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Figure 4 in Chewing lice (Phthiraptera: Amblycera, Ischnocera) species found on birds in Turkey, with new records and a new host association
Figure 4. Cuclotogaster heterographus, male, original.
Figure 3 in Chewing lice (Phthiraptera: Amblycera, Ischnocera) species found on birds in Turkey, with new records and a new host association
Figure 3. Cuclotogaster heterographus, female, original.
Figure 5 in Chewing lice (Phthiraptera: Amblycera, Ischnocera) species found on birds in Turkey, with new records and a new host association
Figure 5. Cuclotogaster heterographus, male genitalia, original.
Intra-host single-genome sequences of SARS-CoV-2 spike from people without HIV and people living with HIV
<p>Supporting data and code for the study "Rapid Intra-host Diversification and Evolution of SARS-CoV-2 in Advanced HIV Infection" (2024) by Ko & Radecki et al.</p> <p>See <a href="https://github.com/niaid/UMI-pacbio-pipeline/releases/tag/SC2-HIV-demo">the GitHub</a> for demo of SGS and haplotype generation using example data from the study.</p> <p>Raw sequencing data are deposited at <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1055920">PRJNA1055920</a>.</p> <p>READMEs are available within individual folders and releases.</p>
Figure 1 in First record of Brachytemnus porcatus (Germar, 1823) (Coleoptera: Curculionidae) from South-eastern Anatolia (Turkey) and its host Pinus parviflora
Figure 1. Brachytemnus porcatus, laterally. Scale bar = 1.0 mm.
Figure 3 in First record of Brachytemnus porcatus (Germar, 1823) (Coleoptera: Curculionidae) from South-eastern Anatolia (Turkey) and its host Pinus parviflora
Figure 3. Habitat of Brachytemnus porcatus in Pinus parviflora (photo by H. Bolu).
Fig. 2 in The morphological and molecular identification of the tapeworm, Taenia lynciscapreoli, in intermediate and definitive hosts in Poland
Fig. 2. Measurement scheme used to measure rostellar hooks.
Fig. 4 in A study of Cactoblastis cactorum (Lepidoptera: Pyralidae) in its native range: further insights into life cycle, larval identification, developmental parameters, natural enemies, and damage to the host plant Opuntia ficus-indica (Caryophyllales: Cactaceae)
Fig. 4. Number of eggs across months for all sampling sites from Tucumán.
Haemoparasite Infection Risk in Multi-Host Avian System: An Integrated Analysis
<p><strong>Data used in the study: Haemoparasite Infection Risk in Multi-Host Avian System: An Integrated Analysis</strong></p> <ul> <li><strong>Podmokła et al. 2024_data.csv</strong> - This file contains the processed data used in the analysis.</li> <li><strong>Podmokła et al. 2024_raw data_landscape and population variables.csv</strong> - This file includes raw data on landscape and population variables. <ul> <li><strong>Population Metrics</strong>: Density of the same species and all species combined in the study area.</li> <li><strong>Landscape Variables</strong>: High-resolution satellite remote-sensing data reflecting vegetation cover (NDVI), moisture levels (NDMI), and distances to key landscape features such as forest edges, coastlines, pastures, and fields.<br><br></li> </ul> </li> <li><strong>Podmokła et al. 2024_raw data_parasites.csv</strong> - This file contains raw data on <em>Haemoproteus</em>, <em>Plasmodium</em>, and <em>Trypanosoma</em> infection status</li> </ul>
Size matters: The effects of polystyrene nanoplastics on parasite transmission in the Daphnia-Metschnikowia host-parasite system
Open the record for dataset details and reuse information.
Fig. 1 in Association of bat flies (Diptera: Streblidae) and bats: Richness and host specificity in Western Mexico
Fig. 1. Location of the streblid collection sites between 2012 and 2022.
Fig. 1 in Host competence of Algerian Gerbillus amoenus for Leishmania major
Fig. 1. Location map of the study area.
