle Triassic and Late Triassic fossil records around the world.</span></span></p>

opencc-zeroApr 2022View details →
zenodo36/100

Gravity data used in the paper "Imaging the volcanic structures beneath Gran Canaria Island using new gravity data"

<p>This file includes the values of gravity and complete Bouguer gravity anomaly calculated for the land gravity stations in Gran Canaria Island (Canary Islands, Spain). Each station has the corresponding UTM coordinates (Zone 28N) in metres (Datum WGS84). &nbsp;</p> <p>This gravity data set has been used in the paper:</p> <p>Montesinos, F. G.,&nbsp;Arnoso, J.,&nbsp;G&oacute;mez-Ortiz, D.,&nbsp;Benavent, M.,&nbsp;Blanco-Montenegro, I.,&nbsp;V&eacute;lez, E., et al. (2022).&nbsp;Imaging the volcanic structures beneath Gran Canaria Island using new gravity data.&nbsp;<em>Journal of Geophysical Research: Solid Earth</em>,&nbsp;127, e2022JB024863.&nbsp;<a href="https://doi.org/10.1029/2022JB024863">https://doi.org/10.1029/2022JB024863</a></p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2022View details →
dryad36/100

Molecular data and analysis specifications for a study on Atriophallophorus parasites from New Zealand

<p>This dataset accompanies the manuscript "Phylogeography and Cryptic Species Structure of a Locally Adapted Parasite in New Zealand". In our study we have shown that multiple species of the trematode parasite from the <em>Atriophallophorus</em> genus co-exist within the same lakes. When focusing on the most common of these species, <em>Atriophallophorus winterbourni</em>, we found that the Southern Alps and Pleistocene glaciation are a likely explanation for its phylogeographic patterns.</p> <p>This dataset consists of three parts: (I) An Excel file containing SNP data, all sample information and the output of phylogeographic analysis with MASCOT<sup>1</sup>, (II) all sequence alignments, including NADH5, 28S, ITS2 and COI, as they are used for the manuscript and (III) input files for the various analyses as they were prepared for the analysis.</p> <p><sup>1</sup>MASCOT: marginal approximation of the structured coalescent as implemented in BEAST2</p>

opencc-zeroJun 2022View details →
zenodo36/100

Data set from "Absolute Treatment Effects for the Primary Outcome and All-cause Mortality in the Cardiovascular Outcome Trials of New Antidiabetic Drugs – A Meta-Analysis of Digitalized Individual Patient Data"

<p>This data set contains the complete digitalized individual patient data that are used in the manuscript &quot;Absolute Treatment Effects for the Primary Outcome and All-cause Mortality in the Cardiovascular Outcome Trials of New Antidiabetic Drugs &ndash; A Meta-Analysis of Digitalized Individual Patient Data&quot;, which is accepted from &quot;Acta Diabetologica&quot;.<br> The data file is in CSV format and contains the five variables &quot;OutcomeType&quot; (with values &quot;AllcauseMortality&quot; or &quot;PrimaryOutcome&quot;), &quot;Study&quot; (denoting the respective cardiovascular outcome trial), &quot;Treatment&quot; (denoting the respective study treatment or placebo), &quot;Event&quot; (denoting if the respective has been observed (Event=1) or not (Event=0)), and &quot;SurvivalTimeMonths&quot; (denoting the respective time to the event or censoring in months).</p>

opencc-by-4.0Jun 2022View details →
zenodo36/100

Data in support of Using target sequence capture to improve the phylogenetic resolution of a rapid radiation in New Zealand Veronica

<p>Includes alignments and trees for the analysis found in Thomas et al. 2021, Using target sequence capture to improve the phylogenetic resolution of a rapid radiation in New Zealand Veronica;&nbsp;American Journal of Botany, Special Issue: Exploring Angiosperms353: a Universal Toolkit for Flowering Plant Phylogenomics. Alignments comprise subsets of Angiosperms353 genes given each filtering scheme (full, intersection, sortadate_BP, sortadate_TL) and gene type/subset (exons, introns, supercontigs), and for markers downloaded from GenBank, as explained in the Methods section of Thomas et al. 2021. Trees were included for each of these alignments from IQtree and Astral; SVDquartets tree was only estimated for the full set of supercontigs. Gene trees were generated with IQtree. Tree files are named differently than the final manuscript; refer to the number of genes specified in Fig 1 of Thomas et al, 2021 and specified in each filename to identify filtering scheme.&nbsp;Raw sequence reads are available on the Sequence Read Archive at <a href="http://www.ncbi.nlm.nih.gov/bioproject/715342">http://www.ncbi.nlm.nih.gov/bioproject/715342</a>.</p>

opencc-by-4.0Jun 2022View details →
zenodo36/100

Integrating ZooMS and zooarchaeology: new data from the Uluzzian levels of Uluzzo C Rock Shelter, Roccia San Sebastiano cave and Riparo del Broion

