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Amplicon_sorter: a tool for reference-free amplicon sorting based on sequence similarity and for building consensus sequences
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Numerical data of hydrodynamics and sediment transport for three reference scenarios: N1, P, and N2
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Analysis Scripts and Data for SAMPL5 Distribution Coefficients Submission Analysis and Reference Calculations,
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Paul Lake (MI): long-term reference lake in Cascade Project, 1984-2007
Lake data were obtained from Stephen Carpenter and from the long-term study of lakes at the University of Notre Dame Environmental Research Center (UNDERC) known informally as the “Cascade Project.” This project has resulted in multiple publications, including Carpenter & Kitchell’s 1993 book “The Trophic Cascade in Lakes.” Chapter 2 of this book has descriptive information about the study site. Routine sampling occurred weekly-monthly during summer months, with a few rare inclusions outside of the May-Aug period. Samples were collected from a fixed transect in the lake. Sampling frequency and variables that were measured/reported vary from year to year as a function of the specific focus of the active grant at the time (and budgetary constraints). Samples were collected either at the surface (reported as 0 m) or were integrated samples for the epilimnion (referred to as PML, or pool mixed layer by this group) with water collected using a Van Dorn bottle from 0, 1, and 2 m (usually-or from top, middle, and bottom of mixed layer) and pooling equal volumes of water from these three depths.
NASA-SSH Along-Track Sea Surface Height from Standardized Reference Missions Version 1
The NASA-SSH Along-Track Sea Surface Height from Standardized Reference Missions Version 1 dataset produced by NASA provide observations of sea surface height, or sea level, anomaly measured using radar altimeter satellites in the reference mission orbit. These include TOPEX/Poseidon, the Jason series, and Sentinel-6. The data begin in Oct 1992, with data from TOPEX/Poseidon, and continues to the present. In this data set all missions have been referenced to a common baseline, additional quality control has been performed, and errors with wavelengths around one orbital cycle have been reduced. <br>The data consist of along-track observations of sea surface height, collected approximately once per second (1 Hz), and are parsed into files containing one day’s worth of data per file. A flag variable is included to allow users to easily select only valid observations, and a variable containing sea surface height with the flag applied and a small amount along track smoothing (~20 km), is suggested for most users. <br>Additionally, a “basin” flag variable is provided, along with a table defining it. This allows users to easily select all observations from a specific body of water. The basin flag assigns a number to each point corresponding to a specific ocean basin or lake. A table is included with a text description of each basin number. A text version of that table is available (https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/basin_name_table.txt). The basin definitions can be downloaded as a shape file from https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/basin_polygon_files.tar.gz, or as a kml file https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/NASA-SSH_Basins.kmz. <br>New data will be released approximately once per week, with a latency of a few weeks.
NASA-SSH Simple Gridded Sea Surface Height from Standardized Reference Missions Only Version 1
The NASA-SSH Simple Gridded Sea Surface Height from Standardized Reference Missions Only Version 1 dataset produced by NASA provides 2-D maps of sea surface height, or sea level, anomaly once every 7 days. The grids are based on observations of sea surface height from the radar altimeter satellites in the reference mission orbits, including TOPEX/Poseidon, the Jason series, and Sentinel-6. The data begin in Oct 1992 and continue through the present. They are created using the NASA-SSH Along-Track Sea Surface Height from Standardized Reference Missions Version 1 dataset. <br>The grids consist of 10-days worth of observations, which covers approximately 1 complete repeat cycle of observations from the reference missions. The grids are produced on a 0.5-degree latitude and longitude grid, by taking a simple gaussian weighted spatial average with a width of 100 km. The grids are produced every 7 days to allow for easy interpolation in time. However, since they are created using 10-days of data, there is some overlap of information between adjacent time steps. The grids are also created using the basin flags to avoid mixing data from distinct ocean basins (for example, to avoid mixing observations from the Caribbean Sea with observations from the Pacific across the Isthmus of Panama). Connected basins are allowed to share data, however. This is accomplished by using a table of connections between basins. The basin connection table is available (https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/basin_connection_table.txt). The basin definitions can be downloaded as a shape file from https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/basin_polygon_files.tar.gz, or as a kml file https://archive.podaac.earthdata.nasa.gov/podaac-ops-cumulus-docs/web-misc/nasa-ssh/NASA-SSH_Basins.kmz. <br>A new grid will be released approximately once per week, with a latency of a few weeks.
Publicly available GWAS summary statistics, harmonized and imputed to GTEx v8' variant reference
<p># harmonized and imputed GWAS summary statistics</p> <p> </p> <p>* `harmonized_imputed_gwas.tar` contains 114 publicly available GWAS traits, harmonized and imputed to GTEx v8 reference</p> <p> </p> <p>* `gwas_metadata.txt` is a table with useful information about each trait, such as:</p> <p>- Tag: trait name (also in the file name)</p> <p>- PUBMED_Paper_Link: PUBMED or publication URL (if available)</p> <p>- Portal: URL to web portal from which data was downloaded</p> <p>- Consortium: GWAS Consortium authoring the data</p> <p>- Sample_Size: number of individuals covered in the study</p> <p>- Population: individuals'ancestry (EUR, EAS, etc)</p> <p>- abbreviation: short name used for figures</p> <p>- new_abbreviation: alternative name for additional figures</p> <p>- Deflation: whether imputed summary statistics exhibited deflation (i.e. association p-values are lower than expected by chance. The summary statistics imputation method is conservative, and in public GWAS with few observed variants (<2M), the distribution of p-values lags towards lower significance spectrums.</p> <p># Data usage policy</p> <p>When using this data, you must acknowledge the source by citing the publication "Widespread dose-dependent effects of RNA expression and splicing on complex diseases and traits" (https://doi.org/10.1101/814350).