Fusarium Genomes and their Host Ranges
<p>This Appendix dataset accompanies a review of <em>Fusarium </em>genomes and their respective host ranges, entitled 'Navigating the <em>Fusarium</em> species complex: Host-Range Plasticity and Genome Variations', published in Fungal Biology (https://doi.org/10.1016/j.funbio.2024.07.004). The information within this dataset was correct as of March 2024 and includes information on Species, NCBI identifier, Assigned Phylogenetic Clade, The number of genomes available on NCBI, Ungapped Genome Size, Number of Chromosomes, Number of Core and Lineage Specific (LS) Chromosomes (by karyotyping), the Sequencing Methodology and Source. It also includes an extensive, but not universal, curation of known host ranges for each species.</p> <p>It is our hope that by making this dataset freely available it will encourage and inspire further research into the <em>Fusarium </em>genus.</p>
Gravitationally Bound Wide Pairs Hosting Unresolved Astrometric Binaries in Gaia DR3
<p>We present a catalog of 14,791 gravitationally bound wide pairs where one of the components is an unresolved binary with an astrometric orbital or acceleration solution in Gaia DR3. The catalog is separated into two tables corresponding to orbital solutions and acceleration solutions, respectively. </p>
Data from de Vega et al_Flora "Host-driven phenotypic and phenological differentiation in sympatric races of a parasitic plant" [Dataset]
<p>Data from de Vega et al_Flora "Host-driven phenotypic and phenological differentiation in sympatric races of a parasitic plant"</p>
Supplementary material for Proctor et al., "Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in a spider host"
<p>Included are two supplemental files: SupplementaryDocument1 includes primers and cycling conditions for qPCR quanitification of the symbiont Rickettsiella. SupplementaryDocument2 includes all raw data for the experiments included in this manuscript.</p>
Dataset for the paper "Network-Based Differential Abundance Analysis: Bridging Community Interactions and Host-Microbiome Dynamics."
<p>The files with extension rds are files that contain simulated data and the tsv files contain original data along with their meta data.</p>
Table 1 in Newly Discovered Gastropod Hosts of Japanese Cytaeis Species (Cnidaria, Hydrozoa)
<p>Table 1. Data of newly collected hydrozoan specimens sequenced in this study</p><table><tbody><tr><th>DDBJ accession</th><th>Host gastropods</th><th>Locality</th><th>Depth</th><th>Date</th><th>Sampling methods</th></tr></tbody><tbody><tr><th>LC744778</th><td><i>Nassarius splendidulus</i></td><td>Off Kou-yatsu, Tateyama, Chiba,</td><td>15–20 m</td><td>7 July, 2021</td><td>Dredge by R/V Seastar*</td></tr><tr><th></th><td></td><td>Japan</td><td></td><td></td><td></td></tr><tr><th>LC744779</th><td><i>Nassarius splendidulus</i></td><td>Off Saneku, Kakeroma-jima,</td><td>12–19 m</td><td>8 November, 2017</td><td>Scuba**</td></tr><tr><th></th><td></td><td>Kagoshima, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744780</th><td><i>Nassarius albescens</i></td><td>Rocky shore in vicinity of</td><td>0 m</td><td>17 April, 2018</td><td>Baited trap**</td></tr><tr><th></th><td></td><td>Tokashiki harbor, Tokashiki-</td><td></td><td></td><td></td></tr><tr><th></th><td></td><td>jima, Okinawa, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744781</th><td><i>Nassarius albescens</i></td><td>Rocky shore in vicinity of</td><td>0 m</td><td>17 April, 2018</td><td>Baited