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3,172 results for “Publications”
BioPharma Collaborative Breast Cancer v1.0 public
BrCa cohort v1.0-public (GENIE 2025) GENIE 18.0-public. Several hundred different variables are collected for each of the BPC cohorts; consult the Documentation for further detail. To learn more about which variables are visualized in cBioPortal and how, see the cBioPortal ReadMe. Access the full data set from Synapse. R programmers can download and analyze data with the package genieBPC. The data presented here includes only those patients under the age of 40 years old.
BioPharma Collaborative Colorectal Cancer v2.0 Public
Colorectal Cancer (CRC) cohort v2.0-public GENIE Release 12.0-public. Several hundred different variables are collected for each of the BioPharma Collaboration (BPC) cohorts; consult the Documentation for further detail. https://www.aacr.org/professionals/research/aacr-project-genie/bpc/crc-public-release/
Tumor Compendium 21.02 Public Hybrid Capture (February 2021)
This compendium was released in February 2021. It includes 45 high-grade glioma (grades 3 and 4) samples from University of Arkansas Medical Sciences (44 reference samples, plus patient of interest). These data were generated through the Tempus xT platform, which uses a hybrid capture library selection method.
Data for the publication 'Using a holographic imager on a tethered balloon system for microphysical observations of boundary layer clouds'
<p>This repository contains the data for the paper: Ramelli, F., Beck, A., Henneberger, J., and Lohmann, U.: Using a holographic imager on a tethered balloon system for microphysical observations of boundary layer clouds, Atmos. Meas. Tech. Discuss., https://doi.org/10.5194/amt-2019-210, in review, 2019.</p>
Public medical text record in Japan
<p>This dataset is the public medical text record with quality evaluation.</p> <p>Any researchers can use this dataset without privacy issues. </p> <p>CC BY-NC 4.0</p>
Supplementary material for the publication "NN architectures for VS classification"
<p>The dataset provided here is part of the study paper on neural architectures for variable stars classification (Jamal and Bloom, 2020). The dataset is constructed from the public photometry variable stars database of the MACHO survey (Alcock et al., 1996).</p> <p>Included in the dataset are phase-folded light-curves, as well as the times-series, for 17603 variable stars from the public MACHO database. Please refer to the readME file for further description.</p> <p>This dataset is provided for research-use only under the non-commercial license on Zenodo.<br> For any use of this dataset, please make sure to cite the MACHO collaboration (see credits hereafter) and the following references.</p> <p><br> <strong>** REFERENCES **</strong></p> <ul> <li>Alcock, C., Allsman, R. A., Axelrod, T. S., et al. 1996, ApJ, 461, 84, doi:10.1086/177039</li> <li>MACHO public database: http://macho.nci.org.au/</li> <li>Jamal, S., & Bloom, J. S., 2020, arXiv:2003.08618</li> </ul> <p><br> <strong>** ACKNOWLEDGMENTS </strong><em>(on the use of the public MACHO VS data)</em><strong> **</strong><br> "This work utilizes public domain data obtained by the MACHO Project, jointly funded by the US Department of Energy through the University of California, Lawrence Livermore National Laboratory under contract No. W-7405-Eng-48, by the National Science Foundation through the Center for Particle Astrophysics of the University of California under cooperative agreement AST-8809616, and by the Mount Stromlo and Siding Spring Observatory, part of the Australian National University."</p>
དབའ་བཞེད་ illustrations for publication [chapters 3]
<p>དབའ་བཞེད་ illustrations for publication [chapters 3]</p>
དབའ་བཞེད་ illustrations for publication [chapters 1-2]
<p>དབའ་བཞེད་ illustrations for publication</p>
Data for the publication "Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM"
<p>This repository contains the data for the paper:</p> <p>"Muench, S., and Lohmann, U.: Developing a Cloud Scheme with Prognostic Cloud Fraction and Two Moment Microphysics for ECHAM-HAM. Journal of Advances in Modeling Earth Systems. In review."</p> <p>Each netCDF-file contains the model data to reproduce the figures in our paper. Figure 1-3 are conceptual schematics so there is not data for these figures.</p>
དབའ་བཞེད་ illustrations for publication [chapters 3]
<p>དབའ་བཞེད་ illustrations for publication [chapters 3] B&W version.</p>
