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193 results for “Cod”

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zenodo40/100

Nutrient abatement COD in Valladolid city

<p>In the H2020 UrbanGreenUP some NBS related to water management, such as the NTWP and the Electrowetlands, are designed for the removal of organic compounds and nutrients from the wastewater. The treatment of wastewater by means of green solutions supposes the discharge of low loads of organic matter, nutrients, and other pollutants (such as heavy metals or emerging contaminants) to the environment. Therefore, the safety discharge to the environment or later reuse for different purposes (such as irrigation of green areas) is ensured.</p> <p>This KPI aims at determining the organic matter, nutrients, and other pollutants removal in the NBS. For that purpose, the concentration of the specific contaminants to be monitored are determined both in the influent (raw wastewater) and the final effluent of the NBS. The reduction observed in the concentration is the abatement reached in the monitored system. This KPI involves sampling and analytical determinations in a lab.&nbsp;&nbsp;</p>

opencc-by-4.0Mar 2023View details →
zenodo40/100

Figure 6. Pseudophycis bachus. A, B, NMNZ P.054828 in A review of the Australasian genus Pseudophycis (Gadiformes: Moridae), redescribing its four species and resurrecting the name Physiculus palmatus Klunzinger, 1872, for the Australian Red Cod

Figure 6. Pseudophycis bachus. A, B, NMNZ P.054828, neotype, 351 mm SL, 2.5 km off coast from Whanganui River bar, Whanganui, New Zealand, fresh specimen, lateral view of body and anterior body showing black pectoral blotch respectively (photographs C. Struthers, NMNZ); C, unpublished line drawing by S. Parkinson of Enchelyopus bachus Forster in Bloch and Schneider, 1801 (reproduced from Whitehead, 1969: pl. 31).

opencc-by-4.0Dec 2021View details →
zenodo40/100

Figure 5 in A review of the Australasian genus Pseudophycis (Gadiformes: Moridae), redescribing its four species and resurrecting the name Physiculus palmatus Klunzinger, 1872, for the Australian Red Cod

Figure 5. Scatter plot of canonical analysis of principal coordinates scores on the first and second canonical axes for 124 specimens of Pseudophycis, including types.

opencc-by-4.0Dec 2021View details →
zenodo40/100

Figure 2. Pseudophycis palmata. A, B, CSIRO H 7366-01, 265 in A review of the Australasian genus Pseudophycis (Gadiformes: Moridae), redescribing its four species and resurrecting the name Physiculus palmatus Klunzinger, 1872, for the Australian Red Cod

Figure 2. Pseudophycis palmata. A, B, CSIRO H 7366-01, 265 mm SL, Storm Bay, east of Variety Bay on North Bruny Island, Tasmania, Australia, fresh specimen, lateral view of body and lateral view of head and anterior body with black pectoral blotch, respectively, (photographs C. Devine, CSIRO); C, SMNS 1589, holotype, 172 mm SL, Port Phillip, Hobsons Bay, Victoria, Australia (photograph C. Struthers, NMNZ).

opencc-by-4.0Dec 2021View details →
zenodo40/100

Figure 8. Pseudophycis breviuscula. A, CSIRO H 4384-01, 110 in A review of the Australasian genus Pseudophycis (Gadiformes: Moridae), redescribing its four species and resurrecting the name Physiculus palmatus Klunzinger, 1872, for the Australian Red Cod

Figure 8. Pseudophycis breviuscula. A, CSIRO H 4384-01, 110 mm SL, Albany, Western Australia (photograph compliments CSIRO Marine Research); B, BMNH 1855.9.19.1182, holotype of Lota breviuscula, 152 mm SL, Bay of Islands, New Zealand (photograph © The Trustees of the Natural History Museum, London).

opencc-by-4.0Dec 2021View details →
zenodo40/100

Figure 1 in A review of the Australasian genus Pseudophycis (Gadiformes: Moridae), redescribing its four species and resurrecting the name Physiculus palmatus Klunzinger, 1872, for the Australian Red Cod

Figure 1. Hasegawa-Kishino-Yano maximum likelihood tree of 65 COI sequences from four purported species of Pseudophycis, along with seven sequences for an outgroup species, Auchenoceros punctatus. Percentage bootstrap values followed by bootstrap values in p-distance neighbour joining and maximum parsimony trees are given for all well supported nodes (2 of 3 exceeding 80%). Specimen numbers are those of registered museum vouchers or sequence numbers in the Barcode of Life Database (BOLD, http://www.barcodinglife.org/).

opencc-by-4.0Dec 2021View details →
dryad40/100

Morphology of Arctic cod (Boreogadus saida) assessed according to habitat preference and age in the Beaufort Sea

