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30,817 results for “type”
Figure 1 in An illustrated catalog of Disteniidae (Coleoptera: Chrysomeloidea) type specimens deposited at the Museu de Zoologia da Universidade de São Paulo
Figure 1. Disteniidae type specimens. (A-C) Abauba iani Santos-Silva & Tavakilian, 2009, female paratype (A) Dorsal view (B) Ventral view (C) Original labels. (D-F) Abauba mediorufovittata Santos-Silva & Tavakilian, 2009, male paratype (D) Dorsal view (E) Ventral view (F) Original labels (G-I) Abauba napoensis Santos-Silva & Tavakilian, 2009, male paratype (G) Dorsal view (H) Ventral view (I) Original labels. Scale bar: 2 mm.
Figure 19 in An illustrated catalog of Disteniidae (Coleoptera: Chrysomeloidea) type specimens deposited at the Museu de Zoologia da Universidade de São Paulo
Figure 19. Disteniidae type specimens. (A-C) Novantinoe birai Santos-Silva & Hovore, 2007, male holotype (A) Dorsal view (B) Ventral view (C) Original labels. (D-F) Novantinoe chemsaki Santos-Silva & Hovore, 2007, male holotype (D) Dorsal view (E) Ventral view (F) Original labels. (G-I) Novantinoe cotopaxiana Santos-Silva & Hovore, 2007, male paratype (G) Dorsal view (H) Ventral view (I) Original labels. Scale bar: 1 mm.
Figure 22 in An illustrated catalog of Disteniidae (Coleoptera: Chrysomeloidea) type specimens deposited at the Museu de Zoologia da Universidade de São Paulo
Figure 22. Disteniidae type specimens. (A-C) Novantinoe payettei Santos-Silva & Le Tirant, 2016, male holotype (A) Dorsal view (B) Ventral view (C) Original labels. (D-F) Novantinoe rileyi Santos-Silva & Hovore, 2007, female holotype (D) Dorsal view (E) Ventral view (F) Original labels. (G-H) Novantinoe solisi Santos-Silva & Hovore, 2007, male holotype (D) Dorsal view (E) Ventral view (F) Original labels. Scale bar: 1 mm.
Diel greenhouse gas emissions demonstrate a strong response to vegetation patch types in a freshwater wetland
<p>Data supporting submitted research paper. "All_flux_variables.csv" includes all plot data and is organized by the date/time of sample, campaign number, and sample location in rows and data collected as headers in the columns. "Flux_tower_data.csv" are meterological variables include in data analysis collected by a flux tower on sight. All other files are time series data for water pH (n = 2), water temperature (n = 3-5). Refer to the "metadata.csv" for units and descriptions of data in files. </p>
Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system
<div> <div> <div> <div> <div> <p>This dataset accompanies the publication "Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system" (Otto <em>et al., </em>2024). It encompasses the raw data for all graphs, <em>p</em> values, and growth rates associated with the study.</p> </div> </div> </div> </div> </div>
N-type molecular doping of a semicrystalline conjugated polymer through cation exchange
<p>N-type molecular doping of a semicrystalline conjugated polymer through cation exchange was conducted. UV-Vis absorption, photoelectron yield, and x-ray diffraction measurements were conducted to evaluate the resulting doping levels and stability.</p>
Figure 4. Regression between senescence leaf N in Foliar resorption of nitrogen and phosphorus in Alcea apterocarpa (Malvaceae) in different habitats types
Figure 4. Regression between senescence leaf N/P ratio and RE and RP of A. apterocarpa.
Figure 3. Regression between green leaf N in Foliar resorption of nitrogen and phosphorus in Alcea apterocarpa (Malvaceae) in different habitats types
Figure 3. Regression between green leaf N/P ratio and RE and RP of A. apterocarpa.
Data from: Major group-B enterovirus populations deleted in the noncoding 5' region of genomic RNA modulate activation of the type I interferon pathway in cardiomyocytes and induce myocarditis
<p>Major 5'-terminally deleted (5'TD) RNA forms of group-B coxsackievirus (CVB-5'TD) has been associated with myocarditis in both mice and humans. Although it is known that interferon-β (IFN-β) signaling is critical for an efficient innate immune response against CVB-induced myocarditis, the link between CVB-5'TD RNA forms and type I IFN signaling in cardiomyocytes remains to be explored. In a mouse model of CVB3/28-induced myocarditis, major early-emerging forms of CVB-5'TD RNA have been characterized as replicative viral populations that impair IFN-β production in the heart. Synthetic CVB3/28 RNA forms mimicking each of these major 5'TD virus populations were transfected in mice and have been shown to modulate innate immune responses in the heart and to induce myocarditis in mice. Remarkably, transfection of synthetic viral RNA with deletions in the secondary structures of the 5'-terminal CVB3 RNA domain I, modifying stem-loops "b", "c" or "d", were found to impair IFN-β production in human cardiomyocytes. In addition, the activation of innate immune response by Poly(I:C), was found to restore IFN-β production and to reduce the burden of CVB-5'TD RNA-forms in cardiac tissues, thereby reducing the mortality rate of infected mice. Overall, our results indicate that major early-emerging CVB3 populations deleted in the domain I of genomic RNA, in the 5' noncoding region, modulate the activation of the type I IFN pathway in cardiomyocytes and induce myocarditis in mice. These findings shed new light on the role of replicative CVB-5'TD RNA forms as key pathophysiological factors in CVB-induced human myocarditis.</p>
Figure 1 in The types of Liptena augusta Suffert, 1904 and Liptena subundularis (Staudinger, 1892) (Papilionoidea: Lycaenidae: Poritiinae)
Figure 1 – Male lectotype of Liptena augusta with labels.
