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Figure 2 in Mating behavior of nemerteans: present knowledge and future directions
Figure 2. Schematic representation of compact-headed (primitive) and elongate-headed (modified) sperm of nemerteans. Modified after Stricker and Folsom (1998).
Figure 1 in Mating behavior of nemerteans: present knowledge and future directions
Figure 1. Female Lineus viridis with two males immediately after fertilization and deposition of mucus cocoon. Photo courtesy of K. Reise (Wattenmeerstation List/Sylt, Germany).
Source data for "Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods"
<p>The data provided in this repository is the source data for "Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods". This repository contains three directories for ANUGA simulations on (1) present-day topography, (2) glacial isostatic adjustment-corrected topography at 18 ka, and (3) glacial isostatic adjustment-corrected topography at 15.5 ka. Each directory includes hydrodynamic modeling data and topographic reconstruction data. This repository also contains MATLAB scripts for analyzing simulated discharge and shear stress values for replicating plots.</p> <p>Cite as: Pico. T., David, S.R., Larsen, I.J, Mix, A., Lehnigk, K., Lamb, M.P., Glacial isostatic adjustment directed incision of the Channeled Scabland by ice-age megafloods, PNAS, 2022.</p> <p> </p> <p><br> </p>
Fig. 4 in Molecular Evidence For Direct Development In The Rhacophorid Frog, Philautus Acutus (Rhacophoridae, Anura) From Borneo
Fig. 4. Consensus dendrogram of neighbour joining bootstrapping analysis illustrating distances of 12S and 16S rDNA sequences. The four Philautus acutus specimens are conspecific.
Fig. 2 in Molecular Evidence For Direct Development In The Rhacophorid Frog, Philautus Acutus (Rhacophoridae, Anura) From Borneo
Fig. 2. Colouration in life of Philautus acutus, from Gunung Mulu,Sarawak, Malaysia (Borneo). Daytime colouration of specimen somewhat stressed during photography.
Fig. 3 in Molecular Evidence For Direct Development In The Rhacophorid Frog, Philautus Acutus (Rhacophoridae, Anura) From Borneo
Fig. 3. Eggs with froglets assigned to Philautus acutus, from Gunung Mulu, Sarawak, Malaysia (Borneo): a, close-up of two eggs, containing froglets; b, close-up of a single egg. Note the bright iris colouration of the froglet and the opaque yellow outer jelly capsule of the eggs; c, dorsal view of froglet in the vitelline layer, after compact outer jelly capsule was removed. Note X-shaped pattern on dorsum and reduced tail with blood vessels. d, ventral view of froglet in vitelline layer, with compact outer jelly capsule removed. Note gut filled with yolk visible through skin and scattered iridophores.
Text-fig. 2. (A) Orientation of Schizocrania filosa (HALL, 1847) on articulated shells of benthic brachiopod Rafinesquina sp. (A1–A3 – on dorsal valve of articulated shells, A4 – on ventral valve of articulated shell; forward growth direction is unclear in three specimens) from Upper Ordovician, Corryville Formation, Lawrenceburg, Indiana (after www.drydredgers.org/scizo.htm). (B) Orientation of Schizocrania multistriata (REED, 1905) shells on outer face of conulariid Metaconularia imperialis test (Dobrotivá Formation, Kařízek mine, Barrandian area; after Havlíček and Vaněk 1996); preserved conulariid shell in white, suggested outline of incomplete conulariid test in grey. Arrows indicate direction of forward growth of Schizocrania specimens. in Schizocrania (Brachiopoda, Discinoidea): Taxonomy, Occurrence, Ecology And History Of The Earliest Epizoan Lingulate Brachiopod
Text-fig. 2. (A) Orientation of Schizocrania filosa (HALL, 1847) on articulated shells of benthic brachiopod Rafinesquina sp. (A1–A3 – on dorsal valve of articulated shells, A4 – on ventral valve of articulated shell; forward growth direction is unclear in three specimens) from Upper Ordovician, Corryville Formation, Lawrenceburg, Indiana (after www.drydredgers.org/scizo.htm). (B) Orientation of Schizocrania multistriata (REED, 1905) shells on outer face of conulariid Metaconularia imperialis test (Dobrotivá Formation, Kařízek mine, Barrandian area; after Havlíček and Vaněk 1996); preserved conulariid shell in white, suggested outline of incomplete conulariid test in grey. Arrows indicate direction of forward growth of Schizocrania specimens.