</p> <p># Disclaimer</p> <p>The data is provided "as is", and the authors assume no responsibility for errors or omissions. <br> The User assumes the entire risk associated with its use of these data. <br> The authors shall not be held liable for any use or misuse of the data described and/or contained herein. <br> The User bears all responsibility in determining whether these data are fit for the User's intended use. </p> <p>The information contained in these data is not better than the original sources from which they were derived,<br> and both scale and accuracy may vary across the data set. <br> These data may not have the accuracy, resolution, completeness, timeliness, or other characteristics<br> appropriate for applications that potential users of the data may contemplate. <br> <br> The user is responsible to comply with any data usage policy from the original GWAS studies;<br> refer to the list of traits described [here](https://www.biorxiv.org/content/10.1101/814350v1)<br> to identify their respective Consortia's requirements.</p> <p><br> THE DATA IS PROVIDED WITHOUT WARRANTY OF ANY KIND,<br> EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,<br> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.<br> IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,<br> WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,<br> OUT OF OR IN CONNECTION WITH THE DATA OR THE USE OR OTHER DEALINGS IN THE DATA.</p>
Genotype reference database (GRDB) for Alouatta caraya
<p>The black and gold howler monkey (<em>Alouatta caraya</em>) is a neotropical primate that faces the highest capture pressure for illegal trade in Argentina. Here, present a Genotype reference database (GRDB) this species. Overall, we were able to correctly assign 73% of the individuals in the database to nearest population of origin, and 93.3% to their cluster of origin. </p>
Reference set of random studies from Embase
<p>These are two datasets in a simple Excel file, and separated as two .csv files. They contain a random set of Embase studies, that can be used for projects around search strategy development.</p> <p>1. A random selection of 1000 articles from Embase, letters removed. Two assessors indicated whether a study was a diagnostic accuracy study or not. The scores of the assessors and the final decision are included in the dataset, as well as comments. Also, for each study has been indicated whether they are labelled as "Diagnostisc Test Accuracy Study" by Embase.</p> <p>2. A random selection of 1223 articles from Embase, letters removed and limited to human-only studies. Two assessors indicated whether a study was a diagnostic accuracy study or not. The scores of the assessors and the final decision are included in the dataset, as well as comments. Also, for each study has been indicated whether they are labelled as "Diagnostisc Test Accuracy Study", "Diagnostic Test Accuracy" or as "Sensitivity and Specificity" by Embase.</p>
Appendix Measurements for species of Breviphysoderes gen. nov., Macrophysoderes gen. nov., Nanophysoderes gen. nov., Paraphysoderes Villiers, 1962 and Physoderes Westwood, 1945 (in mm). Numbers in parentheses beside mean values refer to sample size. SD = Standard deviation. In the USI column, UCR _ ENT catalogue numbers are referred to by the number only. in Uncovering hidden diversity: phylogeny and taxonomy of Physoderinae (Reduviidae, Heteroptera), with emphasis on Physoderes Westwood in the Oriental and Australasian regions
<p><b>Appendix</b> Measurements for species of <i>Breviphysoderes</i> gen. nov., <i>Macrophysoderes</i> gen. nov., <i>Nanophysoderes</i> gen. nov., <i>Paraphysoderes</i> Villiers, 1962 and <i>Physoderes</i> Westwood, 1945 (in mm). Numbers in parentheses beside mean values refer to sample size. SD = Standard deviation. In the USI column, UCR _ENT catalogue numbers are referred to by the number only.</p><table><thead><tr><th>Species</th><th>Sex</th><th>USI</th><th>Total Length</th><th>Head length</th><th>Eye length</th><th>Eye width</th><th>Anterior lobe (l)</th><th colspan="2">Pronotum Anterior Posterior lobe (w) lobe (l)</th><th>Posterior lobe (w)</th><th>Hemelytron length</th><th>Scape length</th><th>Interocular distance</th><th>Postocular lobe width</th><th>Abdomen width</th></tr><tr><th colspan="16"><b><i>Breviphysoderes</i> gen. nov.</b></th></tr></thead><tbody><tr><th><i>B. decora</i></th><td>♀</td><td>Mean (5)</td><td>9.19</td><td>2.02</td><td>0.40</td><td>1.06</td><td>0.98</td><td>2.18</td><td>1.08</td><td>2.96</td><td>5.41</td><td>0.55</td><td>0.59</td><td>0.88</td><td>3.76</td></tr><tr><th></th><td></td><td>SD</td><td>0.33</td><td>0.19</td><td>0.03</td><td>0.05</td><td>0.09</td><td>0.12</td><td>0.14</td><td>0.17</td><td>0.18</td><td>0.03</td><td>0.06</td><td>0.04</td><td>0.20</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.81</td><td>1.79</td><td>0.38</td><td>0.99</td><td>0.90</td><td>2.06</td><td>0.89</td><td>2.75</td><td>5.12</td><td>0.51</td><td>0.51</td><td>0.85</td><td>3.56</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.53</td><td>2.24</td><td>0.46</td><td>1.11</td><td>1.09</td><td>2.32</td><td>1.26</td><td>3.14</td><td>5.63</td><td>0.58</td><td>0.65</td><td>0.94</td><td>4.05</td></tr><tr><th><i>B. mjoebergi</i></th><td>♂</td><td>Mean (3)</td><td>7.91</td><td>1.62</td><td>0.37</td><td>0.96</td><td>0.89</td><td>2.02</td><td>1.11</td><td>2.74</td><td>4.41</td><td>0.53</td><td>0.56</td><td>0.83</td><td>3.31</td></tr><tr><th></th><td></td><td>SD</td><td>0.43</td><td>0.21</td><td>0.02</td><td>0.03</td><td>0.11</td><td>0.06</td><td>0.24</td><td>0.14</td><td>0.41</td><td>0.03</td><td>0.04</td><td>0.03</td><td>0.23</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.49</td><td>1.39</td><td>0.36</td><td>0.95</td><td>0.77</td><td>1.96</td><td>0.94</td><td>2.61</td><td>3.96</td><td>0.50</td><td>0.52</td><td>0.79</td><td>3.06</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.35</td><td>1.82</td><td>0.39</td><td>1.00</td><td>0.97</td><td>2.08</td><td>1.38</td><td>2.88</td><td>4.77</td><td>0.57</td><td>0.59</td><td>0.85</td><td>3.50</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>8.76</td><td>1.82</td><td>0.47</td><td>1.03</td><td>1.00</td><td>2.23</td><td>1.08</td><td>2.91</td><td>5.03</td><td>0.56</td><td>0.61</td><td>0.87</td><td>3.76</td></tr><tr><th></th><td></td><td>SD</td><td>0.69</td><td>0.12</td><td>0.23</td><td>0.06</td><td>0.15</td><td>0.23</td><td>0.14</td><td>0.22</td><td>0.52</td><td>0.05</td><td>0.03</td><td>0.03</td><td>0.40</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.91</td><td>1.68</td><td>0.32</td><td>0.98</td><td>0.87</td><td>1.97</td><td>0.97</td><td>2.63</td><td>4.36</td><td>0.51</td><td>0.57</td><td>0.84</td><td>3.31</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.23</td><td>2.08</td><td>0.38</td><td>1.07</td><td>1.50</td><td>3.18</td><td>1.24</td><td>3.35</td><td>6.20</td><td>0.69</td><td>0.65</td><td>0.93</td><td>4.07</td></tr><tr><th><i>B. vestita</i></th><td>♀</td><td>Mean (5)</td><td>9.13</td><td>1.84</td><td>0.33</td><td>1.01</td><td>1.06</td><td>2.29</td><td>1.09</td><td>2.89</td><td>5.46</td><td>0.60</td><td>0.63</td><td>0.88</td><td>3.95</td></tr><tr><th></th><td></td><td>SD</td><td>0.30</td><td>0.18</td><td>0.03</td><td>0.02</td><td>0.04</td><td>0.17</td><td>0.06</td><td>0.13</td><td>0.14</td><td>0.03</td><td>0.03</td><td>0.03</td><td>0.16</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.74</td><td>1.57</td><td>0.29</td><td>0.99</td><td>1.01</td><td>2.05</td><td>1.02</td><td>2.73</td><td>5.26</td><td>0.56</td><td>0.59</td><td>0.83</td><td>3.73</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.54</td><td>2.04</td><td>0.38</td><td>1.04</td><td>1.12</td><td>2.46</td><td>1.18</td><td>3.08</td><td>5.58</td><td>0.64</td><td>0.67</td><td>0.92</td><td>4.15</td></tr><tr><th><b><i>Macrophysoderes</i> gen. nov.