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12,393 results for “materiality”
Supplementary material: Accuracy of finite fault slip estimates in subduction zone regions with topographic Green's functions and seafloor geodesy
<p># Code attached to the manuscript entitled "Accuracy of finite fault slip estimates in subduction zone regions with topographic Green's functions and seafloor geodesy"</p> <p>These python scripts are for producing Figure 1 (trench-perpendicular topographic profile for regions where some megathrust earthquakes occurred) and the average topographic profile that is used in the paper.</p> <p> </p>
Data & scripts - The effect of temperature-dependent material properties on simple thermal models of subduction zones
<p>Data and scripts used in Van Zelst et al. (2023, Solid Earth): 'The effect of temperature-dependent material properties on simple thermal models of subduction zones'. Includes the data and figures for the benchmark of Van Keken et al. (2008) plus the results from our code xFieldstone; processing and visualisation scripts; raw and final figures; and all results for all model runs used in the publication (as listed in Table 1 in the paper). </p>
Supplementary materials for: Actually accessible data: An update and a call to action
<p>These are the supplementary materials for the article "Actually Accessible Data: An Update and a Call to Action." The project contains three files:</p> <ol> <li>Colon-Karcher-Goben_Accessibility-of-Popular-Data-Repositories.xlsx shows the results of automated accessibility checks of seven popular data repositories in the United States and Europe. For each repository a search or browse page as well as a typical dataset landing page were selected and checked with two prominent accessibility tools AXE (https://www.deque.com/axe/) and WAVE (https://wave.webaim.org/). Checks were initially performed in Spring 2022. The reported (mostly unchanged) results are from tests on April 25, 2023. They were performed using Firefox 112.0.2 for Windows with both browser add-ons installed, AXE v. 4.6.3, WAVE v. 3.2.</li> <li>Colon-Goben-Karcher_Acessibility-FLOSS-Repositories.xlsx describes the treatment of digital accessibility in the developer-oriented documentation of six popular open-source (data) repository software projects. The project documentation was reviewed by two researchers with a background in open source software (Karcher as well as a graduate assistant at the Qualitative Data Repository) who looked for specific sections on accessibility and also used search terms to identify relevant sections. This document reflects the status as of April 2022.</li> <li>Colon-Goben-Karcher_Search-Strategies.docx Briefly discusses the literature search strategies conducted for relevant literature. Initial searches in Google Scholar and Scopus were performed in March-April 2022. Additional searches in LISTA are from March-April 2023.</li> </ol>
Supplementary Material to "Identifying major research themes in Sport Science" (Interactive Science Maps)
<p><strong>Links to interactive maps</strong></p> <p>(1) Link: <strong><a href="https://app.vosviewer.com/?map=https://drive.google.com/uc?id=182n1HEZygAoS_9Caxj83hi27y41N6SWm&item_size=4">World Map</a></strong> (<a href="https://tinyurl.com/2zufzslg">https://tinyurl.com/2zufzslg</a>)</p> <p>(2) Link: <strong><a href="https://app.vosviewer.com/?map=https://drive.google.com/uc?id=182n1HEZygAoS_9Caxj83hi27y41N6SWm&item_size=5&item_size_variation=0.4&scale=0.9">Sport Science Map</a></strong> (<a href="https://tinyurl.com/2fztyjhf">https://tinyurl.com/2fztyjhf</a>)</p>
In Situ Exfoliation Method of Large-Area 2D Materials
<p>Datasets for In Situ Exfoliation Method of Large-Area 2D Materials publication.</p> <p>Extreme UV photoemission band mapping of 2D materials WS2, WSe2 and WTe2 exfoliated in ultra-high vacuum on Au(111), Ag(111) and Ge(001), and AgTe alloy on Ag(111). Measurements were conducted at the BALTAZAR facility in Stockholm, Sweden using a laser-based setup with arepetition rate of 250 kHz, and the fifth harmonic 18.1 eV, and at the SGM-3 beamline of the 3rd-generation ASTRID2 synchrotron radiation source in Aarhus, Denmark with a photon energy 49 eV, 53 eV and 63 eV. All measurements were performed at room temperature.<br> <br> Experimental data are provided in ibw format (Igor Pro).</p>
Supplementary Material for Extended Abstract "Creating a Synthesizer from Schrödinger's Equation"
<p>Audio and video examples of the sonification method described in the paper. It was implemented as a VST plugin and played with MIDI notes.</p>
Supplementary material for the manuscript of G.E. Gus'kov "The first record of adult Boops boops (Perciformes, Sparidae) near the Caucasian coast of the Black sea".