TYPES: Male holotype from Panama: Panama: Parque Nacional Altos de Campana, 1 hectare PANCODING Inventory, 895 m, 8.68333°, -79.92972°, June 14–19, 2007, M. Arnedo, D. Dimitrov, G. Hormiga, F. Labarque, M. Ramírez, deposited in MIUP, PBI_OON 42313; same data, 1 male paratype deposited in MACN-Ar 29895, PBI_OON 42312. ETYMOLOGY: A noun in apposition; in Greek religion and mythology, Pan is the god of the wild natural world, of shepherds, flocks, and mountains, and of hunting and rustic music. He has hindquarters, legs, and horns of a goat, and the name is here employed to note the large mac- rosetae at the eye region of males that resemble the horns in some illustrations of this god. DIAGNOSIS: This is one of the most autapomor- phic species from the Americas; males have the labium fused with the sternum (fig. 34B), small chelicerae, shorter than the endite length, with anterior blunt projections, and directed backward in lateral view (fig. 34D, E); clypeus directed back- ward (fig. 34D); two light areas on the sternum just below the endites (fig. 34B), carapace almost flat in lateral view and two strong macrosetae at the eye region, pointing forward (fig. 34C–E). Other characters of the male palp, such as the presence of two apophyses, also distinguish this species from others (fig. 38D–F). MALE (PBI_OON 42312): Total length 1.00. Habitus as in figure 34A–C. CEPHALOTHO- RAX: Carapace orange, with brown stripe along in Taxonomic Revision Of The Jumping Goblin Spiders Of The Genus Orchestina Simon, 1882, In The Americas (Araneae: Oonopidae)
TYPES: Male holotype from Panama: Panama: Parque Nacional Altos de Campana, 1 hectare PANCODING Inventory, 895 m, 8.68333°, -79.92972°, June 14–19, 2007, M. Arnedo, D. Dimitrov, G. Hormiga, F. Labarque, M. Ramírez, deposited in MIUP, PBI_OON 42313; same data, 1 male paratype deposited in MACN-Ar 29895, PBI_OON 42312. ETYMOLOGY: A noun in apposition; in Greek religion and mythology, Pan is the god of the wild natural world, of shepherds, flocks, and mountains, and of hunting and rustic music. He has hindquarters, legs, and horns of a goat, and the name is here employed to note the large mac- rosetae at the eye region of males that resemble the horns in some illustrations of this god. DIAGNOSIS: This is one of the most autapomor- phic species from the Americas; males have the labium fused with the sternum (fig. 34B), small chelicerae, shorter than the endite length, with anterior blunt projections, and directed backward in lateral view (fig. 34D, E); clypeus directed back- ward (fig. 34D); two light areas on the sternum just below the endites (fig. 34B), carapace almost flat in lateral view and two strong macrosetae at the eye region, pointing forward (fig. 34C–E). Other characters of the male palp, such as the presence of two apophyses, also distinguish this species from others (fig. 38D–F). MALE (PBI_OON 42312): Total length 1.00. Habitus as in figure 34A–C. CEPHALOTHO- RAX: Carapace orange, with brown stripe along
Anti-symmetric Compton scattering in LiNiPO$_4$: Towards a direct probe of the magneto-electric multipole moment
<p>Data files and photos related to publication: 'Anti-symmetric Compton scattering in LiNiPO$_4$: Towards a direct probe of the magneto-electric multipole moment'</p>
Datasets with weather forecasts (Temperature, Wind Direction, Humidity, Pressure, Wind Speed, GHI)
<p>Datasets with weather forecasts for HLU7 (Temperature, Wind Direction, Humidity, Pressure, Wind Speed, GHI) of the CROSSBOW project.</p>
ULS and UAV-MS Directly Georeferenced Point Clouds of the River Teme
<p>Directly Georeferenced Point Clouds of the River Teme for PhD research, provided as supporting information to methods described. These are unfiltered point clouds of a vegetated river reach in the UK, given in WGS UTM_30N CRS. UAV-MS are SfM derived point clouds and ULS UAV laser scanning based point clouds.</p>
Inventory data of directly seeded Douglas fir regeneration in Northwest Germany
<p>This data contains measurements from an inventory study of direct seeding of Douglas fir in Northwest Germany.</p> <p>Measurements were taken in 28 randomly selected stands with a density of 50 measurements per ha.</p> <p>A counting strip of 4m length is the primary measurement unit.</p> <p>In total, 1807 measurements are contained in the data-set.</p> <p>This data is analysed by Nikolas von Lüpke and Holger Sennhenn-Reulen in a forthcoming publication.</p>
Populations of local direction-selective cells encode global motion patterns generated by self-motion. Data, Code and Model.