</b></th><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>M. cirripilosa</i> gen. et sp. nov.</th><td>♂</td><td>Mean (16)</td><td>8.7</td><td>1.66</td><td>0.34</td><td>0.98</td><td>0.95</td><td>2.24</td><td>1.01</td><td>2.82</td><td>5.32</td><td>0.46</td><td>0.62</td><td>0.85</td><td>3.25</td></tr><tr><th></th><td></td><td>SD</td><td>0.66</td><td>0.12</td><td>0.03</td><td>0.06</td><td>0.09</td><td>0.19</td><td>0.14</td><td>0.21</td><td>0.45</td><td>0.04</td><td>0.06</td><td>0.03</td><td>0.24</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.8</td><td>1.45</td><td>0.29</td><td>0.84</td><td>0.81</td><td>1.88</td><td>0.77</td><td>2.4</td><td>4.71</td><td>0.4</td><td>0.56</td><td>0.79</td><td>2.72</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.85</td><td>1.99</td><td>0.39</td><td>1.05</td><td>1.14</td><td>2.62</td><td>1.32</td><td>3.16</td><td>6.05</td><td>0.53</td><td>0.75</td><td>0.91</td><td>3.62</td></tr><tr><th></th><td>♀</td><td>Mean (21)</td><td>9.04</td><td>1.67</td><td>0.35</td><td>1.01</td><td>0.94</td><td>2.23</td><td>1.05</td><td>2.88</td><td>5.61</td><td>0.48</td><td>0.65</td><td>0.89</td><td>3.7</td></tr><tr><th></th><td></td><td>SD</td><td>1.12</td><td>0.19</td><td>0.05</td><td>0.09</td><td>0.12</td><td>0.27</td><td>0.15</td><td>0.31</td><td>0.8</td><td>0.05</td><td>0.06</td><td>0.07</td><td>0.42</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.16</td><td>1.27</td><td>0.23</td><td>0.88</td><td>0.72</td><td>1.79</td><td>0.69</td><td>2.43</td><td>4.04</td><td>0.4</td><td>0.55</td><td>0.81</td><td>2.91</td></tr><tr><th></th><td></td><td>Maximum</td><td>11.01</td><td>1.97</td><td>0.46</td><td>1.17</td><td>1.15</td><td>2.79</td><td>1.28</td><td>3.47</td><td>7.04</td><td>0.58</td><td>0.79</td><td>1.04</td><td>4.43</td></tr><tr><th><i>M. elongata</i> gen. et sp. nov.</th><td>♂</td><td>Mean (5) SD Minimum Maximum</td><td>10.29 0.47 9.98 11.11</td><td>1.77 0.13 1.57 1.88</td><td>0.36 0.03 0.32 0.39</td><td>1.02 0.03 0.97 1.06</td><td>1.06 0.15 0.91 1.29</td><td>2.78 0.25 2.49 2.98</td><td>1.33 0.06 1.24 1.4</td><td>3.28 0.17 3.04 3.49</td><td>6.64 0.37 6.36 7.28</td><td>0.52 0.03 0.49 0.57</td><td>0.65 0.05 0.57 0.69</td><td>0.94 0.01 0.93 0.96</td><td>3.74 0.2 3.51 4.03</td></tr><tr><th></th><td>♀</td><td>Mean (4) SD Minimum Maximum</td><td>9.89 0.4 9.47 10.41</td><td>1.77 0.1 1.66 1.86</td><td>0.33 0.04 0.28 0.38</td><td>0.99 0.02 0.98 1.02</td><td>0.98 0.13 0.87 1.13</td><td>2.49 0.11 2.34 2.61</td><td>1.12 0.05 1.05 1.15</td><td>3.07 0.15 2.93 3.21</td><td>6.39 0.42 6.08 7</td><td>0.45 0.06 0.37 0.5</td><td>0.66 0 0.65 0.66</td><td>0.91 0.04 0.85 0.95</td><td>3.76 0.19 3.51 3.91</td></tr><tr><th><i>M. finisterre</i> gen. et sp. nov.</th><td>♂</td><td>Mean (5) SD Minimum Maximum</td><td>8.85 0.38 8.4 9.36</td><td>1.66 0.1 1.51 1.76</td><td>0.33 0.04 0.3 0.38</td><td>0.96 0.05 0.89 1.02</td><td>0.92 0.04 0.89 0.99</td><td>2.14 0.14 1.92 2.29</td><td>1.11 0.15 0.94 1.32</td><td>2.81 0.14 2.59 2.96</td><td>5.36 0.38 4.97 5.84</td><td>0.48 0.04 0.43 0.54</td><td>0.62 0.01 0.6 0.64</td><td>0.82 0.06 0.75 0.9</td><td>3.23 0.19 2.92 3.38</td></tr><tr><th></th><td>♀</td><td>Mean (5) SD Minimum Maximum</td><td>9.12 0.48 8.53 9.8</td><td>1.74 0.02 1.71 1.76</td><td>0.35 0.04 0.3 0.4</td><td>0.99 0.04 0.95 1.04</td><td>0.98 0.07 0.91 1.08</td><td>2.14 0.13 2.05 2.36</td><td>1.12 0.14 0.98 1.35</td><td>2.86 0.18 2.74 3.18</td><td>5.52 0.39 4.94 5.97</td><td>0.48 0.05 0.43 0.55</td><td>0.64 0.04 0.6 0.67</td><td>0.85 0.04 0.8 0.92</td><td>3.7 0.25 3.43 4.11</td></tr><tr><th><i>M. histrionica</i></th><td>♂</td><td>00018520</td><td>8.5</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>-</td><td>2.8</td><td>5</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th><i>M. grandis</i> gen. et sp. nov.</th><td>♂ ♀</td><td>00052314 00073625</td><td>11.58 12.66</td><td>1.59 2.02</td><td>0.48 0.5</td><td>1.31 1.33</td><td>1.03 1.33</td><td>2.65 2.82</td><td>1.64 1.69</td><td>3.74 4.03</td><td>7.71 8.21</td><td>0.75 0.75</td><td>0.62 0.67</td><td>1.01 1.01</td><td>4.28 4.86</td></tr><tr><th><i>M. modesta</i></th><td>♂ ♀</td><td>00069386 00069384</td><td>9.45 -1.82</td><td>1.94 2.13</td><td>0.35 0.36</td><td>1.06 1.28</td><td>1.08 1.24</td><td>2.14 2.56</td><td>1.27 1.52</td><td>2.95 3.71</td><td>5.49 7.37</td><td>0.52 0.58</td><td>0.59 0.73</td><td>0.88 0.96</td><td>3.46 4.47</td></tr><tr><th><i>M. monticola</i></th><td>♂ ♀</td><td>00069387 Mean (3) SD Minimum Maximum</td><td>10.34 9.88 0.72 9.11 10.53</td><td>1.81 1.98 0.11 1.89 2.11</td><td>0.29 0.35 0.01 0.34 0.37</td><td>1.06 1.08 0.06 1.02 1.13</td><td>0.96 0.93 0.09 0.84 1</td><td>2.29 2.32 0.2 2.1 2.48</td><td>1.37 1.26 0.22 1.06 1.49</td><td>3.36 3.24 0.29 2.93 3.51</td><td>6.35 5.99 0.3 5.65 6.21</td><td>0.49 0.47 0.02 0.44 0.49</td><td>0.63 0.66 0.04 0.62 0.69</td><td>0.91 0.93 0.02 0.91 0.96</td><td>4.19 4 0.34 3.68 4.36</td></tr><tr><th><b><i>Nanophysoderes</i> gen. nov.</b> <i>N. dentiscutum</i></th><td>♂</td><td>00037370</td><td>7.66</td><td>1.55</td><td>0.33</td><td>0.89</td><td>0.76</td><td>1.86</td><td>0.86</td><td>2.34</td><td>4.58</td><td>0.42</td><td>0.52</td><td>0.79</td><td>2.8</td></tr><tr><th><i>Paraphysoderes</i></th><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa. popeye</i> sp. nov.</th><td>♂</td><td>00073584</td><td>7.09</td><td>1.27</td><td>0.26</td><td>0.83</td><td>0.78</td><td>1.57</td><td>0.84</td><td>2.22</td><td>4.35</td><td>0.43</td><td>0.59</td><td>0.69</td><td>2.56</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>7.89</td><td>1.55</td><td>0.29</td><td>0.98</td><td>1</td><td>1.96</td><td>0.84</td><td>2.61</td><td>4.69</td><td>0.51</td><td>0.66</td><td>0.76</td><td>3.32</td></tr><tr><th></th><td></td><td>SD</td><td>0.44</td><td>0.21</td><td>0.02</td><td>0.02</td><td>0.06</td><td>0.18</td><td>0.07</td><td>0.14</td><td>0.23</td><td>0.07</td><td>0.03</td><td>0.01</td><td>0.14</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.47</td><td>1.25</td><td>0.27</td><td>0.95</td><td>0.95</td><td>1.8</td><td>0.76</td><td>2.5</td><td>4.46</td><td>0.42</td><td>0.63</td><td>0.75</td><td>3.17</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.41</td><td>1.83</td><td>0.33</td><td>1.01</td><td>1.1</td><td>2.25</td><td>0.93</td><td>2.77</td><td>5.02</td><td>0.61</td><td>0.69</td><td>0.78</td><td>3.54</td></tr><tr><th><i>Physoderes</i></th><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>P.anamalaiensis</i> sp. nov.