<p>ZooMS spectra of Riparo del Broion, Roccia San Sebastiano cave and Uluzzo C Rock Shelter.</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

New data for Dai, Y., Yu, J., Ren, H. et al. Deglacial Subantarctic CO2 outgassing driven by a weakened solubility pump. Nat Commun 13, 5193 (2022)

<p>This repository contains new data reported in the article entitled &quot;Deglacial Subantarctic CO<sub>2</sub> outgassing driven by a weakened solubility pump&quot; in Nature Communications by Dai et al.</p> <p>File d11B MgCa.txt contains boron isotope and Mg/Ca data in planktic foraminifera&nbsp;<em>G. bulloides</em> at site MD97-2106.</p> <p>File d15N.txt contains nitrogen isotope data in planktic foraminifera&nbsp;<em>G. bulloides</em> at site MD97-2106.</p>

opencc-by-4.0Aug 2022View details →
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Data for: New insights into Xenopus sex chromosome genomics from the Marsabit clawed frog, X. borealis

<p><span>In many groups, sex chromosomes change frequently but the drivers of their rapid evolution are varied and often poorly characterized. With an aim of further understanding sex chromosome turnover, we investigated the polymorphic sex chromosomes of the Marsabit clawed frog, <em>Xenopus borealis,</em> using genomic data and a new chromosome-scale genome assembly. We confirmed previous findings that 54.1 Mb of chromosome 8L is sex-linked in animals from east Kenya and a lab strain, but most (or all) of this region is not sex-linked in natural populations from west Kenya. Previous work suggests possible degeneration of the Z chromosomes in the east population because many sex-linked transcripts of this female heterogametic population have female-biased expression, and we therefore expected this chromosome to not be present in the west population. In contrast, our simulations support a model where the sex-linked portion of the Z chromosome from the east acquired autosomal segregation in the west, and where the W chromosome from the east was lost in the west. These recent changes are consistent with the hot potato model, wherein sex chromosome turnover is favoured by natural selection if it purges a (minimally) degenerate sex-specific sex chromosome, but counterintuitively suggest natural selection failed to purge a Z chromosome that has signs of more advanced and possibly more ancient regulatory degeneration. These findings highlight complex evolutionary dynamics of young, rapidly evolving <em>Xenopus</em> sex chromosomes, and set the stage for mechanistic work aimed at pinpointing additional sex-determining genes in this group.</span></p>

opencc-zeroAug 2022View details →
zenodo36/100

Original data for publications: Synthesis, Characterization, and Crystal Structures of Two New Manganese Aceto EMIM Ionic Compounds with Chains of Mn2+ Ions Coordinated Exclusively by Acetate, and: Fe4(OAc)10[EMIM]2: Novel Iron-Based Acetate EMIM Ionic Compound

<p>Origianl data for publications (Part of University of Geneva only):</p> <p>Synthesis, Characterization, and Crystal Structures of Two New Manganese Aceto EMIM Ionic Compounds with Chains of Mn2+ Ions Coordinated Exclusively by Acetate<br> Przemyslaw Dera, Edward Bruffey III, Gregory J. Finkelstein, Colleen Kelly, Angelina Gigante, Hans Hagemann, and Godwin Severa<br> ACS Omega&nbsp; 2020, 5, 25, 15592-15600</p> <p>Fe4(OAc)10[EMIM]2: Novel Iron-Based Acetate EMIM Ionic Compound<br> Godwin Severa, Edward Bruffey, Phuong Q. H. Nguyen, Angelina Gigante, Noemi Leick, Colleen Kelly, Gregory J. Finkelstein, Hans Hagemann, Thomas Gennett, Richard E. Rocheleau, and Przemyslaw Dera,<br> ACS Omega 2021, 6, 31907-31918.</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Aug 2022View details →
zenodo36/100

Low-fold seismic reflection data acquired across the Northern Hikurangi subduction margin and incoming Hikurangi Plateau, New Zealand