<p>Directional tuning of the population of local motion detectors T4/T5 in the visual system of the fruit fly <em>Drosophila melanogaster</em>. Direction tuning and receptive field location was measured by recording responses to visual stimuli containing dark or bright edges/stripes moving into 8 directions. All provided MATLAB scripts were used to analyze and illustrate data show in the manuscript 'Populations of local direction-selective cells encode global motion patterns generated by self-motion.'</p> <p>All data were obtained using <em>in vivo </em>two photon microscopy. Image time series were preprocessed using SIMA python software for motion alignment and further processed using custom written matlab or python code.</p> <p>Please find all relevant information to use the code in the README file.</p>
Datasets and OpenLCA foreground data processes for the article: Understanding environmental trade-offs and resource demand of direct air capture technologies through comparative life-cycle assessment
<p>This data set contains the supplementary data sets (1-3) and exported foreground data processes from OpenLCA for the manuscript “Understanding environmental trade-offs and resource demand of direct air capture technologies through comparative life-cycle assessment”, submitted to Nature Energy.</p> <p>This repository contains:</p> <ul> <li>Supplementary data set 1: Ancillary calculations and numerical values for HT-Aq DAC</li> <li>Supplementary data set 2: Ancillary calculations and numerical values for TSA DAC</li> <li>Supplementary data set 3: Ancillary calculations and numerical values shown in plots and table 3</li> <li>Foreground data from OpenLCA. OpenLCA process model for different cases of HT-Aq DAC and TSA DAC. To re-run the LCA calculations, OpenLCA (freeware) and the Ecoinvent 3.5 database (license required) need to be installed on a standard desktop computer or laptop with at least 8 GB RAM.</li> </ul>
Dataset related to "Atomic Force Microscope with an Adjustable Probe Direction and Integrated Sensing and Actuation"
<p>These original measurement data relate to the publication: J. Schaude, T. Hausotte: Atomic Force Microscope with an Adjustable Probe Direction and Integrated Sensing and Actuation, Nanomanufacturing and Metrology 5, pp. 519-148, <a href="https://doi.org/10.1007/s41871-022-00143-9">https://doi.org/10.1007/s41871-022-00143-9</a>. Please refer to this open access publication for a detailed description of the measurement setup and procedure.</p> <p>All data are in ASCII-format. Each file contains six columns, where column one to three are the <em>x</em>, <em>y</em>, and <em>z</em>-coordinates of the positioning system, column four is the demodulated signal of the AFM (<em>R</em><sub>AFM</sub>) and columns five and six are the raw signals of the <em>z</em>-interferometer (<em>Q</em><sub>A</sub> and <em>Q</em><sub>B</sub>).</p> <p><strong>Content of the folders</strong></p> <p>10_Calibrations: Repeated calibration of the AFM against the <em>z</em>-interferometer of the NMM-1.</p> <p>20_Standstill-Measurements: Three standstill measurements for 90 s each.</p> <p>30_Long-Term-Precision: Standstill measurements for 15 s every 10 min for in sum 18 hours.</p> <p>40_Scans: Repeated closed-loop scans on a calibration grating.</p> <p>50_SINCOS: Repeated movement of the stage in z-direction for 2 µm with the cantilever being in free air just before the sample.</p> <p><strong>Acknowledgement</strong></p> <p>This project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) –TRR 285 -Project-ID 418701707, subproject C05</p>
Data and supplementary files for: Directing Min protein patterns with advective bulk flow
<p>Simulation files as well as experiment data and analysis for the paper "Directing Min protein patterns with advective bulk flow".</p>
An in silico guided directed evolution of protease: Spotlighting the beneficial positions
<p>Supplementary Information for "An in silico guided directed evolution of protease: Spotlighting the beneficial positions".</p>
Deep margin elevation – present status and future directions
<p>BibTex database file, containing the records identified in the electronic search, and the datasets generated and analyzed in this article on deep margin elevation.</p> <p>Information on the risk of bias of included studies is presented in supplementary tables (Tables S1-S38 and Questionnaire SQ1). The ROBFEAD, MINORS, RoBDEMAT, and AMSTAR tools were used for <em>in silico</em> studies, clinical studies, <em>in vitro</em> studies, and reviews respectively. The CASP qualitative research checklist was used for healthcare survey studies.</p>