trap**</td></tr><tr><th></th><td></td><td>Tokashiki harbor, Tokashiki-</td><td></td><td></td><td></td></tr><tr><th></th><td></td><td>jima, Okinawa, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744782</th><td><i>Vexillum exasperatum</i></td><td>Southeast of Hatoma-jima,</td><td>12–15 m</td><td>13 April, 2019</td><td>Scuba***</td></tr><tr><th></th><td></td><td>Okinawa, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744783</th><td><i>Vexillum exasperatum</i></td><td>Southeast of Hatoma-jima,</td><td>12–15 m</td><td>13 April, 2019</td><td>Scuba***</td></tr><tr><th></th><td></td><td>Okinawa, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744784</th><td><i>Argyropeza izekiana</i></td><td>Off Minami-Izu, Shizuoka, Japan</td><td>100–110 m</td><td>12 November, 2015</td><td>Dredge by R/V Tsukuba II****</td></tr><tr><th>LC744785</th><td><i>Argyropeza izekiana</i></td><td>Off Minami-Izu, Shizuoka, Japan</td><td>100–110 m</td><td>12 November, 2015</td><td>Dredge by R/V Tsukuba II****</td></tr><tr><th>LC744786</th><td><i>Sagamilepeta sagamiensis</i></td><td>Off Jogashima, Miura,</td><td>90–100 m</td><td>20 January, 2015</td><td>Dredge by R/V Rinkaimaru****</td></tr><tr><th></th><td></td><td>Kanagawa, Japan</td><td></td><td></td><td></td></tr><tr><th>LC744787</th><td><i>Sagamilepeta sagamiensis</i></td><td>Off Jogashima, Miura,</td><td>90–100 m</td><td>20 January, 2015</td><td>Dredge by R/V Rinkaimaru****</td></tr><tr><th></th><td></td><td>Kanagawa, Japan</td><td></td><td></td><td></td></tr></tbody></table><p>*: Survey by third author (lSeastarz, research vessel of Ochanomizu University).</p><p>**: Surveys undertaken by KUROSHIO project of the National Museum of Nature and Science, Tsukuba.</p><p>***: Survey by third author and T. Naruse (Iriomote Station, the University of the Ryukyus).</p><p>****: Surveys performed by JAMBIO (the Japan Association for Marine Biology conducted by the University of Tsukuba and the University of Tokyo). (lTsukuba IIz, research vessel of Shimoda Marine Research Center, the University of Tsukuba; lRinkaimaruz, research vessel of Misaki Marine Biological Station, the University of Tokyo).</p>
Additional figures: Obliquities of exoplanet host stars. Nineteen new and updated measurements, and trends in the sample of 205 measurements
<p>Here we provide some additional figures as supporting material to Knudstrup et al. (2024).</p> <p><strong>Phase-folded light curves: </strong>The best-fitting models are shown as the white line in the top panel and the residuals are given in the bottom panel.</p> <p><strong>HD 118203 b:</strong> TESS 2 min. cadence data shown as gray points with error bars. Black markers are binned data in ~10 min. intervals.</p> <p><strong>HD 149193 b:</strong> TESS light curves 20 sec., 2 min., and 30 min. cadence data are shown in light gray, gray, and black, respectively.</p> <p><strong>K2-261 b:</strong> K2 light curve in black, TESS 20 sec. and 2 min. in light gray and gray, respectively. A light curve for each passband is shown.</p> <p><strong>K2-287 b:</strong> K2 30 min cadence shown in orange with CHEOPS 1 min. and ground-based 2 min. observations in light gray and gray, respectively. A light curve for each passband is also shown with a matching color. </p> <p><strong>KELT-3 b:</strong> TESS 2 min. cadence data shown in gray.</p> <p><strong>KELT-4Ab:</strong> TESS 2 min. cadence data shown in gray.</p> <p><strong>LTT 1445Ab:</strong> Black TESS 2 min. and gray TESS 20 sec.