<p>Video and photographs confirming the record of Boops boops (Pisces: Perciformes: Sparidae) near the Caucasian coast of the Black sea (Russian sector)</p>
Supplementary Material to the Publication: Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany
<p>OHEJP Project: BeOne</p> <p><em>Salmonella enterica </em>serovar Dublin (<em>S</em>. Dublin) is a host-adapted serovar that causes enteritis and/or systemic diseases in cattle. Because the serovar is not host-specific, it can infect other species, including human beings, causing severe disease and a higher mortality rate than other non-typhoidal serovars. Given that human illnesses are primarily caused by contaminated milk, milk products, and beef, data on the genetic connection between <em>S</em>. Dublin strains from livestock and food should be analyzed. </p> <p>Whole genome sequencing (WGS) was performed on 144 <em>S</em>. Dublin strains from cattle and 30 strains from food. Multilocus sequence typing (MLST) found that the majority of livestock and food isolates were of the sequence type ST-10. As discovered by core-genome Single-Nucleotide Polymorphisms Typing and core-genome MLST, 14 of 30 strains from food origin were clonally related to at least one strain from cattle. Without outliers, the remaining 16 food-borne strains fit into the genomic structure of <em>S</em>. Dublin in Germany. WGS demonstrated to be an effective method not only for learning about the epidemiology of Salmonella strains, but also for detecting clonal relationships between organisms isolated at different stages of production. This study discovered a strong genetic link between <em>S</em>. Dublin strains from cattle and food, and thus the potential to cause human infections. <em>S</em>. Dublin strains from both origins have a nearly comparable collection of virulence factors, emphasizing their ability to produce severe clinical symptoms in animals as well as humans, emphasizing the importance of effective <em>S</em>. Dublin management in a farm to fork strategy.</p>
Supplementary material for: Accounting for within-species variation in continuous trait evolution on a phylogenetic network
<p>This supplementary material contains data and scripts for (1) a simulation study assessing the performance of our phylogenetic comparative method on trait data generated using an actual species network, and (2) a comparative analysis of how <em>Polemonium </em>leaflet size covaries with geographical predictors, assuming either a reticulate or non-reticulate time-calibrated phylogeny, accounting for or ignoring within-species variation.</p> <p>There are two top-level folders:</p> <p>(1) simulations: contains scripts to replicate the simulation study and associated figures in the subfolder "scripts", and results from the simulations in the subfolder "data".</p> <p>(2) polemonium: contains uncalibrated/calibrated species phylogenies (.tre), gene trees (.t, .tre) and genetic distance estimates (.csv) used for calibration, morphological and geographical data for <em>Polemonium </em>(.csv), and model estimates (.csv) in the subfolder "data"; and scripts to do calibration, preprocess the trait data, fit models and save estimates, and recreate figures from the article in the subfolder "scripts".</p> <p>The archive and each top-level folder contain their own README file with more detailed information.</p>
Scanpy Parameter Iterator - Galaxy Training Material
<p>Input dataset for the Scanpy Parameter Iterator tutorial on Galaxy Training Network. It is an extension of <a href="https://training.galaxyproject.org/training-material/topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html">Filter, Plot and Explore Single-cell RNA-seq Data</a> tutorial.</p>
Dataset and supporting materials of "Numerical simulation of orographic gravity waves observed over Syowa Station. Part 1: Wave propagation and breaking in the troposphere and lower stratosphere" by Kohma et al.