</th><td>♂</td><td>Mean (5)</td><td>9.27</td><td>1.93</td><td>0.32</td><td>1.01</td><td>1.33</td><td>2.85</td><td>0.87</td><td>2.83</td><td>5.44</td><td>0.49</td><td>0.65</td><td>0.85</td><td>3.56</td></tr><tr><th></th><td></td><td>SD</td><td>0.36</td><td>0.04</td><td>0.02</td><td>0.03</td><td>0.09</td><td>0.29</td><td>0.11</td><td>0.16</td><td>0.19</td><td>0.04</td><td>0.01</td><td>0.03</td><td>0.13</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.91</td><td>1.87</td><td>0.28</td><td>0.98</td><td>1.23</td><td>2.45</td><td>0.73</td><td>2.64</td><td>5.17</td><td>0.42</td><td>0.64</td><td>0.82</td><td>3.41</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.82</td><td>1.97</td><td>0.35</td><td>1.05</td><td>1.46</td><td>3.1</td><td>1.02</td><td>2.96</td><td>5.62</td><td>0.53</td><td>0.67</td><td>0.89</td><td>3.74</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>9.13</td><td>1.97</td><td>0.33</td><td>0.97</td><td>1.13</td><td>2.51</td><td>0.96</td><td>2.84</td><td>5.24</td><td>0.49</td><td>0.63</td><td>0.87</td><td>3.77</td></tr><tr><th></th><td></td><td>SD</td><td>0.27</td><td>0.12</td><td>0.03</td><td>0.04</td><td>0.05</td><td>0.15</td><td>0.15</td><td>0.09</td><td>0.18</td><td>0.03</td><td>0.08</td><td>0.02</td><td>0.19</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.92</td><td>1.85</td><td>0.3</td><td>0.94</td><td>1.07</td><td>2.31</td><td>0.77</td><td>2.75</td><td>5.03</td><td>0.47</td><td>0.54</td><td>0.85</td><td>3.55</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.59</td><td>2.14</td><td>0.36</td><td>1.03</td><td>1.17</td><td>2.72</td><td>1.1</td><td>2.99</td><td>5.48</td><td>0.53</td><td>0.74</td><td>0.91</td><td>4.07</td></tr><tr><th><i>P. azrael</i></th><td>♂</td><td>Mean (5)</td><td>8.58</td><td>1.63</td><td>0.3</td><td>0.89</td><td>0.97</td><td>2.58</td><td>0.94</td><td>2.75</td><td>5.29</td><td>0.39</td><td>0.59</td><td>0.85</td><td>3.1</td></tr><tr><th></th><td></td><td>SD</td><td>0.16</td><td>0.08</td><td>0.02</td><td>0.02</td><td>0.06</td><td>0.18</td><td>0.07</td><td>0.11</td><td>0.15</td><td>0.02</td><td>0.03</td><td>0.03</td><td>0.13</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.39</td><td>1.52</td><td>0.27</td><td>0.86</td><td>0.9</td><td>2.33</td><td>0.83</td><td>2.6</td><td>5.11</td><td>0.36</td><td>0.55</td><td>0.82</td><td>2.94</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.76</td><td>1.7</td><td>0.32</td><td>0.91</td><td>1.05</td><td>2.71</td><td>1</td><td>2.87</td><td>5.49</td><td>0.41</td><td>0.62</td><td>0.88</td><td>3.24</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>8.61</td><td>1.61</td><td>0.29</td><td>0.89</td><td>0.86</td><td>2.13</td><td>0.92</td><td>2.68</td><td>5.41</td><td>0.42</td><td>0.6</td><td>0.86</td><td>3.21</td></tr><tr><th></th><td></td><td>SD</td><td>0.27</td><td>0.06</td><td>0.02</td><td>0.04</td><td>0.04</td><td>0.07</td><td>0.04</td><td>0.09</td><td>0.19</td><td>0.05</td><td>0.03</td><td>0.02</td><td>0.06</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.14</td><td>1.51</td><td>0.26</td><td>0.83</td><td>0.8</td><td>2.04</td><td>0.85</td><td>2.55</td><td>5.13</td><td>0.36</td><td>0.55</td><td>0.84</td><td>3.13</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.83</td><td>1.67</td><td>0.31</td><td>0.93</td><td>0.91</td><td>2.22</td><td>0.96</td><td>2.77</td><td>5.64</td><td>0.49</td><td>0.62</td><td>0.88</td><td>3.26</td></tr><tr><th><i>P. brevipennis</i> sp. nov.</th><td>♂</td><td>Mean (5)</td><td>6.61</td><td>1.77</td><td>0.3</td><td>0.93</td><td>1.28</td><td>2.98</td><td>0.78</td><td>2.6</td><td>2.72</td><td>0.49</td><td>0.6</td><td>0.87</td><td>3.44</td></tr><tr><th></th><td></td><td>SD</td><td>0.35</td><td>0.14</td><td>0.03</td><td>0.04</td><td>0.1</td><td>0.2</td><td>0.05</td><td>0.14</td><td>0.27</td><td>0.03</td><td>0.05</td><td>0.04</td><td>0.24</td></tr><tr><th></th><td></td><td>Minimum</td><td>6.08</td><td>1.67</td><td>0.27</td><td>0.88</td><td>1.21</td><td>2.76</td><td>0.71</td><td>2.47</td><td>2.41</td><td>0.46</td><td>0.53</td><td>0.81</td><td>3.19</td></tr><tr><th></th><td></td><td>Maximum</td><td>7.07</td><td>2.01</td><td>0.34</td><td>0.98</td><td>1.44</td><td>3.25</td><td>0.82</td><td>2.8</td><td>3.05</td><td>0.53</td><td>0.65</td><td>0.91</td><td>3.83</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>6.53</td><td>1.69</td><td>0.31</td><td>0.96</td><td>1.11</td><td>2.49</td><td>0.81</td><td>2.54</td><td>2.71</td><td>0.49</td><td>0.64</td><td>0.89</td><td>3.8</td></tr><tr><th></th><td></td><td>SD</td><td>0.17</td><td>0.15</td><td>0.04</td><td>0.04</td><td>0.09</td><td>0.18</td><td>0.08</td><td>0.13</td><td>0.27</td><td>0.03</td><td>0.03</td><td>0.03</td><td>0.32</td></tr><tr><th></th><td></td><td>Minimum</td><td>6.29</td><td>1.49</td><td>0.25</td><td>0.91</td><td>0.98</td><td>2.19</td><td>0.73</td><td>2.31</td><td>2.31</td><td>0.46</td><td>0.59</td><td>0.84</td><td>3.42</td></tr><tr><th></th><td></td><td>Maximum</td><td>6.73</td><td>1.87</td><td>0.34</td><td>1.01</td><td>1.2</td><td>2.65</td><td>0.91</td><td>2.66</td><td>2.97</td><td>0.54</td><td>0.68</td><td>0.93</td><td>4.14</td></tr><tr><th><i>P. curculionis</i></th><td>♂</td><td>Mean (7)</td><td>7.64</td><td>1.56</td><td>0.28</td><td>0.86</td><td>1.02</td><td>2.53</td><td>0.78</td><td>2.59</td><td>4.48</td><td>0.37</td><td>0.59</td><td>0.81</td><td>3</td></tr><tr><th></th><td></td><td>SD</td><td>0.21</td><td>0.07</td><td>0.01</td><td>0.02</td><td>0.06</td><td>0.15</td><td>0.1</td><td>0.08</td><td>0.18</td><td>0.06</td><td>0.03</td><td>0.02</td><td>0.21</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.37</td><td>1.46</td><td>0.27</td><td>0.82</td><td>0.94</td><td>2.37</td><td>0.64</td><td>2.5</td><td>4.15</td><td>0.27</td><td>0.54</td><td>0.78</td><td>2.68</td></tr><tr><th></th><td></td><td>Maximum</td><td>7.9</td><td>1.67</td><td>0.29</td><td>0.88</td><td>1.11</td><td>2.74</td><td>0.93</td><td>2.69</td><td>4.63</td><td>0.44</td><td>0.65</td><td>0.83</td><td>3.35</td></tr><tr><th></th><td>♀</td><td>Mean (9)</td><td>7.47</td><td>1.52</td><td>0.27</td><td>0.86</td><td>0.91</td><td>2.19</td><td>0.86</td><td>2.54</td><td>4.46</td><td>0.39</td><td>0.58</td><td>0.82</td><td>3.14</td></tr><tr><th></th><td></td><td>SD</td><td>0.17</td><td>0.07</td><td>0.03</td><td>0.04</td><td>0.08</td><td>0.1</td><td>0.08</td><td>0.09</td><td>0.16</td><td>0.03</td><td>0.03</td><td>0.03</td><td>0.26</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.23</td><td>1.38</td><td>0.23</td><td>0.82</td><td>0.79</td><td>2.07</td><td>0.72</td><td>2.46</td><td>4.12</td><td>0.36</td><td>0.53</td><td>0.77</td><td>2.5</td></tr><tr><th></th><td></td><td>Maximum</td><td>7.68</td><td>1.61</td><td>0.32</td><td>0.92</td><td>1.07</td><td>2.36</td><td>1.01</td><td>2.7</td><td>4.68</td><td>0.44</td><td>0.63</td><td>0.85</td><td>3.39</td></tr><tr><th><i>P. fuliginosa</i></th><td>♂</td><td>Mean (5)</td><td>10.47</td><td>2.01</td><td>0.34</td><td>0.99</td><td>1.45</td><td>3.42</td><td>1.15</td><td>3.31</td><td>6.24</td><td>0.55</td><td>0.65</td><td>0.94</td><td>3.82</td></tr><tr><th></th><td></td><td>SD</td><td>0.54</td><td>0.08</td><td>0.03</td><td>0.05</td><td>0.2</td><td>0.54</td><td>0.09</td><td>0.23</td><td>0.36</td><td>0.02</td><td>0.07</td><td>0.05</td><td>0.28</td></tr><tr><th></th><td></td><td>Minimum</td><td>9.84</td><td>1.89</td><td>0.29</td><td>0.93</td><td>1.22</td><td>2.85</td><td>1.06</td><td>3.1</td><td>5.84</td><td>0.52</td><td>0.56</td><td>0.89</td><td>3.54</td></tr><tr><th></th><td></td><td>Maximum</td><td>11.03</td><td>2.08</td><td>0.36</td><td>1.04</td><td>1.69</td><td>4</td><td>1.28</td><td>3.63</td><td>6.56</td><td>0.57</td><td>0.74</td><td>1.01</td><td>4.19</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>10.14</td><td>2</td><td>0.38</td><td>1.01</td><td>1</td><td>2.39</td><td>1.34</td><td>3.2</td><td>6.2</td><td>0.5</td><td>0.64</td><td>0.92</td><td>4.04</td></tr><tr><th></th><td></td><td>SD</td><td>0.49</td><td>0.05</td><td>0.04</td><td>0.07</td><td>0.08</td><td>0.18</td><td>0.12</td><td>0.15</td><td>0.37</td><td>0.03</td><td>0.06</td><td>0.04</td><td>0.26</td></tr><tr><th></th><td></td><td>Minimum</td><td>9.59</td><td>1.92</td><td>0.33</td><td>0.93</td><td>0.9</td><td>2.19</td><td>1.22</td><td>3</td><td>5.72</td><td>0.49</td><td>0.59</td><td>0.88</td><td>3.8</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.89</td><td>2.03</td><td>0.44</td><td>1.12</td><td>1.1</td><td>2.6</td><td>1.54</td><td>3.4</td><td>6.68</td><td>0.55</td><td>0.74</td><td>0.98</td><td>4.47</td></tr><tr><th><i>P.minime</i> sp. nov.