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Incidence and Predictive Factors of Hyperventilation Syndrome in Patients after COVID 19 pneumonia: A Prospective Cohort Study
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Fig. 8 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Fig. 8. Mites (circles) and mite eggs on abdomen of female Ornithomya avicularia, ventral view. Рис. 8. КлеЩи (окружности) и их Яйца на брюШке самки Ornithomya avicularia, сниЗу.
Fig. 1 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Fig. 1. Location of Muraviovka Park (arrow) within the Oblast Amur (dark grey). Рис. 1. Расположение парка Муравьёвка (стрелка) в Амур- ской области (темно-сераЯ Заливка).
Figs 3–7 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Figs 3–7. Hippoboscidae from Muraviovka Park, habitus, dorsal view: 3 — Icosta holoptera; 4 — Ornithoica momiyamai; 5 — Ornithoica unicolor; 6 — Ornithomya aobatonis, stat.rev.; 7 — Ornithomya chloropus. Рис. 3–7. Hippoboscidae парка Муравьёвка, внеШний вид, сверху: 3 — Icosta holoptera; 4 — Ornithoica momiyamai; 5 — Ornithoica unicolor; 6 — Ornithomya aobatonis, stat.rev.; 7 — Ornithomya chloropus.
Fig. 2 in Incidence of louse flies on birds from the Russian Far East (Diptera: Hippoboscidae) and investigation of the status of some taxa by DNA barcoding
Fig. 2: Cytochrome c oxidase subunit I (COI) gene tree for Hippoboscidae. The tree was estimated using maximum likelihood (RAxML). COI sequences used to estimate the tree were obtained from some individuals from Muraviovka park, individuals recollected in Germany, and sequences downloaded from BOLD. Numbers above the branch are bootstrap values. Рис. 2. Дерево субъединицы I цитохром с-оксидаЗы (COI) длЯ Hippoboscidae. Сходство оценивалось с испольЗованием метода максимального правдоподобиЯ (RAxML). Последовательности COI, испольЗованные длЯ оценки дерева, были получены от обраЗцов иЗ парка Муравьёвка, а так же собранных в Германии, и последовательностей, Загруженные иЗ BOLD (Таблица 1). Цифры над уЗлами покаЗывают бутстрап-ЗначениЯ.
Data from: Incidence of cancer-associated thromboembolism in Japanese gastric and colorectal cancer patients receiving chemotherapy: a single-institutional retrospective cohort analysis (Sapporo CAT study)
Objective: Few data regarding the incidence of cancer-associated thromboembolism (TE) are available for Asian populations. We investigated the incidence of TE (TEi) and its risk factors among gastric and colorectal cancer (GCC) patients who received chemotherapy in a daily practice setting. Design: A retrospective cohort study. Setting: A single institutional study that used data from Sapporo City General Hospital, Japan, on patients treated between January 2008 and May 2015. Participants: Five hundred Japanese GCC patients who started chemotherapy from January 2008 to May 2015. Primary and secondary outcome measures: TE was diagnosed by reviewing all the reports of contrast-enhanced computed tomography (CT) performed during the follow-up period. All types of thrombosis detected by CT or additional imaging tests, such as venous TE, arterial TE, and cerebral infarction, were defined as TE. Medical records of all identified patients were reviewed and potential risk factors for TE including clinicopathological backgrounds were collected. We defined the following patients as 'active cancer'; patients with unresectable advanced GCC, cancer recurrence during or after completing adjuvant (Adj) chemotherapy, and/or presence of other malignant tumours. Results: Of the 500 patients, 70 patients (14.0%) developed TE during the follow-up period. TEi was 9.2% and 17.3% in gastric and colorectal cancer patients, 18.1% and 3.5% in active and non-active cancer patients, and 24.0% and 12.9% in multiple and single primary, respectively. Multivariate logistic regression analysis showed that colorectal cancer (odds ratio [OR], 2.371; 95% confidence interval [CI], 1.328 to 4.233), active cancer (OR 7.593; 95% CI 2.950 to 19.543), and multiple primary (OR 2.527; 95% CI 1.189 to 5.370) were independently associated with TEi. Conclusion: TEi was 14.0% among Japanese GCC patients received chemotherapy, and was significantly higher among patients with colorectal cancer, active cancer, and multiple primary than among those with gastric cancer, non-active cancer, and single primary, respectively.