<p>Dataset and supporting materials of "Numerical simulation of orographic gravity waves observed over Syowa Station. Part 1: Wave propagation and breaking in the troposphere and lower stratosphere" by Kohma, M., K. Sato, D. C. Fritts, & T. S. Lund.</p>
Dataset for: Exploring Battery Cathode Materials in the Li-Ni-O Phase Diagrams using Structure Prediction
<p>The Li-Ni-O phase diagram contains several electrochemically active ternary phases. Many compositions and structures in this phase space can easily be altered by (electro-)chemical processes, yielding many more (meta-)stable structures with interesting properties. In this study, we use<em> ab initio </em>random structure searching (AIRSS) to accelerate materials discovery of the Li-Ni-O phase space. We demonstrate that AIRSS can efficiently explore structures (e.g. LiNiO<sub>2</sub>) displaying dynamic Jahn-Teller effects. A thermodynamically stable Li<sub>2</sub>Ni<sub>2</sub>O<sub>3</sub> phase which reduces the thermodynamic stability window of LiNiO<sub>2</sub> was discovered. AIRSS also encountered many dynamically stable structures close to the convex hull. Therefore, we confirm the presence of metastable Li-Ni-O phases by revealing their structures and properties. This work will allow Li-Ni-O phases to be more easily identified in future experiments and help to combat the challenges in synthesizing Li-Ni-O phases.</p> <p>This dataset contains the raw research data and key analysis files for "Exploring Battery Cathode Materials in the Li-Ni-O Phase Diagrams using Structure Prediction". </p> <ul> <li>`known_phases_aiida_data.zip` and `new_phases_exports.aiida.zip` contain the archives exported from the <a href="https://www.aiida.net">AiiDA framework</a> which was used to perform parts of the DFT calculations for this project. </li> <li>`search_data.zip` contains search seed files and the structures generated by the searches.</li> <li>`data_analysis.zip` contains the data and notebooks to reproduce the figures and tables shown in the manuscript.</li> </ul>
Results from participants in interlaboratory analysis of a candidate of reference material for hydrogen cryoadsorption
<p>Isothermal data from participants in an interlaboratory analysis of adsorption at 77 K of a candidate reference material for hydrogen cryoadsorption in the framework of the MefHySto project (Metrology for advance hydrogen storage solutions).</p>
Chapter 29. Supplementary material. Remote sensing of invasive Australian Acacia species: State of the art and future perspectives
<p>This is online supplementary material for the Chapter "Remote sensing of invasive Australian Acacia species: State of the art and future perspectives" authored by A Große-Stoltenberg, I Lizarazo, G Brundu, VP Gonçalves, LP Osco, C Masemola, J Müllerová, C Werner, I Kotze, and J Oldeland, corresponding to Chapter 29 In: "Wattles: Australian Acacia species around the world". Eds: D.M. Richardson, J.J. Le Roux, and E. Marchante (CABI, UK, 2023).”</p>
Is bedding material a more effective thermal insulator than trap cover for small mammal trapping? A field experiment
<p>This dataset is currently part of a manuscript undergoing a review process in the Journal of Thermal Biology. The manuscript compares the thermal insulation provided by a cover, bedding, and a combination of both when applied to small mammal traps. Treatments were tested in two different environmental conditions, one where temperature is more stable (near the sea coast), and another where temperature fluctuations are more severe (in the Pyrenees).</p> <p>The first sheet contains the data collected from four Sherman traps placed in an outside terrace. One trial lasted four days, and a second trial lasted two days. Temperature (ºC) and relative humidity (%) were recorded every 10 minutes with data loggers (Elitech RC-51) situated inside each trap. Traps were assigned to a treatment as follows: <em>Cover</em> (<em>CV</em>), trap with only the PVC cover; <em>Bedding</em> (<em>BD</em>): Trap with water-proof cotton wool inside; <em>Cover+Bedding</em> (<em>CV+BD</em>): trap with the cover and with water-proof cotton wool inside; <em>Control </em>(<em>CN</em>), a conventional trap; Another logger was placed outside to have measures of air temperature (<em>Air</em>). In the case of BD<em> </em>treatment, data-loggers were placed inside the cotton.