</th><td>♂</td><td>Mean (5)</td><td>8.64</td><td>2.01</td><td>0.31</td><td>0.89</td><td>1.23</td><td>2.83</td><td>0.98</td><td>2.74</td><td>4.72</td><td>0.52</td><td>0.61</td><td>0.86</td><td>3.3</td></tr><tr><th></th><td></td><td>SD</td><td>0.28</td><td>0.08</td><td>0.01</td><td>0.01</td><td>0.05</td><td>0.09</td><td>0.06</td><td>0.08</td><td>0.23</td><td>0.03</td><td>0.03</td><td>0.01</td><td>0.1</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.31</td><td>1.9</td><td>0.29</td><td>0.88</td><td>1.18</td><td>2.73</td><td>0.93</td><td>2.64</td><td>4.54</td><td>0.49</td><td>0.55</td><td>0.84</td><td>3.19</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.03</td><td>2.12</td><td>0.32</td><td>0.9</td><td>1.28</td><td>2.97</td><td>1.07</td><td>2.82</td><td>5.13</td><td>0.56</td><td>0.62</td><td>0.87</td><td>3.46</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>8.29</td><td>1.88</td><td>0.3</td><td>0.87</td><td>0.89</td><td>2.07</td><td>1.04</td><td>2.6</td><td>4.77</td><td>0.49</td><td>0.57</td><td>0.87</td><td>3.58</td></tr><tr><th></th><td></td><td>SD</td><td>0.16</td><td>0.14</td><td>0.05</td><td>0.06</td><td>0.06</td><td>0.08</td><td>0.09</td><td>0.1</td><td>0.26</td><td>0.02</td><td>0.09</td><td>0.04</td><td>0.16</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.1</td><td>1.7</td><td>0.25</td><td>0.79</td><td>0.81</td><td>1.98</td><td>0.96</td><td>2.48</td><td>4.48</td><td>0.47</td><td>0.49</td><td>0.82</td><td>3.31</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.54</td><td>2.05</td><td>0.38</td><td>0.94</td><td>0.98</td><td>2.15</td><td>1.19</td><td>2.7</td><td>5.11</td><td>0.51</td><td>0.69</td><td>0.94</td><td>3.71</td></tr><tr><th><i>P. muluensis</i> sp. nov.</th><td>♂</td><td>Mean (4)</td><td>7.35</td><td>1.73</td><td>0.3</td><td>0.91</td><td>0.9</td><td>1.95</td><td>0.95</td><td>2.43</td><td>3.96</td><td>0.49</td><td>0.56</td><td>0.82</td><td>2.83</td></tr><tr><th></th><td></td><td>SD</td><td>0.27</td><td>0.18</td><td>0.03</td><td>0.06</td><td>0.12</td><td>0.11</td><td>0.03</td><td>0.13</td><td>0.3</td><td>0.03</td><td>0.03</td><td>0.09</td><td>0.18</td></tr><tr><th></th><td></td><td>Minimum</td><td>6.99</td><td>1.46</td><td>0.27</td><td>0.84</td><td>0.77</td><td>1.82</td><td>0.93</td><td>2.26</td><td>3.61</td><td>0.46</td><td>0.53</td><td>0.74</td><td>2.61</td></tr><tr><th></th><td></td><td>Maximum</td><td>7.59</td><td>1.87</td><td>0.33</td><td>0.96</td><td>1.04</td><td>2.08</td><td>0.99</td><td>2.56</td><td>4.35</td><td>0.53</td><td>0.6</td><td>0.93</td><td>3.01</td></tr><tr><th></th><td>♀</td><td>Mean (3)</td><td>7.92</td><td>1.75</td><td>0.3</td><td>0.95</td><td>1</td><td>2.05</td><td>0.95</td><td>2.59</td><td>4.32</td><td>0.48</td><td>0.64</td><td>0.85</td><td>3.34</td></tr><tr><th></th><td></td><td>SD</td><td>0.27</td><td>0.07</td><td>0.03</td><td>0.05</td><td>0.05</td><td>0.09</td><td>0.09</td><td>0.04</td><td>0.26</td><td>0.05</td><td>0.06</td><td>0.03</td><td>0.08</td></tr><tr><th></th><td></td><td>Minimum</td><td>7.67</td><td>1.72</td><td>0.27</td><td>0.89</td><td>0.95</td><td>1.98</td><td>0.9</td><td>2.55</td><td>4.02</td><td>0.45</td><td>0.57</td><td>0.81</td><td>3.28</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.21</td><td>1.83</td><td>0.32</td><td>0.99</td><td>1.06</td><td>2.15</td><td>1.06</td><td>2.62</td><td>4.5</td><td>0.54</td><td>0.69</td><td>0.87</td><td>3.43</td></tr><tr><th><i>P. mysorensis</i> sp. nov.</th><td>♂</td><td>Mean (3)</td><td>10.82</td><td>2.05</td><td>0.36</td><td>1.07</td><td>1.62</td><td>3.69</td><td>1.12</td><td>3.54</td><td>6.43</td><td>0.58</td><td>0.72</td><td>0.93</td><td>4.14</td></tr><tr><th></th><td></td><td>SD</td><td>0.14</td><td>0.11</td><td>0.08</td><td>0.05</td><td>0.1</td><td>0.26</td><td>0.1</td><td>0.12</td><td>0.21</td><td>0</td><td>0.01</td><td>0.04</td><td>0.32</td></tr><tr><th></th><td></td><td>Minimum</td><td>10.69</td><td>1.92</td><td>0.27</td><td>1.03</td><td>1.51</td><td>3.44</td><td>1.01</td><td>3.41</td><td>6.3</td><td>0.57</td><td>0.71</td><td>0.89</td><td>3.92</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.96</td><td>2.14</td><td>0.42</td><td>1.12</td><td>1.71</td><td>3.95</td><td>1.21</td><td>3.63</td><td>6.67</td><td>0.58</td><td>0.73</td><td>0.97</td><td>4.37</td></tr><tr><th></th><td>♀</td><td>Mean (2)</td><td>10.7</td><td>2.08</td><td>0.34</td><td>1.08</td><td>1.45</td><td>3.11</td><td>1.17</td><td>3.56</td><td>6.48</td><td>0.58</td><td>0.66</td><td>1</td><td>4.3</td></tr><tr><th></th><td></td><td>SD</td><td>0.25</td><td>0.11</td><td>0.04</td><td>0.06</td><td>0.14</td><td>0.08</td><td>0.17</td><td>0.07</td><td>0.05</td><td>0.03</td><td>0.11</td><td>0.01</td><td>NA</td></tr><tr><th></th><td></td><td>Minimum</td><td>10.52</td><td>2</td><td>0.32</td><td>1.04</td><td>1.35</td><td>3.05</td><td>1.05</td><td>3.51</td><td>6.45</td><td>0.56</td><td>0.58</td><td>1</td><td>4.3</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.88</td><td>2.15</td><td>0.36</td><td>1.12</td><td>1.56</td><td>3.16</td><td>1.29</td><td>3.61</td><td>6.52</td><td>0.61</td><td>0.74</td><td>1.01</td><td>4.3</td></tr><tr><th><i>P.nigripennis</i> sp. nov.</th><td>♂</td><td>Mean (5)</td><td>9.12</td><td>1.89</td><td>0.34</td><td>1.02</td><td>0.9</td><td>2.17</td><td>1.24</td><td>2.95</td><td>5.27</td><td>0.53</td><td>0.59</td><td>0.85</td><td>3.42</td></tr><tr><th></th><td></td><td>SD</td><td>0.29</td><td>0.08</td><td>0.03</td><td>0.05</td><td>0.07</td><td>0.09</td><td>0.07</td><td>0.1</td><td>0.16</td><td>0.07</td><td>0.05</td><td>0.04</td><td>0.22</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.76</td><td>1.77</td><td>0.29</td><td>0.96</td><td>0.83</td><td>2.04</td><td>1.13</td><td>2.82</td><td>5.09</td><td>0.46</td><td>0.53</td><td>0.79</td><td>3.16</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.48</td><td>1.95</td><td>0.36</td><td>1.09</td><td>1</td><td>2.28</td><td>1.32</td><td>3.07</td><td>5.45</td><td>0.65</td><td>0.66</td><td>0.89</td><td>3.72</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>10.05</td><td>1.9</td><td>0.35</td><td>1.13</td><td>0.94</td><td>2.3</td><td>1.4</td><td>3.32</td><td>6.07</td><td>0.6</td><td>0.64</td><td>0.92</td><td>4.17</td></tr><tr><th></th><td></td><td>SD</td><td>0.41</td><td>0.04</td><td>0.02</td><td>0.02</td><td>0.09</td><td>0.08</td><td>0.1</td><td>0.11</td><td>0.47</td><td>0.09</td><td>0.03</td><td>0.02</td><td>0.14</td></tr><tr><th></th><td></td><td>Minimum</td><td>9.6</td><td>1.88</td><td>0.33</td><td>1.1</td><td>0.83</td><td>2.22</td><td>1.32</td><td>3.2</td><td>5.65</td><td>0.51</td><td>0.62</td><td>0.89</td><td>4.05</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.65</td><td>1.97</td><td>0.37</td><td>1.16</td><td>1.05</td><td>2.4</td><td>1.56</td><td>3.49</td><td>6.8</td><td>0.71</td><td>0.67</td><td>0.93</td><td>4.41</td></tr><tr><th><i>P. nigroalbus</i></th><td>♀</td><td>00040566</td><td>9.74</td><td>1.88</td><td>0.29</td><td>1</td><td>1.03</td><td>2.24</td><td>1.17</td><td>2.95</td><td>6.01</td><td>0.41</td><td>0.66</td><td>0.94</td><td>3.66</td></tr><tr><th><i>P. notata</i></th><td>♂</td><td>Mean (5)</td><td>9.94</td><td>1.81</td><td>0.32</td><td>1.02</td><td>1.24</td><td>3.17</td><td>1.25</td><td>3.14</td><td>6.08</td><td>0.45</td><td>0.63</td><td>0.91</td><td>3.61</td></tr><tr><th></th><td></td><td>SD</td><td>0.3</td><td>0.12</td><td>0.02</td><td>0.04</td><td>0.09</td><td>0.26</td><td>0.09</td><td>0.08</td><td>0.2</td><td>0.04</td><td>0.04</td><td>0.06</td><td>0.24</td></tr><tr><th></th><td></td><td>Minimum</td><td>9.44</td><td>1.7</td><td>0.29</td><td>0.97</td><td>1.12</td><td>2.89</td><td>1.17</td><td>3.06</td><td>5.75</td><td>0.41</td><td>0.57</td><td>0.84</td><td>3.34</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.22</td><td>1.99</td><td>0.34</td><td>1.08</td><td>1.35</td><td>3.51</td><td>1.4</td><td>3.26</td><td>6.3</td><td>0.51</td><td>0.66</td><td>1.01</td><td>3.87</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>9.94</td><td>1.8</td><td>0.32</td><td>1.05</td><td>0.96</td><td>2.45</td><td>1.31</td><td>3.17</td><td>6.28</td><td>0.46</td><td>0.66</td><td>0.93</td><td>3.73</td></tr><tr><th></th><td></td><td>SD</td><td>0.31</td><td>0.15</td><td>0.03</td><td>0.04</td><td>0.1</td><td>0.09</td><td>0.18</td><td>0.15</td><td>0.25</td><td>0.04</td><td>0.04</td><td>0.04</td><td>0.23</td></tr><tr><th></th><td></td><td>Minimum</td><td>9.54</td><td>1.62</td><td>0.3</td><td>1.01</td><td>0.84</td><td>2.35</td><td>1.06</td><td>3</td><td>5.93</td><td>0.42</td><td>0.62</td><td>0.88</td><td>3.38</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.3</td><td>1.99</td><td>0.37</td><td>1.1</td><td>1.12</td><td>2.57</td><td>1.51</td><td>3.33</td><td>6.51</td><td>0.51</td><td>0.73</td><td>0.98</td><td>3.94</td></tr><tr><th><i>P.ractepilosa</i> sp. nov.</th><td>♂</td><td>Mean (2)</td><td>8.93</td><td>1.86</td><td>0.37</td><td>0.86</td><td>0.9</td><td>2.13</td><td>1</td><td>2.74</td><td>5.51</td><td>0.47</td><td>0.5</td><td>0.85</td><td>3.39</td></tr><tr><th></th><td></td><td>SD</td><td>0.49</td><td>0.15</td><td>0.03</td><td>0</td><td>0.17</td><td>0.12</td><td>0.3</td><td>0.14</td><td>0.6</td><td>0.05</td><td>0.14</td><td>0.07</td><td>0.25</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.59</td><td>1.75</td><td>0.34</td><td>0.86</td><td>0.77</td><td>2.04</td><td>0.79</td><td>2.64</td><td>5.09</td><td>0.44</td><td>0.4</td><td>0.8</td><td>3.21</td></tr><tr><th></th><td></td><td>Maximum</td><td>9.27</td><td>1.96</td><td>0.39</td><td>0.86</td><td>1.02</td><td>2.21</td><td>1.21</td><td>2.83</td><td>5.93</td><td>0.5</td><td>0.6</td><td>0.9</td><td>3.57</td></tr><tr><th></th><td>♀</td><td>Mean (5)</td><td>9.19</td><td>1.99</td><td>0.37</td><td>0.93</td><td>0.9</td><td>2.23</td><td>1.1</td><td>2.99</td><td>5.47</td><td>0.51</td><td>0.55</td><td>0.84</td><td>3.86</td></tr><tr><th></th><td></td><td>SD</td><td>0.67</td><td>0.1</td><td>0.02</td><td>0.03</td><td>0.06</td><td>0.13</td><td>0.12</td><td>0.21</td><td>0.47</td><td>0.04</td><td>0.07</td><td>0.01</td><td>0.26</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.32</td><td>1.83</td><td>0.34</td><td>0.89</td><td>0.82</td><td>2.02</td><td>0.97</td><td>2.66</td><td>4.89</td><td>0.44</td><td>0.43</td><td>0.81</td><td>3.44</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.19</td><td>2.08</td><td>0.4</td><td>0.97</td><td>0.97</td><td>2.37</td><td>1.27</td><td>3.22</td><td>6.2</td><td>0.56</td><td>0.6</td><td>0.85</td><td>4.1</td></tr><tr><th><i>P. tricolor</i> sp. nov.</th><td>♂</td><td>Mean (2)</td><td>8.66</td><td>1.58</td><td>0.29</td><td>0.91</td><td>0.99</td><td>2.47</td><td>1.17</td><td>2.65</td><td>5.3</td><td>0.42</td><td>0.54</td><td>0.84</td><td>2.92</td></tr><tr><th></th><td></td><td>SD</td><td>0.16</td><td>0.04</td><td>0.01</td><td>0.05</td><td>0.09</td><td>0.07</td><td>0.01</td><td>0.05</td><td>0.05</td><td>0</td><td>0.03</td><td>0.02</td><td>0.17</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.55</td><td>1.56</td><td>0.29</td><td>0.88</td><td>0.93</td><td>2.42</td><td>1.16</td><td>2.61</td><td>5.26</td><td>0.42</td><td>0.51</td><td>0.82</td><td>2.8</td></tr><tr><th></th><td></td><td>Maximum</td><td>8.77</td><td>1.61</td><td>0.3</td><td>0.95</td><td>1.05</td><td>2.52</td><td>1.17</td><td>2.68</td><td>5.33</td><td>0.42</td><td>0.56</td><td>0.86</td><td>3.04</td></tr><tr><th></th><td>♀</td><td>Mean (3)</td><td>9.33</td><td>1.7</td><td>0.31</td><td>0.92</td><td>0.9</td><td>2.17</td><td>1.13</td><td>2.77</td><td>5.6</td><td>0.39</td><td>0.6</td><td>0.85</td><td>3.2</td></tr><tr><th></th><td></td><td>SD</td><td>0.74</td><td>0.03</td><td>0.02</td><td>0.01</td><td>0.02</td><td>0.09</td><td>0.13</td><td>0.1</td><td>0.23</td><td>0.04</td><td>0.02</td><td>0.04</td><td>0.19</td></tr><tr><th></th><td></td><td>Minimum</td><td>8.7</td><td>1.67</td><td>0.29</td><td>0.91</td><td>0.88</td><td>2.07</td><td>1.02</td><td>2.66</td><td>5.44</td><td>0.35</td><td>0.58</td><td>0.8</td><td>2.98</td></tr><tr><th></th><td></td><td>Maximum</td><td>10.15</td><td>1.73</td><td>0.32</td><td>0.93</td><td>0.92</td><td>2.25</td><td>1.28</td><td>2.86</td><td>5.76</td><td>0.42</td><td>0.61</td><td>0.87</td><td>3.34</td></tr></tbody></table>
Complexity and Quality Dockerfile Reference Dataset
<p>A manually curated dataset comprising 60 docker files. These are taken from the ten most popular images of Docker-Hub, the Docker-library provided by Docker and various GitHub repositories. These files have been classified according to their complexity and quality.</p>
Becoming LTi - Dataset : Reference files and Software Containers
<p><strong>Dataset from article</strong> : Distinct waves from the hemogenic endothelium give rise to layered Lymphoid Tissue Inducer cell ontogeny</p> <p><strong>Summary:</strong> During embryogenesis Lymphoid Tissue Inducer (LTi) cells are essential for lymph node organogenesis. These cells are part of the Innate Lymphoid Cell (ILC) family. Although their earliest embryonic hematopoietic origin is unclear, other innate immune cells were shown to be derived from both early hemogenic endothelium in the yolk-sac as well as the aorta-gonad-mesonephros. A proper model to discriminate between these locations was unavailable. In this study, using a new Cxcr4-CreERT2 lineage tracing model, we identify a major contribution from embryonic hemogenic endothelium, but not yolk-sac, towards the LTi progenitors. Conversely, embryonic LTi cells are replaced by hematopoietic stem cell derived cells in adult. We further show that within the fetal liver common lymphoid progenitors differentiate into highly dynamic alpha-lymphoid precursor cells, which at this embryonic stage preferentially mature into LTi precursors and establish their functional LTi cell identity only after reaching the periphery.</p> <p><strong>Data </strong>:</p> <p>1. SPlab_BecomingLTi_01_Reference.tar.gz : Reference files used for the data analysis.</p> <p>2. SPlab_BecomingLTi_02_containers.tar.gz : Singularity and Docker images used for the data analysis.</p>