Data from: Fungal disease incidence along tree diversity gradients depends on latitude in European forests
European forests host a diversity of tree species that are increasingly threatened by fungal pathogens, which may have cascading consequences for forest ecosystems and their functioning. Previous experimental studies suggest that foliar and root pathogen abundance and disease severity decrease with increasing tree species diversity, but evidences from natural forests are rare. Here, we tested whether foliar fungal disease incidence was negatively affected by tree species diversity in different forest types across Europe. We measured the foliar fungal disease incidence on 16 different tree species in 209 plots in six European countries, representing a forest-type gradient from the Mediterranean to boreal forests. Forest plots of single species (monoculture plots) and those with different combinations of two to five tree species (mixed species plots) were compared. Specifically, we analyzed the influence of tree species richness, functional type (conifer vs. broadleaved) and phylogenetic diversity on overall fungal disease incidence. The effect of tree species richness on disease incidence varied with latitude and functional type. Disease incidence tended to increase with tree diversity, in particular in northern latitudes. Disease incidence decreased with tree species richness in conifers, but not in broadleaved trees. However, for specific damage symptoms, no tree species richness effects were observed. Although the patterns were weak, susceptibility of forests to disease appears to depend on the forest site and tree type.
Figure 1 in Incidence of tarsonemid mites on Cocos nucifera L. (Arecaceae) from Oman with description of a new species of Nasutitarsonemus Beer and Nucifora (Acari: Tarsonemidae)
Figure 1. Seasonal incidence of tarsonemid mites among coconut trees of Dhofar region, Oman; August being the middle of the humid season, May the middle of the dry hot season, and November through February a transition season with cooler temperatures.
CarcSeq measurement of lung cancer driver mutations predicts mouse strain- and sex-related incidence of spontaneous lung neoplasia
<p>The data contained herein are the fastq files collected for individual mouse lung DNA samples. Ten samples each of male and female, B6C3F1 and CD-1 mouse lung DNA were analyzed using the CarcSeq method for error-corrected next-generation sequencing as previously described [Harris, KL, Walia, V, Gong, B, et al. Quantification of cancer driver mutations in human breast and lung DNA using targeted, error-corrected CarcSeq. <i>Environ Mol Mutagen</i>. 2020; 61: 872– 889. <a href="https://doi.org/10.1002/em.22409">https://doi.org/10.1002/em.22409</a> and Karen L McKim, Meagan B Myers, Kelly L Harris, Binsheng Gong, Joshua Xu, Barbara L Parsons, CarcSeq Measurement of Rat Mammary Cancer Driver Mutations and Relation to Spontaneous Mammary Neoplasia, <em>Toxicological Sciences</em>, 2021;, kfab040, <a href="https://doi.org/10.1093/toxsci/kfab040">https://doi.org/10.1093/toxsci/kfab040</a>]. A readme text file provides the key to which sample numbers correspond with which mouse strain and sex. All the fastq files within a given folder were used to construct single strand consensus sequences, which were then subject to downstream analyses as reported in the associated publication.</p>
Database of Incidence per reef and región of the research "Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) for capturing the biological diversity of two coral reefs in the Yucatán Península, México"
<p><strong>*Corresponding autor: </strong>edlinguerra@gmail.com</p> <p>This database contains information of specimens of the cryptofauna assemblages identified by experts of each Phyla per reef and región and is a complementary material of the research “Evaluation of the use of Autonomous Reef Monitoring Structures (ARMS) to estimate cryptic diversity in two coral reefs of the Yucatan Península, México”. For the present research, animals of the appropriate species and quality were selected and the minimum number required to obtain scientifically valid results were considered, all animals were anesthetized and deposited in National Collections: Colección Regional de Crustáceos de la Península de Yucatán (SEMARNAT number: YUC-CC-255-11), Colección Regional de Moluscos de la Península de Yucatán (SEMARNAT number: YUC. -INV-240-01-11), Colección Regional de Equinodermos de la Península de Yucatán (SEMARNAT number: DGVS-CC-307-18), Colección Regional de Ascidias de la Península de Yucatán (SEMARNAT number: DGVS-CC-306-18), Colección Regional de Briozoos de la Península de Yucatán (SEMARNAT number: DGVS-CC-308-18), Colección Regional de Cnidarios de la Península de Yucatán (SEMARMAT number: YUC-CC-254-11), Colección Regional de Policládidos de la Península de Yucatán (105 Collection CONABIO) and Colección Nacional del Phyla Porifera “Gerardo Green” of Universidad Nacional Autónoma de México, Facultad de Ciencias, Sisal, Mexico (UMDI-Sisal) and within accordance with scientific collection permits: PPF/DGOPA: 295/17, 300/17, 294/17, 293/17, PPF/DGOPA-076/19 issued by Mexico’s State Secretaria de Agricultura, Ganaderia, Desarrollo Rural, Pesca y Alimentación (SAGARPA).</p> <p><strong>CC-BY-NC-N</strong></p>