</p> <p>The second sheet contains the data collected from three traps of three different models: Sherman, Longworth, and Heslinga. To avoid ethical concerns related with keeping wild animals trapped for long periods of time, we placed hand-warmer heat pads (<em>Terratherm</em>) – with up to 12 hours of warmth – within traps to simulate endothermic metabolism generated by a trapped small mammal (Kearney et al., 2011; Griffiths et al., 2017). Despite the covers being designed for Sherman traps, in the trials we also included two other commercial traps used in the SEMICE monitoring programme (Torre et al., 2018), <em>Longworth</em> (Longworth Scientific Instrument Co., Oxford, UK), and <em>Heslinga</em> (<a href="http://www.heslingatraps.eu/">www.heslingatraps.eu</a>) for thermal insulation capacity comparisons. The experiments were conducted in two contrasting climatic areas in Barcelona province (coastal, 22 m.a.s.l, and Pyrenees, 650 m.a.s.l), to expand the range of temporal and spatial variation in winter temperatures. We performed 63 trials combining three trap models and three treatments. Traps were placed in similar conditions and submitted to the same <em>CN</em>, <em>BD</em> and <em>CV+BD</em> treatments cited above. The <em>CV</em> treatment (trap with only the PVC cover) was excluded from the second experiment due to its poor performance in retaining temperature and humidity, as demonstrated in the first experimental session (see ‘Results’ section). Furthermore, the CV treatment does not represent a common treatment in small mammal trapping studies. Inside each trap we placed a temperature data logger (iButton, <em>Thermochron</em>) protected within an aluminium mesh, an ideal material to house the small temperature loggers (Orrock and Connolly, 2016). In the <em>Bedding</em> treatments, the mesh was placed inside the cotton. Temperature was recorded continuously every five minutes. To avoid direct heat exchange between the heat pad and the data logger, we placed the heat pad at the end of the trap close to the back door, as far away from the data logger as possible. To quantify the heat output of the heat pads through time, we placed a data logger below a hand warmer in six different trials, recording temperatures every five minutes during a 12-hour period. All experiments were conducted during winter 2021.</p>
Supplementary materials for: Use and detection of a vitamin B1 degradation product yields new views of the marine B1 cycle and plankton metabolite exchange
<p>Vitamin B1 (thiamin) is a vital nutrient for most cells in nature including marine plankton. Early and recent experiments show that B1 degradation products instead of B1 can support the growth of marine bacterioplankton and phytoplankton. However, the use and occurrence of some degradation products remain uninvestigated – namely N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine (FAMP) – which has been a focus of plant oxidative stress research. We investigated the relevance of FAMP in the ocean. Experiments and global ocean meta-omic data indicate that eukaryotic phytoplankton, including picoeukaryotes and harmful algal bloom species, use FAMP while bacterioplankton appear more likely to use deformylated FAMP, 4-amino-5-aminomethyl-2-methylpyrimidine (AmMP). Measurements of FAMP in seawater and biomass revealed that it occurs at picomolar concentrations in the surface ocean, heterotrophic bacterial cultures produce FAMP in the dark – indicating non-photodegradation of B1 by cells, and B1-requiring (auxotrophic) picoeukaryotic phytoplankton produce intracellular FAMP. Our results require an expansion of thinking about vitamin degradation in the sea, but also the marine B1 cycle – where it is now crucial to consider a new B1-related compound pool (FAMP) – as well as generation (dark degradation – likely via oxidation), turnover (plankton uptake), and exchange of the compound within networks of plankton.</p>
Supplementary Material: Numerical Simulations of Seismoacoustic Nuisance Patterns from an Induced M 1.8 Earthquake in the Helsinki, Southern Finland, Metropolitan Area