Effect of exposition to levodopa/carbidopa (LA/CA) on Machado-Joseph disease/spinocerebellar ataxia type 3 (MJD/SCA3) evolution.
<p>Progress of SARA scores (A) observed in individuals with MJD/SCA3 and (B) predicted by the Linear Mixed Effects model for (top) controls and (bottom) cases of exposition to LA/CA. (B) 95% confidence intervals for 6-year predictions computed assuming a random MJD/SCA3 patient, 58 years of age, and expanded allele length 70. More details in 'Raposo M, Sárkány Z, Damásio J, Consortium CS, Lima M, Macedo-Ribeiro S, et al. Effect of levodopa/carbidopa on the progression of Machado-Joseph disease /spinocerebellar ataxia type 3 (MJD/SCA3). MedRxiv; 2024, doi.org/10.1101/2024.11.28.24318145'.</p>
Supplementary data for manuscript "Genetic risk converges on regulatory networks mediating early type 2 diabetes"
<p>Supplementary data for manuscript "Genetic risk converges on regulatory networks mediating early type 2 diabetes" Nature 624, 621–629 (2023). <a href="https://doi.org/10.1038/s41586-023-06693-2">https://doi.org/10.1038/s41586-023-06693-2</a></p> <p>Brief description of the included files is given below. Please visit the manuscript website for latest updates: <a href="http://theparkerlab.org/manuscripts/2021_islet-rfx6/">http://theparkerlab.org/manuscripts/2021_islet-rfx6/</a></p>
Global Coastal Type (GCT) Dataset
<p><span>The Global Coastal Type (GCT) version 1.0 dataset shows the 7-part global coastal type classification used in the study to analyze storm surge inundation risk by coastal environment.</span></p>
Metadata matrix: publication type (papers) by authors, from webQDA.
<p>Part of the thesis of Sonia Verdugo Castro (USAL, Spain). <br> Title of the article: "The gender gap in STEM higher education studies: visualisation of literature".<br> Authors of the publication: Sonia Verdugo-Castro, Mª Cruz Sánchez-Gómez, Alicia García-Holgado, Francisco J. García-Peñalvo</p>
Metadata matrix: publication type by authors, from webQDA.
<p>Part of the thesis of Sonia Verdugo Castro (USAL, Spain). <br> Title of the article: "The gender gap in STEM higher education studies: visualisation of literature".<br> Authors of the publication: Sonia Verdugo-Castro, Mª Cruz Sánchez-Gómez, Alicia García-Holgado, Francisco J. García-Peñalvo</p>
Mapping breakpoint types: an exploratory study
<p>This repository contains the breakpoint types study dataset.</p> <p><strong>Abstract</strong></p> <p>Debugging is a relevant task for finding bugs during software development, maintenance, and evolution. During debugging, developers use modern IDE debuggers to analyze variables, step execution, and set breakpoints. Observing IDE debuggers, we find several breakpoint types. However, what are the breakpoint types? The goal of our study is to map the breakpoint types among IDEs and academic literature. Thus, we mapped the gray literature on the documentation of the nine main IDEs used by developers according to the three public rankings. In addition, we performed a systematic mapping of academic literature over 68 articles describing breakpoint types. Finally, we analyzed the developers understanding of the main breakpoint types through a questionnaire. We present three main contributions: (1) the mapping of breakpoint types (IDEs and literature), (2) compiled definitions of breakpoint types, (3) a breakpoint type taxonomy. Our contributions provide the first step to organize breakpoint IDE taxonomy and lexicon, and support further debugging research.</p>
Anti-TNF therapy for inflammatory bowel disease in patients with neurodegenerative Niemann-Pick disease Type C
<p>Abstract:</p> <p>Background: Blockade of tumour necrosis factor (anti-TNF) is effective in patients with Crohn’s Disease but has been associated with infection risk and neurological complications such as demyelination. Niemann-Pick disease Type C1 (NPC1) is a lysosomal storage disorder presenting in childhood with neurological deterioration, liver damage and respiratory infections. Some NPC1 patients develop severe Crohn’s disease. Our objective was to investigate the safety and effectiveness of anti-TNF in NPC1 patients with Crohn’s disease.</p> <p>Methods: Retrospective data on phenotype and therapy response were collected from patients with genetically confirmed NPC1 defects and intestinal inflammation. We investigated TNF secretion in peripheral blood mononuclear cells treated with NPC1 inhibitor in response to bacterial stimuli.