New incidence or recurrence hepatocellular carcinoma (HCC) in genotype 4 hepatitis C virus treated with sofosbuvir/daclatasvir with or without ribavirin
<p><span><b>Background</b>: Several studies have resulted in controversial data about the recurrence or new incidence of hepatocellular carcinoma (HCC) in patients with hepatitis C who were treated with direct-acting antivirals (DAAs). </span></p> <p><span><b>Aim:</b> This observational study aimed to assess the occurrence rate of HCC in patients who developed a sustained virological response (SVR).. </span></p> <p><span><b>Methods</b>: A six-month prospective study was done at the National Hepatology and Tropical Medicine Research Institute [NHTMRI] in Cairo, Egypt on 150 chronic hepatitis C (CHC) patients treated with sofosbuvir and daclatasvir with or without ribavirin. Patients were assigned into two groups according to their laboratory values to either receive sofosbuvir/daclatasvir and ribavirin (S/D/R) or receive only sofosbuvir/daclatasvir (S/D). The main outcome measure was the occurrence of HCC.</span></p> <p><span><b>Results</b>: SVR-12 was 100%. 8.5% of patients developed HCC in the S/D/R group, while 0% in the S/D group.</span></p> <p><span><b>Conclusion:</b> New incidence or recurrence of HCC may occur in CHC genotype 4 cirrhotic patients receiving sofosbuvir/daclatasvir and ribavirin (difficult to treat) although achieving SVR. The cause of HCC development in this study is cirrhosis, not the administered DAAs.</span></p>
Age dependent incidence rates (2)
<p>Figure 4 shows the sex-specific logarithmic incidence depending on age (50 to 90 years) for the period from 2011 to 2019. Across all evaluated years we found both, an age-dependent, exponential increase in the incidence rates for both sexes and a distinct increase in incidences in the young age groups of women (about tenfold increase in incidences up to 2019) . Up to the age of about 70 years, men show a higher incidence rate for long-term care than women in 2011. For people older than 70 years, the ratio changes, with a higher incidence of needing long-term care for women than for men. This point of intersection of the incidence rates was evident in all plots of the time course (table 2). We see a left shift, to younger age groups, between 2011 and 2019 and from this age (intersection point) onwards the incidence for women exceeds that of men. In addition to that, the incidence in the scenario with higher mortality rate ratios (scenario 1) is always above the curve from the scenario with lower mortality rate ratios (scenario 2). We also see that the gap between the incidences increases with age.</p>
Age dependent incidence rates (1)
<p>Figure 3 shows an increasing incidence rate dependent on age. Additionally we see increasing incidence rates from 2011 to 2019, with bigger steps between the incidences in younger age groups.</p>
Dataset: Architecture-based Attack Path Analysis for Identifying Potential Security Incidents
<p>Dataset for the Publication of <em>Architecture-based Attack Path Analysis for Identifying Potential Security Incidents.</em></p> <p>A description of the tooling can be found in our <a href="https://fluidtrust.github.io/attack-propagation-doc/">documentation</a>.</p>
Incidence and Nature of Heparin-induced Skin Lesions in Medical Patients
ClinicalTrials.gov study NCT00510432. IPD Sharing: Not stated. Countries: 1. Publications: 14.
Incidence and Risk Factors of Prolonged Grief in Palliative Care Units
ClinicalTrials.gov study NCT03748225. IPD Sharing: NO. Countries: 1. Publications: 5.
GnRH Agonist (GnRHa) Withdrawal at Late Stage of Long Protocol and the Incidence of Ovarian Hyper-stimulation
ClinicalTrials.gov study NCT01634724. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Incidence of cCPHD in Denmark - a National Observational Study
ClinicalTrials.gov study NCT05334563. IPD Sharing: YES. Countries: 1. Publications: 16.
Influence of Pancreatic Transection With CUSA on Postoperative Pancreatic Fistula Incidence (PANCUT)
ClinicalTrials.gov study NCT06135012. IPD Sharing: NO. Countries: 1. Publications: 1.
Reduction of AF Ablation Induced Thrombo-Embolic Incidence Pilot Study
ClinicalTrials.gov study NCT02275260. IPD Sharing: Not stated. Countries: 5. Publications: 4.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.