Dataset accompanying publication: "Modulation of Cortical Oscillations by Low-Frequency Direct Cortical Stimulation is State-Dependent"
<p>The mat file consists of the following Matlab variables</p> <ol> <li><strong>Electrode Distance</strong>: 3 x 1 cell array containing the arrays (trial x electrode) of distance from stimulating electrode to recording electrode for the three ECoG participants. (First array corresponds to P001, Second array corresponds to P005 and Third array corresponds to P008)</li> <li><strong>Spectra_Electrode_EC</strong>: 3 x 1 cell array consisting of nTrial x nFreq x nChannels x nEpochs matrices for each subject’s eyes-closed experiment. nTrial corresponds to number of trials, nFreq corresponds to frequencies at which spectral power is calculated, nChannels corresponds to number of electrodes in the analysis and nEpochs corresponds to “Before Stimulation”, “During Stimulation” and “After Stimulation” epochs.</li> <li><strong>Spectra_Electrode_EO</strong>: 3 x 1 cell array consisting of nTrial x nFreq x nChannels x nEpochs matrices for each subject’s eyes-open experiment. The dimensions are the same as above. The first array consists of task-engaged dataset from Participant P001.</li> <li><strong>MI_Summary</strong>: 8 x 1 cell array consisting of 3 x 1 cell arrays of modulation indexes for the three participants. The 8 arrays stand for the modulation indexes in different epochs and different frequencies. Refer <strong>MI_Summary_Names</strong></li> <li><strong>MI_Summary_Names</strong>: 8 x 1 cell array consisting of strings denoting the arrays in <strong>MI_Summary</strong>. <strong>During</strong> in text corresponds to “During Stimulation” epoch and <strong>After</strong> corresponds to “After Stimulation” epoch.</li> <li><strong>f</strong>: Frequencies at which spectral power was estimated.</li> </ol>
Complementary Data of Groundwater model for the Publication: "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate"
<p>This repository provides the resources related to the publication "Comparison of methods to calculate groundwater recharge for karst aquifers under Mediterranean climate." It includes the groundwater model data sets.</p>
Matlab code associated with publication "Mathematical model of the multi-amino acid multi-transporter system predicts uptake flux in CHO cells"
<p>Matlab code associated with publication "Mathematical model of the multi-amino acid multi-transporter system predicts uptake flux in CHO cells" </p> <p>Published version : Ashley Sreejan, Mugdha Gadgil, Chetan J. Gadgil, Mathematical model of the multi-amino acid multi-transporter system predicts uptake flux in CHO cells, Journal of Biotechnology, Volume 344, 2022, Pages 40-49, ISSN 0168-1656</p> <p>Published version available at https://doi.org/10.1016/j.jbiotec.2021.12.003</p> <p>One version of the manuscript is available at doi:10.1101/2021.04.26.441392</p>
Dataset related to the publication "Brisk walking can be a maximal effort in heart failure patients: a comparison of cardiopulmonary exercise and 6 min walking test cardiorespiratory data"
<p><strong>Aims: </strong>Cardiopulmonary exercise test (CPET) and 6 min walking test (6MWT) are frequently used in heart failure (HF). CPET is a maximal exercise, whereas 6MWT is a self-selected constant load test usually considered a submaximal, and therefore safer, exercise, but this has not been tested previously. The aim of this study was to compare the cardiorespiratory parameters collected during CPET and 6MWT in a large group of healthy subjects and patients with HF of different severity.</p> <p><strong>Methods and results: </strong>Subjects performed a standard maximal CPET and a 6MWT wearing a portable device allowing breath-by-breath measurement of cardiorespiratory parameters. HF patients were grouped according to their CPET peak oxygen uptake (peakV̇O<sub>2</sub> ). One hundred and fifty-five subjects were enrolled, of whom 40 were healthy (59 ± 8 years; male 67%) and 115 were HF patients (69 ± 10 years; male 80%; left ventricular ejection fraction 34.6 ± 12.0%). CPET peakV̇O<sub>2</sub> was 13.5 ± 3.5 mL/kg/min in HF patients and 28.1 ± 7.4 mL/kg/min in healthy subjects (P < 0.001). 6MWT-V̇O<sub>2</sub> was 98 ± 20% of the CPET peakV̇O<sub>2</sub> values in HF patients, while 72 ± 20% in healthy subjects (P < 0.001). 6MWT-V̇O<sub>2</sub> was >110% of CPET peakV̇O<sub>2</sub> in 42% of more severe HF patients (peakV̇O<sub>2</sub> < 12 mL/kg/min). Similar results have been found for ventilation and heart rate. Of note, the slope of the relationship between V̇O<sub>2</sub> at 6MWT, reported as a percentage of CPET peakV̇O<sub>2</sub> vs. 6MWT V̇O<sub>2</sub> reported as the absolute value, progressively increased as exercise limitation did.</p> <p><strong>Conclusions: </strong>In conclusion, the last minute of 6MWT must be perceived as a maximal or even supramaximal exercise activity in patients with more severe HF. Our findings should influence the safety procedures needed for the 6MWT in HF.</p>
