Find research datasets worth reusing

Fig. 4 in A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria

Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the orders Propionibacteriales, Pseudonocardiales, Streptomycetales and Streptosporangiales in the class Actinobacteria. Bootstrap values (>70%) are shown at the branching points. Asterisks indicate that the corresponding branches were also recovered in both the maximum-likelihood and maximum-parsimony trees. Bar, 0.02 substitutions per nucleotide position.

Fig. 1 in A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, IMCC 12370; 2, WL1; 3, WS80; 4, MN13; 5, NU 4Y-9-1; 6, YB.Ce-3; 7, WM99; 8, BS8; 9, 61DPR39; 10, Ho-02; 11, RMD 3Y-15-4; 12, HMF2762; 13, NK 4Y-9-3; 14, WW28; 15, EgT0207; 16, KHS04; 17, NK 6Y-6-4; 18, NS 4Y-8-4; 19, 145-10; 20, AX5; 21, NGS 3Y-15-2; 22, R1-6; 23, N1-9; 24, RK 4Y-2-4; 25, RS 4Y-2-4; 26, RMD 3Y-3-1; 27, NU 4Y-9-4; 28, BBT1; 29, BS22; 30, I1-6; 31, T1-6; 32, 7C-18; 33, WM35; 34, BS10.

opencc-by-4.0Feb 2016View details →

Fig. 2 in Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria

Fig. 2. Neighborjoining phylogenetic tree based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the phylum Actinobacteria. The numbers at nodes represent bootstrap values (>50%) obtained by neighborjoining and maximumlikelihood methods, respectively. Closed circles indicate the nodes recovered by maximumlikelihood algorithm. The GenBank accession number of each species is enclosed in parentheses. Bar, 0.02 substitutions per nucleotide position.

Fig. 3 in A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria

Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Micrococcales in the class Actinobacteria. Bootstrap values (>70%) are shown at the branching points. Asterisks indicate that the corresponding branches were also recovered in both the maximum-likelihood and maximum-parsimony trees. Bar, 0.02 substitutions per nucleotide position.

opencc-by-4.0Feb 2019View details →

Fig. 3 in A report of unrecorded bacterial species of Korea isolated in 2016, belonging to the family Deinococcaceae and Planctomycetaceae

Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the genus Blastopirellula. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.02 substitutions per nucleotide position.

Fig. 5 in A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria

Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Solirubrobacterales in the class Thermoleophilia. Bootstrap values (>70%) are shown at the branching points. Asterisks indicate that the corresponding branches were also recovered in both the maximum-likelihood and maximum-parsimony trees. Bar, 0.02 substitutions per nucleotide position.

opencc-by-4.0Feb 2019View details →

Fig. 1 in Unrecorded prokaryotic species belonging to the class Actinobacteria in Korea

Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, CAU 1470; 2, CAU 1475; 3, NA_1; 4, HC_48; 5, D7-24; 6, GH1-18; 7, GH1-39; 8, Gsoil 1173; 9, 17J72-9; 10, IMCC34147; 11, 17J28-11; 12, 17J49-8; 13, 17J49-11; 14, Ibu_O_11; 15, Ibu_O_21; 16, MMS17-SY291; 17, LT2304; 18, JMn2; 19, JMn10; 20, WD9; 21, LM3301; 22, KYW1377; 23, Gsoil 335; 24, Gsoil 1175; 25, BE2-18; 26, Gsoil 1130; 27, 17J48-16; 28, Gsoil 006; 29, Gsoil 262; 30, MMS17-SY284; 31, MMS17-SY227; 32, MMS17-GJ001; 33, Gsoil 961; 34, Gsoil 1526; 35, Gsoil 554.