<p>Two-dimensional seismic reflection data were acquired on two surveys of the Northern Hikurangi subduction margin, New Zealand in 2011 and 2015. The survey data were collected to support research of tectonic structure, slow slip processes, stratigraphic architecture, and thermal state of the subduction margin and incoming plate, as well as to support ocean-floor drilling associated with IODP Expeditions 372 and 375. The surveys include (1) R/V <em>Tangaroa</em> NIWA voyage TAN1114 undertaken in 2011 by the National Institute of Water and Atmospheric Research (NIWA) and GNS Science, as part of the <em>OS2020 Northern Hikurangi Margin Geohazards</em> survey; and (2) R/V <em>Rodger Revelle</em> cruise RR1508 undertaken in 2015 by Oregon State University as part of the <em>Subduction Thrust Investigation of New Zealand using Geothermics and Seismics (STINGS)</em> project (see Figure 1). TAN1114 voyage was funded by the New Zealand Government Oceans 2020 Programme, and core research programme funding by NIWA and GNS Science. Cruise RR1508 was funded by NSF grants OCE-1355878 and OCE-1355870.</p> <p>&nbsp;</p> <p><strong>R/V <em>Tangaroa</em> TAN1114 Seismic Data</strong></p> <p><strong>Data Acquisition:</strong> &nbsp;The seismic system used on R/V <em>Tangaroa</em> during the 2011 National Institute of Water and Atmospheric Research (NIWA) survey TAN1114 included a source comprising two Sodera 45/105 GI guns operated in true GI mode. The guns were deployed 35 m behind the vessel RV <em>Tangaroa</em> at 5 m water depth. Lines TAN1114-01 to -13, and part of line 14 were acquired with a shot interval of 10.8 seconds (~25 m sailing at 4.5 knots), providing a nominal coverage of 12-fold data. Part of line TAN1114-14 and lines 15-23 were acquired with a shot interval of 21.6 seconds (~50 m sailing at 4.5 knots), providing a nominal 6-fold coverage. Data were recorded on a Geometrics GeoEel 48-channel seismic streamer with 6 X 100 m active sections, and a group interval of 12.5 m. The streamer was deployed at a depth of 7.5 m, apart from line TAN1114-01 where it was towed at 5 m depth. Depth control was maintained with a CSMX depth control system including three DigiCourse 5011 compass birds. The record length was 8 s and the sample rate 2 ms. Differential GPS was used for positioning. Table 1 summarises TAN1114 recording parameters and Table 2 lists TAN1114 lines acquired and processed. TAN1114 line coordinates are detailed in Table 3.</p> <p><strong>Data Processing:</strong> &nbsp;A total of 29 seismic lines were processed providing 1350 km of multichannel seismic reflection data. The lines were processed to post-stack time-migrated SEGY sections, using GNS Science GLOBE CLARITAS. With allowance for overlap of line segments the data were grouped into 51167 shot-point locations. Raw data were written to disk as IBM standard SEG-Y files. IBM Claritas Extended SEG-Y data were written to disk after geometry was added, after stack, and after migration. Shots were CDP sorted from disk during the stacking process to avoid creating large and unnecessary separate CDP sorted files.&nbsp;</p> <p>Post-stack migration (finite difference migration) has been applied to the stacked sections to produce a dip-true image, this results in clearer resolution of structural features such as faults and folds, and of detailed sedimentary features such as on-lapping and truncated reflections. Sea-floor multiple reflections disturb structural imaging especially in water depths less than 500 m.&nbsp; All seismic data are written to disk as processed sections in SEG-Y format. Line TAN1114-A is a composite splice including parts of lines TAN1114-4A, -6A and 7A.&nbsp;Details of the TAN1114 processing parameters are given in Table 4 and SEG-Y trace headers in Table 5.</p> <p>&nbsp;</p> <p><strong>R/V <em>Rodger Revelle</em> RR1508 Seismic Data</strong></p> <p><strong>Data Acquisition:</strong> The 2015 R/V <em>Rodger Revelle</em> survey RR1508 used a seismic system operated by Scripps Institute of Oceanography. Of two sub-regions surveyed during this cruise, only data from the northern Hikurangi margin are presented here. The seismic system used was similar to that on <em>Tangaroa</em> TAN1114, including a source comprising two Sodera 45/105 GI guns operated in true GI mode. The guns were deployed at a depth of 3.5 m and the shot spacing was 25 m. &nbsp;Data were recorded on a Geometrics GeoEel 48-channel seismic streamer with 6 X 100 m active sections, and a group interval of 12.5 m. The streamer was deployed at a depth of 3.5 m. During acquisition of the HKS01 lines, only the nearest 40 data channels were recorded. The record length was 8 s and the sample rate 1 ms. Differential GPS was used for positioning. Table 6 summarises RR1508 recording parameters and Table 7 lists RR1508 lines acquired and processed.</p> <p><strong>Data Processing: </strong>A total of 13 HKS01 seismic lines were processed to post-stack time-migrated SEGY sections, using GNS Science GLOBE CLARITAS. Data processing included application of geometry, sorting, trace editing, normal moveout correction, stack, filtering and finite difference migration. All seismic data are written to disk as processed sections in SEG-Y format. Details of the RR1508 processing parameters are given in Table 8 and SEG-Y trace headers in Table 9.</p> <p>&nbsp;</p> <p><strong>List of files</strong></p> <p>Figure 1. TAN1114 and RR1508 seismic line locations on the northern Hikurangi margin.</p> <p>Table 1. Summary of TAN1114 recording parameters.</p> <p>Table 2. Summary of TAN1114 lines acquired and processed.</p> <p>Table 3. Summary of TAN1114 line coordinates.</p> <p>Table 4.&nbsp; Summary of TAN1114 seismic processing sequence.</p> <p>Table 5.&nbsp; Summary of TAN1114 SEG-Y trace headers.</p> <p>Table 6. Summary of RR1508 recording parameters.</p> <p>Table 7. Summary of RR1508 lines acquired and processed.</p> <p>Table 8.&nbsp; Summary of RR1508 seismic processing sequence.</p> <p>Table 9.&nbsp; Summary of RR1508 SEG-Y trace headers.</p> <p>&nbsp;</p> <p>Processed SEGY seismic data</p> <p>TAN1114-01.sgy</p> <p>TAN1114-02.sgy</p> <p>TAN1114-03.sgy</p> <p>TAN1114-04.sgy</p> <p>TAN1114-04A.sgy</p> <p>TAN1114-05.sgy</p> <p>TAN1114-06.sgy</p> <p>TAN1114-06A.sgy</p> <p>TAN1114-07.sgy</p> <p>TAN1114-07A.sgy</p> <p>TAN1114-08.sgy</p> <p>TAN1114-09.sgy</p> <p>TAN1114-10.sgy</p> <p>TAN1114-10B.sgy</p> <p>TAN1114-11.sgy</p> <p>TAN1114-12.sgy</p> <p>TAN1114-12T.sgy</p> <p>TAN1114-13.sgy</p> <p>TAN1114-14.sgy</p> <p>TAN1114-15.sgy</p> <p>TAN1114-16.sgy</p> <p>TAN1114-17.sgy</p> <p>TAN1114-18.sgy</p> <p>TAN1114-19.sgy</p> <p>TAN1114-20.sgy</p> <p>TAN1114-21.sgy</p> <p>TAN1114-22.sgy</p> <p>TAN1114-23.sgy</p> <p>TAN1114-A.sgy</p> <p>RR1508-HKS01_01.sgy</p> <p>RR1508-HKS01_02.sgy</p> <p>RR1508-HKS01_02A.sgy</p> <p>RR1508-HKS01_03.sgy</p> <p>RR1508-HKS01_04.sgy</p> <p>RR1508-HKS01_05.sgy</p> <p>RR1508-HKS01_05A.sgy</p> <p>RR1508-HKS01_06.sgy</p> <p>RR1508-HKS01_07.sgy</p> <p>RR1508-HKS01_08.sgy</p> <p>RR1508-HKS01_09.sgy</p> <p>RR1508-HKS01_09A.sgy</p> <p>RR1508-HKS01_10.sgy</p>