Data publication for the paper entitled Impact of Ocean Data Assimilation on Climate Predictions with ICON-ESM
<p>The files contain the source code of ICON-ESM-V1.0, primary data and scripts used in the analyses and for producing the figures for the paper "Impact of Ocean Data Assimilation on Climate Predictions with ICON-ESM" by Pohlmann, H., Brune, S., Fröhlich, K., Jungclaus, J. H., Sgoff, C., and Baehr, J. (2022, JAMES).</p>
Data associated with a sequence of publications on polysaccharide/gelatin edible films incorporated with astaxanthin
<p>This repository contains the dataset needed for the papers concerning polysaccharide/gelatin edible films incorporated with increasing concentrations of synthetic water-soluble AstaSana astaxanthin. This dataset contains physicochemical, release, and antioxidant properties of binary (75/25) carboxymethyl cellulose/ gelatin, octenyl succinic anhydride starch/ gelatin, gum Arabic/gelatin, and water-soluble soy polysaccharide/gelatin blend films supplemented with increasing concentrations (0, 0.25, 0.5, 1%) of astaxanthin. The database has been developed within the National Science Centre (Poland)-funded project number 2019/35/N/NZ9/01795.</p>
Dataset associated with the journal publication "EXTRA-NUCLEAR TERT COUNTERACTS OXIDATIVE STRESS AND PROMOTES PROGRESSION IN PAPILLARY THYROID CARCINOMA"
<p>Abstract:</p> <p>The reactivation of TERT is associated with poor outcome in papillary thyroid cancer (PTC). Extra-telomeric functions of TERT were reported, with a protective role against oxidative stress (OS). The aim of the present study was to explore the extra-nuclear TERT localization in PTC and its role in cancer progression.</p> <p>TERT nuclear export under OS were analyzed in K1 PTC cell line. We investigated the role of different TERT localizations using specific TERT constructs that limit its localization to the nucleus or to the mitochondria. The effect of SRC kinase inhibitor PP2, which reduces TERT nuclear export, was investigated as well. Moreover, TERT localization was analyzed in 39 PTC tissues and correlated with the genetic profile and the level of OS, DNA damage and apoptosis in the tumors and with the clinical characteristics of the patients.</p> <p><a name="_Hlk150318531"></a>We demonstrated that TERT is exported from the nucleus in response to OS induced either from H2O2 or the BRAF inhibitor PLX4720. We proved that extra-nuclear TERT reduces mitochondrial OS and induces mitochondrial fragmentation. Moreover, limiting mitochondrial TERT localization reduced proliferation, migration, AKT phosphorylation and glycolysis and increased DNA damage and p21 expression. Finally, in PTC tissues the fraction of mitochondrial/nuclear TERT resulted inversely correlated with OS and p21 expression and associated with tumor persistence.</p> <p>In conclusion, our data indicate that extra-nuclear TERT is involved in reducing the effect of excessive OS, thus <a name="_Hlk150318490"></a>promoting cancer cell survival. Extra-nuclear TERT may thus represent a marker of cancer progression and a possible therapeutic target in PTC.</p> <p> </p> <p>This dataset of raw data cannot be made publicly available as it contains sensitive information, but may be made available to interested researchers on reasonable request at m.muzza@auxologico.it</p>
Raw database; extract from the public database of the Chilean National Health Survey 2009-10
<p>Chilean NHS 2009-10 database. It includes the interest variables for the study: Health related quality of life (HRQoL), musculoskeletal symptoms, age, sex, educational level and residence area.</p>
artist 20 the public datatset from LabROSA
<p>Music Artist Identification: artist20 the public datatset from LabROSA</p>
Public perception of gingival margin contour in absent maxillary lateral incisor-canine substitution cases
<p>Dataset for all analyses of the study; initially made available to editor and referees during peer review procedure. After acceptance, dataset will be made openly available to anyone.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.