Simulated read data analysed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph"
<p>Simulated read data analyzed in "Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph".</p> <p><strong>1) Human sequence data</strong></p> <p><strong>HO_chr11_50bp_sliding_window*fq.gz:</strong><br> All possible 50 bp reads overlapping chromosome 11 SNPs in the Human Origins dataset. Files with the word "alternate" in their filename carry the alternate allele, otherwise, they carry the reference allele. Deamination has been added into these simulated reads using gargammel (Renaud 2016) based on empirically estimated post-mortem damage in a dataset of 102 ancient genomes (Allentoft et al., 2015).</p> <p><strong>2) microbial data</strong></p> <p><strong>simulation_*_s.fq.gz:</strong><br> Simulated microbial read data from a set of microbial reference genomes identified in the ancient Clovis genome (Rasmussen 2014), using gargammel.</p>
Individual Edit Histories of All References in the English Wikipedia
<p><strong>This dataset includes the historical versions of all individual references per article in the English Wikipedia. Each reference object also contains information about its original creating editor, editors implementing changes to it, and timestamps of all actions (creations, modifications, deletions, and reinsertions) that were applied to the reference. Each historical version of a reference is represented as a list of tokens </strong> <strong>(≈ words)</strong><strong>, where each token has an individual creator and change history.</strong></p> <p>The extraction process was meticulously vetted through crowdsourcing evaluations, assuring very high accuracy in contrast to standard textual difference algorithms. The dataset includes references that were created with the "<ref>" tag until June 2019. It contains 55,503,998 references with 164,530,374 actions. These references were found in 4,690,046 Wikipedia articles.</p> <p>The dataset consists of JSON files where each article's page ID (here: article_id) is used as a file name. Each file is represented as a list of “References”. Each reference is a dictionary with the following keys:</p> <ul> <li>"<strong>first_rev_id</strong>" type: Integer, first revision where the reference was inserted (the same value is represented in “ins” as the first element of the list and in "rev_id" of the first element in the "change_sequence"),</li> <li>"<strong>first_hash_id</strong>" type: String, the hash value of the first version of token_id (from WikiWho<a href="#wikiwholine"><sup>1</sup></a>, see below) list of the reference (the same value is represented as "hash_id" of the first element in the "change_sequence"),</li> <li>"<strong>first_editor_id</strong>" type: String, user_id or IP address of the first revision where the reference was inserted (the same value is represented as "editor_id" of the first element in the "change_sequence",</li> <li>"<strong>deleted</strong>" type: Boolean, an indicator if the reference exists in the last available revision,</li> <li>"<strong>ins</strong>" type: List of Integers, list of revisions where the reference was inserted (includes the first revision mentioned as "first_rev_id"),</li> <li>"<strong>ins_editor</strong>" type: List of Strings, list of user_id or IP addresses of editors where the reference was inserted (includes the first user mentioned as "first_editor_id"),</li> <li>"<strong>del</strong>" type: List of Integers, list of revisions where the reference was deleted from the article or reference was modified in a way that less than 25% of tokens remained,</li> <li>"<strong>del_editor</strong>“ type: List of Strings, list of user_id or IP addresses of editors where the reference was deleted or reference was modified in a way that less than 25% of tokens remained,</li> <li>"<strong>modif</strong>" type: List of Integers, list of revisions where the reference was modified, or reinserted with modification,</li> <li>"<strong>hashes</strong>": type: List of Strings, list of hash values of all versions of references,</li> <li>"<strong>first_rev_time</strong>": type: DateTime, the timestamp when the reference was created (the same value is represented in "ins_time” as the first element of the list and in "time" of the first element in the "change_sequence"),</li> <li>"<strong>ins_time</strong>" type: List of DateTime, list of timestamps when the reference was inserted or reinserted,</li> <li>"<strong>del_time</strong>" type: List of DateTime, list of timestamps when the reference was deleted,</li> <li>"<strong>change_sequence</strong>" type: List of dictionaries, with information about tokens, editors and revisions where the reference was modified (the first element representing the first revision where the reference was inserted), where: <ul> <li>"<strong>hash_id</strong>" type: String, the hash value of the token_id (WikiWho<a href="#wikiwholine"><sup>1</sup></a>) list of the reference version,</li> <li>"<strong>rev_id</strong>" type: Integer, the revision number of the particular version of the reference,</li> <li>"<strong>editor_id</strong>" type: String, user_id or IP address of the revision editor,</li> <li>"<strong>time</strong>" type: DateTime, the timestamp when of this particular version of the reference,</li> <li>"<strong>tokens</strong>" type: List of Strings, ordered list of tokens (created by WikiWho<a href="#wikiwholine"><sup>1</sup></a>) that represents the particular version of the reference (the list has the same length as "token_editors"),</li> <li>"<strong>token_editors</strong>" type: List of Strings, ordered list of user_ids or IP addresses of editors that were first who added the corresponding token (see "tokens") to Wikipedia article.</li> </ul> </li> </ul> <p><sup>1</sup> WikiWho is a text mining algorithm to extract changes to tokens from Wikipedia revisions. Each token is assigned a unique ID. More information: <a href="https://www.wikiwho.net/#technical_details">https://www.wikiwho.net/#technical_details</a></p> <p>GitHub Repository with Python example code on how to process data and extract document identifiers: <a href="https://github.com/gesiscss/wikipedia_references">https://github.com/gesiscss/wikipedia_references</a></p> <p>To run the code at GESIS Notebook follow the link: <a href="https://notebooks.gesis.org/binder/v2/gh/gesiscss/wikipedia_references/master">https://notebooks.gesis.org/binder/v2/gh/gesiscss/wikipedia_references/master</a></p>
Supplementary data (low-diversity metagenome and reference database completeness) to accompany "phyloFlash – Rapid SSU rRNA profiling and targeted assembly from metagenomes"
<p>Comparison of phyloFlash and Matam on low-diversity platyhelminth metagenome, showing effect of reference database completeness on results. </p> <p>The phyloFlash software is available from https://github.com/HRGV/phyloFlash. Examples were generated with phyloFlash v3.3b.</p>