</p> <p>Results: NPC1 inhibitor treated PBMCs show significantly increased TNF production after lipopolysaccharide or bacterial challenge providing a rationale for anti-TNF therapy. We identified 5 NPC1 patients with CD-like intestinal inflammation treated using anti-TNF therapy (mean age of onset 8.6 years, mean treatment length 27.2 months, overall treatment period 11.3 patient years). Anti-TNF therapy was associated with reduced gastrointestinal symptoms with no apparent adverse neurological events. Therapy improved intestinal inflammation in 4 patients.</p> <p>Conclusion: Anti-TNF therapy appears safe in patients with NPC1 and is an effective treatment strategy for the management of intestinal inflammation in these patients.</p>
Live-cell fluorescence microscopy data for: Structural Dynamics of the Functional Nonameric Type III Translocase Export Gate
<p><strong>yuan_t3ss_raw_data.zip:</strong></p> <p>Microscopy data types:<br> <strong>- </strong>Brightfield images<br> - Fluorescence images (514 nm excitation)</p> <p>Microscope:<br> Olympus IX-83 with 1.49NA oil-immersion objective (Olympus UAPON 100x)<br> ET442/514/561 Laser triple band set filtercube (69904, Chroma)</p> <p>Camera:<br> Hamamatsu C9100-13 EM-CCD Camera<br> 80 nm pixel size</p> <p><strong>yuan_t3ss_cell_objects.zip:</strong></p> <p>EPEC and C41 ColiCoords cell objects derived from the raw data. The set contains a total of 24979 individual cells (brightfield, binary, fluorescence and localization datasets for each cell) with corresponding coordinate systems.</p> <p>Code to generate these cell objects from the raw data: https://github.com/Jhsmit/T3SS-paper</p> <p>The data format is .hdf5 and can be read with any HDF5 reader or directly with ColiCoords: https://github.com/Jhsmit/ColiCoords</p> <p><strong>Contact:</strong><br> Jochem Smit</p>
GitTables benchmark - column type detection
<p><strong>Note: the download page of the entire GitTables corpus is here: <a href="https://zenodo.org/record/4943312">https://zenodo.org/record/4943312</a>.</strong></p> <p>This dataset represents a <strong>small subset</strong> of tables from <a href="https://gittables.github.io">GitTables</a> curated for benchmarking column type detection methods. This benchmark evaluates systems that match table columns to semantic types from the <a href="http://wikidata.dbpedia.org/services-resources/ontology">DBpedia</a> and <a href="https://schema.org/docs/schemas.html">Schema.org</a> ontologies. It is featured in the <a href="https://www.cs.ox.ac.uk/isg/challenges/sem-tab/2021/index.html">SemTab 2021 challenge</a> (CTA task).</p> <p>This dataset consists of the following files:</p> <ul> <li>“tables.zip”: directory with a sample of 1101 tables from GitTables. Filenames correspond to table IDs, the first column (without column name) corresponds to row indices, column names are replaced with "col_0", "col_1", etc. which match to the targets and labels (semantic types).</li> <li>“<ontology>_targets.csv”: target columns per table ID, 1 file per ontology (DBpedia or Schema.org): columns are “table_id” (ignore the "_<ontology>" suffix) and “target_column” (i.e. the column that should be annotated).</li> <li>“<ontology>_gt.csv”: ground truth column annotations per table ID, 1 file per ontology: columns are “table_id” (ignore the _<ontology> suffix), “target_column”, “annotation_id”, “annotation_label”.</li> <li>“<ontology>_labels.csv”: unique labels present in the annotated tables, 1 file per ontology: columns are “annotation_id” and “annotation_label”.</li> </ul> <p>The labels (semantic types) from each ontology come from:</p> <ul> <li>DBpedia: only properties from the <a href="http://wikidata.dbpedia.org/services-resources/ontology">DBpedia ontology</a>.</li> <li>Schema.org: properties and types from <a href="https://schema.org/docs/schemas.html">Schema.org</a>.</li> </ul> <p>For the entire GitTables corpus, please refer to <a href="https://zenodo.org/record/4943312#.YZQUWr3ML6Y.">this dataset</a>. Visit <a href="https://gittables.github.io">https://gittables.github.io</a> for more background and contact details.</p>
Datasets for "effects of augmentation type"
<p>Datasets for ablation study of "effects of augmentation type"</p> <p>"train_no_decl.jsonl", "train_no_api.jsonl" and "train_no_control.jsonl" represent equal-sized datasets that do not contain transformations of declaration, API and control structure, respectively. </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.