Fig. 8 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 8. Overview of phylogenetic relationships and molecular and morphological differentiation of C. ama sp. nov. and C. aravera sp. nov. and its parallel species pair (C. ypo Casciotta, Almirón, Piálek, Gómez & Říčan, 2010 and C. yjhui Piálek, Casciotta, Almirón & Říčan, 2019). A. Summary of phylogenetic relationships within the C. mandelburgeri species complex with a nDNA ddRAD SVDQ species tree analysis as main topology focusing on the parallel species pairs in the Piray Guazú (the two new species) and Urugua-í River basins. Species tree is based on 60% SNP-representation matrix using fixed (= homozygotic sites). Red and blue basal branches and nodes in the species tree topology show biogeography (Red: Iguazú, Blue: Middle Paraná). Numbers in parentheses are total numbers of analyzed individuals (in nDNA/ in mtDNA). Numbers at nodes show bootstrap support values. Species colours as in Fig. 5. Blue arrows show nDNA introgression from C. mandelburgeri into C. aravera and C. yjhui. Modified from Říčan et al. (2021b). B. Alternative topology to the right of the tree represents mtDNA relationships of species in the two focal species pairs. Only C. ypo does not have a mitonuclear phylogenetic conflict. Modified from Říčan et al. (2021b). C. Inference of population structure based on the Admixture analysis for the two focal species pairs. Note majority assignment of C. yjhui and C. aravera with C. ypo and C. ama and partial assignment to C. mandelburgeri sensu lato at K10 to K13, and complete separation of all species at K14. Modified from Říčan et al. (2021b). D. Morphometric variation and discrimination of the two species pairs of sympatric species from the Piray Guazú (C. ama, C. aravera) and Urugua-í (C. ypo, C. yjhui) River basins analyzed by PCA based on holotype and paratype specimens ≥ 70 mm SL. Morphological measurements followed Kullander's (1986) methodology for Crenicichla Heckel, 1840 and were used as proportional values in % of SL. Note complete separation of species between ecomorphs (sympatric) and partial separation within ecomorphs (allopatric). Modified from Říčan et al. (2021b).

Fig. 7 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 7. Paratype locality of C. ama sp. nov., tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro (26°35′45.90″ S, 54°16′59.96″ W), 26 November 2016. Crenicichla aravera sp. nov. is absent at this locality.

Fig. 4 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 4. Lower pharyngeal tooth plate in occlusal view. A. Crenicichla ama sp. nov., paratype (MLP 11182, 94.5 mm). B. Crenicichla aravera sp. nov., paratype (MLP 11452, 93.7 mm). Scale bars = 1 mm.

Fig. 6 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 6. Type locality of C. ama sp. nov. and C. aravera sp. nov., upper arroyo Piray Guazú on RP20 (26°26′34.1″ S, 54°08′29.4″ W), 18 February 2012.

Fig. 5. A in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 5. A.Topographic map of the Middle Paraná Basin. B. Satellite map of the Piray Guazú Basin showing distribution of the sympatric C. ama sp. nov. (dark green) and C. aravera sp. nov. (light green), and also of other species in the Iguazú (red) and the Middle Paraná (C. ypo Casciotta, Almirón, Piálek, Gómez & Říčan, 2010: dark orange; C. yjhui: orange; C. hu: yellow; C. mandelburgeri sensu lato: blue, C. gillmorlisi: grey; C. taikyra: pink). Large and small dots in the Piray Guazú Basin show localities where the species is common or rare, respectively. Dark blue and light blue dots show the northern and southern mtDNA clades of C. mandelburgeri, respectively. White bars show location of significant waterfalls. White dot (marked with X in B) shows an upstream locality in the Piray Guazú where both C. ama and C. aravera are absent. Locality 1 (in B, marked with a star) is the type locality of both new species. Localities 2 and 3 (in B) are paratype localities of the two new species. Inset in A shows the parallel species pairs in the Piray Guazú and Urugua-í basins.

Fig. 2 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 2. Crenicichla ama sp. nov., live specimens. A–B. Male paratypes. C–E. Female paratypes. A. MLP 11448, tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro, 26°35′45.90″ S, 54°16′59.96″ W, November 26 2016. B. MLP 11182, 94.5 mm. C–D. MLP 11180. E. MLP 11448, tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro, 26°35′45.90″ S, 54°16′59.96″ W, November 26 2016).