</p> <p><strong>TOI-451Ab:</strong> Unbinned 2 min. cadence data are shown in gray and in black the binned (~6 min.) data are shown.</p> <p><strong>TOI-813 b:</strong> TESS 20 sec., 2 min., and 30 min. cadence data are shown in light gray, gray, and black, respectively.</p> <p><strong>TOI-892 b:</strong> TESS 2 min. and 30 min. cadence data are shown in gray and black, respectively.</p> <p><strong>TOI-1130 c:</strong> TESS 20 sec. and 30 min. cadence data shown in gray and black, respectively.</p> <p><strong>WASP-50 b:</strong> TESS 20 sec. and 2 min. cadence data shown in gray and black, respectively.</p> <p><strong>WASP-59 b:</strong> TESS 2 min. cadence data shown in gray and ground-based 2 min. KeplerCam photometry in orange.</p> <p><strong>WASP-136 b:</strong> TESS 20 sec. and 2 min. cadence data shown in gray and black, respectively.</p> <p><strong>WASP-172 b:</strong> TESS 20 sec. and 30 min. cadence data shown in gray and black, respectively.</p> <p><strong>WASP-173Ab:</strong> TESS 20 sec. and 2 min. cadence data shown in gray and black, respectively.</p> <p><strong>WASP-186 b:</strong> TESS 20 sec., 2 min., and 30 min. cadence data are shown in light gray, gray, and black, respectively.</p> <p><strong>XO-7 b:</strong> TESS 20 sec., 2 min., and 30 min. cadence data are shown in light gray, gray, and black, respectively.</p> <p><strong>WASP-148 b:</strong> The MuSCAT-2 photometry obtained simultaneous with our spectroscopic transit observations. The observations in the different <em>griz</em> filters are shown as blue, orange, green, and red markers, respectively.</p> <p><strong>WASP-26 b:</strong> Unbinned 20 sec. cadence data from TESS are shown in gray and in black the binned (~6 min.) data are shown.</p> <div> <div> <div> <p> </p> <p><strong>Peak of the stacked CCFs: </strong>Similar to Fig. A.8. we show the peaks of the stacked CCFs for KELT-4 and XO-7 created by assuming the best-fitting value of b from the RV-RM fit.</p> <p><strong>KELT-4A:</strong> The gray contours show a peak around (v sin i⋆,λ)=(6.0 km/s,90 deg). The red contours are the same as created from the posterior shown to the right in Fig. A.9.</p> <p><strong>XO-7: </strong> The gray contours show a peak around (v sin i⋆,λ)=(4 km/s,-60 deg). The red contours are the same as created from the posterior shown to the right in Fig. A.28.</p> <p> </p> </div> </div> </div> <p><strong>References:</strong></p> <div> <div> <div> <p>Knudstrup, E., Albrecht, S. H., Winn, J. N., et al., 2024, arXiv:2408.09793</p> </div> </div> </div>
Data - Host-guest dynamic behavior of melatonin encapsulated in beta-cyclodextrin nanosponges
<p>Amber topologies, input coordinates and MD trajectories for the simulations of:</p> <ul> <li>free melatonin in solution (gaff2+TIP3P)</li> <li>free beta-cyclodextrin in solution (GLYCAM-06j+TIP3P, GLYCAM-06j+OPC, GLYCAM-06j+OPC3)</li> <li>melatonin:beta-cyclodextrin monomeric inclusion complex in solution from three starting geometries (linear, folded1, and folded2) in solution (GLYCAM-06j+TIP3P+gaff2).</li> <li>nanopsonge models with acyclic (ns3, ns4, and ns5) and cyclic (ns5c and ns7c) topologies resulting from beta-cyclodextrin crosslinking with citric acid, in solution (GLYCAM-06j+TIP3P+gaff2).</li> <li>the same nanosponge models (3MT-ns3, 4MT-ns4, 5MT-ns5, 5MT-ns5c, and 7MT-ns7c) loaded with melatonin with 1:1 melatonin:beta-cyclodextrin ratio, in solution (GLYCAM-06j+TIP3P+gaff2).</li> </ul> <p>All MD trajectories are saved with an even stride of 10 ns.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.