Compilation of LCF and TMF Data for Single-Crystal and Directionally-Solidified Ni-base Superalloys Loaded in <001>
<p>This Excel file contains a compilation of low cycle fatigue (LCF) and thermomechanical fatigue (TMF) data for single-crystal (SX) and directionally-solidified (DS) Ni-base superalloys that are typically used for blades and vanes in gas turbines. Most of the data is generated by strain-controlled uniaxial fatigue tests. Both continuous cycling and cycles with dwells (hold times) at either the maximum or minimum of the cycle are included in the dataset.</p> <p>Several different alloys with similar mechanical behaviors are included in the dataset. The dataset only includes materials that have undergone a solution and age heat treatment typical of that applied to blade and vane components. All the fatigue data in this dataset is limited to uniaxial cyclic loading in the <001> direction for SX and in the longitudinal direction for DS alloys. The data in this dataset has been extracted from the public domain. The sources of the data are included in the Excel file.</p> <p>This data is used to train a Probabilistic Physics-guided Neural Network (PPgNN) that outputs a strain-life curve, including the mean response and 95% confidence intervals. The INPUTS and OUTPUTS used in the PPgNN are highlighted in the Excel file.</p>
Experimental evidence for short term directional selection of epigenetic trait variation
<p>This Arabidosis data folder includes 5 folders providing the data and code associated with the publication entitled "Experimental evidence for short term directional selection of epigenetic trait variation" by Pujol et al. in Peer Community Journal:</p> <p>"in Silico 1000 resampling" folder includes two folders; one for Population 1, and one for Population 2, each including 24 files. Each file presents the 1000 lists of plant IDs that were randomly sampled to build control groups (listrand), and the corresponding lists of plant IDs selected on the basis of trait values to build the corresponding high (Top) and low (Bot) selection lines, for the strong (20) and weak (60) selection intensities.</p> <p>“phenotypic and epiril data” includes two csv files; data_pop1 and data_pop2, respectively for population 1 and 2, and a readme txt file that presents the data included in the files.</p> <p>“scripts R epigenomic selection” includes two R script files: “PCA_arabidopsis”, which includes the R code used to conduct the PCA analysis on epiRIL data and “Arabette_analysis_loop_Epigenotypes_data”, which is used to insert that epigenotype data in the analysis.</p> <p>“scripts R epigenomic validation” includes nine R scripts used to conduct tests of molecular epigenomic data validation and comparison with existing data from the literature: “Script 1 Extract 126 markers from BSMAP ouput files and apply methylkit”, “Script 2 Boxplots of the BS signal distribution for the 126 markers and their correspondence to published HMM classification”, “Script 3 Correlation between EM-seq and BS seq_published_data for the 126 markers”, “Script 4 Correlation between the BS signals of EM-seq and WGBS data for the 126markers”, “Script 5 Hierarchical clustering of the epiRILs EM-seq and published epigenomic data”, “cluster and PCA analysis of Col wt vs 24 sequenced epiRILs”, which filenames are self-explanatory. “methylkit_epiRILs_vs_Col_wt_DMCs” was used to use methylkit in order to identify Differentially Methylated Cytosines between epiRILs and in comparison to Col-0. “methylkit_tiles_script” was used to build the tiles in Methylkit. “verif DMR CHG context” was used to verify differentially methylated regions in the CHG context.</p> <p>“scripts R phenotypic selection” includes four R scripts “Arabette_analysis”, “Arabette_analysis_loop_Phenotypes_data”, “Arabette_analysis_loop_pop1_final”, “Arabette_analysis_loop_pop2_final” that were used to estimate the parameters used for comparing selection treatments, in other words, to estimate means and confidence intervals (“loop” scripts) in population 1 (“pop1” script) and population 2 (“pop2” script)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.