<p>Seismic waves can couple with the atmosphere and generate sound waves. The influence of faulting mechanisms on earthquake sound patterns provides opportunities for earthquake source characterization. Sound radiated from earthquakes can be perceived as disturbing, even at low ground-shaking levels, which can negatively impact the social acceptance of geoengineering applications. Motivated by consistent reports of felt and heard disturbances associated with the weeks-long stimulation of a 6-km-deep geothermal system in 2018 below the Otaniemi district of Espoo, Helsinki, we conduct fully coupled 3D numerical simulations of wave propagation in the solid Earth and the atmosphere. We assess the sensitivity of the ground shaking and audible noise distributions to the source geometry of the induced earthquakes based on the properties of the largest local magnitude ML 1.8 event. Utilizing recent computational advances and the open-source software SeisSol, we model seismoacoustic frequencies up to 25 Hz, thereby reaching the lower limit of the audible sound frequency range. We present synthetic distributions of shaking and audible sounds at the 50–100 m scale across a 12 km × 12 km area and discuss implications for better under- standing seismic nuisances in metropolitan regions. In five 3D coupled elastic–acoustic scenario simulations that include data on topography and subsurface structure, we analyze the ground velocity and pressure levels of earthquake-generated seismic and acoustic waves. We show that S waves generate the strongest sound disturbance with sound pressure levels ≤ 0.04 Pa. We use statistical analysis to compare our noise distributions with commonly used empirical relationships. We find that our 3D synthetic amplitudes are generally smaller than the empirical predictions and that the interaction of the source mechanism-specific radiation pattern and topography can lead to significant nonlinear effects. Our study highlights the complexity and information content of spatially variable audible effects associated with small induced earthquakes on local scales.</p>
Techno-economic evaluation and resource assessment of hydrogen production through offshore wind farms: A European perspective - Supplementary material
<p>This is the additional material provided with the journal article "Techno-economic evaluation and resource assessment of hydrogen production through offshore wind farms: A European perspective" published in Renewable and Sustainable Energy Reviews (<a href="https://doi.org/10.1016/j.rser.2023.113699">https://doi.org/10.1016/j.rser.2023.113699</a>).</p> <p>Datasets are provided as NetCDF files for European maps and CSVfor Economically Attractive Resource curves.</p> <p>European and National plots are provided as PDF files.</p>
Probing Hyperbolic and Surface Phonon-Polaritons in 2D Materials Using Raman Spectroscopy
<p>Probing Hyperbolic and Surface Phonon-Polaritons in 2D materials using Raman Spectroscopy<br> Alaric Bergeron, Clément Gradziel, Richard Leonelli, Sébastien Francoeur<br> Published in Nat. Comm. (2023).</p> <p>https://doi.org/10.1038/s41467-023-39809-3</p> <p>Raw spectral data used for the preparation of Figures 1(b-c), 2(b-c) and 3. Please contact the corresponding author at sebastien.francoeur@polymtl.ca for additional information.<br> <br> </p>
Supplementary material for "A Rapid, Open-Source CCT Predictor for Low Alloy Steels, and its Application to Compositionally Heterogeneous Material"
<p>The complete collection of measured, modelled and analysed data associated with the work "A Rapid, Open-Source CCT Predictor for Low Alloy Steels, and its Application to Compositionally Heterogeneous Material" and includes:</p> <ol> <li>Measured and analysed dilatometry data.</li> <li>Optical micrographs of as-cooled microstructures.</li> <li>Microhardness measurements of the as-cooled samples.</li> <li>PAG size analysis.</li> <li>Modelled CCT data.</li> <li>SA-540 EPMA data.</li> <li>Modelled results from adapting the model to consider SA-540 chemical heterogeneity.</li> <li>Full chemical analysis for each alloy examined.</li> <li>Modelled Thermo-Calc CCT data.</li> <li>Modelled JMatPro CCT data.</li> </ol>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.