Fig. 3 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 3. Crenicichla aravera sp. nov., live specimens. A. Holotype, ♂ (MLP 11450). B. Paratype, ♂ subadult (MLP 11451, 81.2 mm). C–D. Female paratypes (MLP 11451, 83.3 mm; MLP 11452, 93.7 mm), upper arroyo Piray Guazú on RP20, February 18 2012.

Fig. 1. A in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex

Fig. 1. A. Crenicichla ama sp. nov., holotype, ♂ (MLP 11446, 105.8 mm). B. Crenicichla aravera sp. nov., holotype, ♂ (MLP 11450, 102.5 mm).

Fig. 14 in Comparative and cladistic analyses of the species of the genus Pelodera Schneider, 1866 (Rhabditidae: Nematoda) belonging to the coarctata group

Fig. 14. Pictorial key for the comparison of the species of genus Pelodera Schneider, 1866 (coarctata group) based on the female anterior region, tail region, male tail region (lateral and ventral views) and spicules (distally fused). Scale bars = 20 μm.

Fig. 15 in Comparative and cladistic analyses of the species of the genus Pelodera Schneider, 1866 (Rhabditidae: Nematoda) belonging to the coarctata group

Fig. 15. Cladistic analysis of the species of genus Pelodera Schneider, 1866 (coarctata goup) indicating the position of the new species P. indica sp. nov., P. adeeli sp. nov. and P. paratretzeli sp. nov. within the genus. The evolutionary history was inferred in MrBayes ver. 3.1.2 (Huelsenbeck & Ronquist 2001) by using the Jukes Cantor (JC) model. The phylogenetic tree is supported by posterior probability values with minimum 50% majority rules.

Fig. 9 in Comparative and cladistic analyses of the species of the genus Pelodera Schneider, 1866 (Rhabditidae: Nematoda) belonging to the coarctata group

Fig. 9. Pelodera paratretzeli sp. nov., paratype, ♂ (AMU/ZD/NC slide no. Pelodera paratretzeli sp. nov./ HS/AL/ST/BS/2–12). A. En face view (scanning electron microscopy). B. Anterior region (scanning electron microscopy). C. Anterior end. D. Anterior pharyngeal region. E–F. Posterior pharyngeal region. G. Reflexed testis. H–J. Posterior region (lateral view). K. Posterior region (scanning electron microscopy). Scale bars = 10 μm.

Fig. 8 in Comparative and cladistic analyses of the species of the genus Pelodera Schneider, 1866 (Rhabditidae: Nematoda) belonging to the coarctata group

Fig. 8. Pelodera paratretzeli sp. nov., paratype, ♀ (AMU/ZD/NC slide no. Pelodera paratretzeli sp. nov./ HS/AL/ST/BS/2–12). A. En face view (scanning electron microscopy). B. Anterior region (scanning electron microscopy). C–D. Anterior end. E. Anterior pharyngeal region. F. Posterior pharyngeal region. G–H. Female genital branch. I. Vulval region (scanning electron microscopy). J. Tail region (scanning electron microscopy). K. Posterior region. Scale bars = 10 μm.

Fig. 5 in Comparative and cladistic analyses of the species of the genus Pelodera Schneider, 1866 (Rhabditidae: Nematoda) belonging to the coarctata group

Fig. 5. Pelodera adeeli sp. nov., paratype, ♀ (AMU/ZD/NC slide no. Pelodera adeeli sp. nov./NIT/ rpt/2–10). A–B. En face view (scanning electron microscopy). C. Anterior end. D. Anterior pharyngeal region. E–F. Posterior pharyngeal region. G. Reproductive system. H. Distal parts of ovaries. I. Vulval region (scanning electron microscopy). J. Tail region (scanning electron microscopy). K. Tail with old cuticle. L. Cuticular markings (scanning electron microscopy). Scale bars = 10 μm.