opencc-by-4.0Jun 2022View details →
dryad36/100

Phylogenetic data for: High diversity of new and known Phytophthora species from phylogenetic Clade 10 in natural ecosystems of Asia, Europe and the Americas

<p class="MsoNormal"><span>During extensive surveys of <em>Phytophthora</em> diversity, 14 new species were detected in natural ecosystems in Chile, Louisiana, Sweden, Ukraine, Vietnam and Indonesia. Multigene phylogeny based on the nuclear LSU, <em>rpl10</em>, ITS, <em>ßtub</em>, <em>enl</em>, <em>hsp90</em>, <em>tef-1α</em>, </span><em><span>ras-ypt1</span></em><span> and <em>tigA </em>and the mitochondrial <em>cox1</em>, <em>nadh1</em> and <em>rps10</em> gene sequences demonstrated that they belong to phylogenetic Clade 10 which is structured into three subclades. Subclades 10a and 10b comprise soil- and waterborne species with nonpapillate sporangia and variable breeding systems, including the known <em>P. afrocarpa</em>, <em>P. gallica</em> and <em>P. intercalaris</em> and the new </span><em><span>P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica</span></em><span>, <em>P. tenuimura, P. tonkinensis</em> and<em> P. ukrainensis</em>. In contrast, </span><span>all species in Subclade 10c are airborne with papillate sporangia and homothallic breeding system, including the known <em>P. boehmeriae</em>, <em>P. kernoviae</em> and <em>P. morindae</em> and the new </span><em><span>P. celebensis</span></em><span>, <em>P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis </em>and<em> P. pseudokernoviae</em>.<em> </em></span><span>All new species differed from each other and from related species by a unique combination of morphological characters, the breeding system, cardinal temperatures and growth rates.</span><span> The biogeography and evolutionary history of Clade 10 are discussed and the hypothesis put forward that the extant subclades originate from early divergences of pre-Gondwanan ancestors (&gt;175 Mya) into water-/soilborne and airborne lineages which during their global spread experienced multiple allopatric and sympatric radiations.</span></p>

opencc-zeroAug 2022View details →

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