Reference Climate (1971-2005) and RCP 8.5 scenario (2010-2100) of Destra sele for SWAP simulation
<p>The database refers to the weather files for the simulation run of SWAP model (Kroes et al., 2017) in the Destra Sele area (Regione Campania, southern Italy) under Reference Climate (RC, 1971-2005) and future climate scenario (RCP 8.5, 2010-2100).</p> <p>The future climate scenarios were obtained by using the high resolution regional climate model (RCM) COSMO-CLM (Rockel et al., 2008), with a configuration employing a spatial resolution of 0.0715°(about 8 km), which was optimised over the Italian area. The validations performed showed that these model data agree closely with different regional high-resolution observational datasets, in terms of both average temperature and precipitation in Bucchignani et al. (2015) and in terms of extreme events in Zollo et al. (2015). In particular, the Representative Concentration Pathway (RCP) 8.5 scenario was applied, based on the IPCC (Intergovernmental Panel on Climate Change) modelling approach to generate greenhouse gas (GHG) concentrations (Meinshausen et al., 2011). Initial and boundary conditions for running RCM simulations with COSMO-CLM were provided by the general circulation model CMCC-CM (Scoccimarro et al., 2011), whose atmospheric component (ECHAM5) has a horizontal resolution of about 85 km. The simulations covered the period from 1971 to 2100; more specifically, the CMIP5 historical experiment (based on historical greenhouse gas concentrations) was used for the period 1976–2005 (Reference Climate scenario - RC), while for the period 2006–2100, a simulation was performed using the IPCC scenario mentioned. The analysis of results was made on RC (1971–2005) and RCP 8.5 divided into three different time periods (2010–2040, 2040–2070 and 2070–2100). Daily reference evapotranspiration (ET<sub>0</sub>) was evaluated according to Hargreaves and Samani, (1985) equation (HS). The reliability of this equation in the study area was perrformed by Fagnano et al., (2001) comparing the HS equation with the Penman–Monteith (PM) equation (Allen et al., 1998).</p> <p>Under the RCP 8.5 scenario the temperature in Destra Sele is expected to increase approximately two degrees celsius respectively every 30 years to 2100 starting from the RC. The differences in temperature between RC and the period 2070–2100 showed an average increase of minimum and maximum temperatures of about 6.2°C (for both min and max). The projected increase of temperatures produces an increase of the expected ET<sub>0</sub>. In particular, during the maize growing season, an average increase of ET<sub>0</sub> of about 18% is expected until 2100.</p> <p>The climate data were provided by the “Regional Models and Geo-Hydrogeological Impacts Division” of the Centro Euro-Mediterraneo sui Cambiamenti Climatici (CMCC), Capua (CE) – Italy, through the support of Dr. Paola Mercogliano and Dr. Edoardo Bucchignani.</p> <p><strong>References</strong></p> <p>Allen, R. G., Pereira, L. S., Raes, D., Smith, M. and W, a B.: Crop evapotranspiration - Guidelines for computing crop water requirements - FAO Irrigation and drainage paper 56, Irrig. Drain., 1–15, doi:10.1016/j.eja.2010.12.001, 1998.</p> <p>Bucchignani, E., Montesarchio, M., Zollo, A. L. and Mercogliano, P.: High-resolution climate simulations with COSMO-CLM over Italy: performance evaluation and climate projections for the 21st century, Int. J. Climatol., 36(2), 735–756, 2015.</p> <p>Fagnano, M., Acutis, M. and Postiglione, L.: Valutazione di un metodo semplificato per il calcolo dell'ET<sub>0</sub> in Campania, Model. di Agric. sostenibile per la pianura meridionale Gest. delle risorse idriche nelle pianure irrigue. Gutenberg, Salerno, ISBN, 88–900475, 2001.</p> <p>Hargreaves, G. H. and Samani, Z. A.: Reference crop evapotranspiration from temperature, Appl. Eng. Agric., 1(2), 96–99, 1985.</p> <p>Kroes, J. G., Van Dam, J. C., Bartholomeus, R. P., Groenendijk, P., Heinen, M., Hendriks, R. F. A., Mulder, H. M., Supit, I. and Van Walsum, P. E. V: Theory description and user manual SWAP version 4, http://www.swap.alterra.nl, Wageningen [online] Available from: www.wur.eu/environmental-research (Accessed 24 July 2019), 2017.</p> <p>Meinshausen, M., Smith, S. J., Calvin, K., Daniel, J. S., Kainuma, M. L. T., Lamarque, J. F., Matsumoto, K., Montzka, S. A., Raper, S. C. B., Riahi, K. and others: The RCP greenhouse gas concentrations and their extensions from 1765 to 2300, Clim. Change, 109(1–2), 213, 2011.</p> <p>Rockel, B., Will, A. and Hense, A.: The regional climate model COSMO-CLM (CCLM), Meteorol. Zeitschrift, 17(4), 347–348, 2008.</p> <p>Scoccimarro, E., Gualdi, S., Bellucci, A., Sanna, A., Fogli, P. G., Manzini, E., Vichi, M., Oddo, P. and Navarra, A.: Effects of Tropical Cyclones on Ocean Heat Transport in a High-Resolution Coupled General Circulation Model, J. Clim., 24(16), 4368–4384, doi:Doi 10.1175/2011jcli4104.1, 2011.</p> <p>Zollo, A. L., Turco, M. and Mercogliano, P.: Assessment of hybrid downscaling techniques for precipitation over the Po river basin, in Engineering Geology for Society and Territory-Volume 1, pp. 193–197, Springer., 2015.</p> <p> </p> <p> </p>
MALDI-TOF-MS reference spectra and sequence data for African bovid collagen for Zooarchaeology by Mass Spectrometry (ZooMS)
<p>MALDI-TOF-MS spectra of extracted collagen from modern African bovids used as reference spectra to develop markers for Zooarchaeology by Mass Spectrometry (ZooMS). Some of this material was also analyzed by LC-MS/MS. That data can be found at MassIVE MSV000084675 (<a href="https://doi.org/doi:10.25345/C5239K">doi:10.25345/C5239K</a>). Information about the species of the samples can be found in Key for Labels.csv file.</p> <p>The sequence data contains annotated alignments of the proteins COL1A1 and COL1A2 and the alignments for the available bovid collagen protein sequences. More information on these files can be found in the corresponding manuscript to this dataset.</p>
Cited references and records of Imperial College London institutional repository grey literature
<p>Cited references (all time) to items published under Imperial College London's grey literature DOI prefix 10.25561 and bibliographic data of deposited Reports in the repository (2016-2020).</p>
Reference Architecture for Trust-based Digital Ecosystems
<p>Pre-recording of the presentation for the paper "Reference Architecture for Trust-based Digital Ecosystems"</p>
Fig 6 in A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library
Fig 6. Neighbour-joining tree showing all available DNA barcodes for species in family Vespertilionidae reported from Peninsular Malaysia. The percentage of pseudoreplicate trees (±70%) in which the DNA barcodes clustered together in the bootstrap test (500 pseudoreplicates) are shown above the branches. Abbreviation as follows: PM = Peninsular Malaysia, VN = Vietnam, BN = Borneo (including Sabah & Sarawak of East Malaysia, Brunei and Kalimantan Indonesia), TH = Thailand, LA = Laos, SM = Sumatera Indonesia, JV = Java Indonesia, CH = China, CM = Cambodia. https://doi.org/10.1371/journal.pone.0179555.g006
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.