<p><span>Arctic cod (<em>Boreogadus</em> <em>saida</em>) represents the most widespread and abundant fish in the Arctic and is a critical trophic link in its ecosystems. Like many species endemic to the region, it has lost essential habitat as the extent and thickness of sea ice </span><span>have </span><span>declined substantially in recent </span><span>decades. Extreme warming induced by climate change continues to deteriorate polar marine environments. Thus, understanding how Arctic cod uses and partitions its habitat/environment is central to its conservation. We assessed Arctic cod functional morphology using traditional (including gill rakers) and geometric morphometrics and explored whether these differed among habitats and age classes using multivariate techniques. While distinct ecotypes have been proposed, these were not detected in our analyses. Rather, results show similar patterns in the external morphology of Arctic cod across habitats and age classes in the Beaufort Sea. However, analysis of gill rakers revealed concurrent habitat- and age-specific changes likely associated with dietary preferences. Findings indicate that although Arctic cod does not specialise in external morphological features in any habitat, important aspects of its internal feeding morphology </span><span>shift </span><span>as it grows, likely underpinning important distributional changes and the species' critical role in transferring energy in Arctic marine ecosystems.</span></p>

opencc-zeroJul 2023View details →
dryad40/100

Atlantic cod individual spatial behaviour and stable isotope associations in a no-take marine reserve

<ol> <li>Foraging is a behavioural process and, therefore, individual behaviour and diet are theorized to covary. However, few comparisons of individual behaviour type and diet exist in the wild.</li> <li>We tested whether behaviour type and diet covary in a protected population of Atlantic cod, <em>Gadus</em> <em>morhua</em>. </li> <li>Working in a no-take marine reserve, we could collect data on natural behavioural variation and diet choice with minimal anthropogenic disturbance. We inferred behaviour using acoustic telemetry and diet from stable isotope compositions (expressed as δ<sup>13</sup>C and δ<sup>15</sup>N values). We further investigated whether behaviour and diet could have survival costs.</li> <li>We found cod with shorter diel vertical migration distances fed at higher trophic levels. Cod δ<sup>13</sup>C and δ<sup>15</sup>N values scaled positively with body size. Neither behaviour nor diet predicted survival, indicating phenotypic diversity is maintained without survival costs for cod in a protected ecosystem.</li> <li>The links between diet and diel vertical migration highlight that future work is needed to understand whether the shifts in this behaviour during environmental change (e.g. fishing or climate), could lead to trophic cascades. </li> </ol>

opencc-zeroSep 2023View details →
dryad40/100

Large females connect Atlantic cod spawning sites

<p>In this study, we used acoustic telemetry to monitor the movements of mature Atlantic cod (<em>Gadus morhua</em>) during the winter spawining season. The fish were captured in traps with the help of a local fisher, and released near their point of capture after tagging and body size measurements. Fish detection data were downloaded from the moored receivers twice per year, before and after the spawning season. The acoustic receivers were distributed among several known inshore spawning grounds, and we used network analyses to quantify how individual cod moved at a finer and broader scale among these sites. Movement traits representing connectivity were used as response variables in the statistical analyses, while body size measurements, residency (time spent within the array), tagging location and year, were tried as predictors. </p>

opencc-zeroOct 2023View details →
dryad40/100

Tracing 600 years of long-distance Atlantic cod trade in medieval and post-medieval Oslo using stable isotopes and ancient DNA

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publicOct 2024View details →
dryad40/100

Morphology of Arctic cod (Boreogadus saida) assessed according to habitat preference and age in the Beaufort Sea

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publicJul 2023View details →
dryad40/100

Atlantic cod individual spatial behaviour and stable isotope associations in a no-take marine reserve

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publicSep 2023View details →
dryad40/100

Allee effects and the allee-effect zone in northwest atlantic cod

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publicDec 2021View details →
dryad40/100

Otolith annual growth increments for cod populations in the Northeast Atlantic

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publicOct 2022View details →
dryad40/100

Large females connect Atlantic cod spawning sites

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publicOct 2023View details →
zenodo36/100

Data & example videos: Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod

<p>Data abstract:</p> <p>The daily proportions of time each individual fish spent foraging, swimming and being stationary, this data was used for the analysis in the reference below.</p> <p>&nbsp;</p> <p>Video abstract:</p> <p>Some example video clips from which the behavioural state of both individuals was scored.</p> <p>&nbsp;</p> <p>Conference proceeding abstract:</p> <p>To estimate population level effects of anthropogenic sound on fish, data on energy intake and expenditure is needed. We present an experimental design of a controlled behavioural experiment that allows to collect relatively long-term data on foraging and swimming behaviour of Atlantic cod during sound exposures. Data on such behavioural states can be used as proxies for energy intake and expenditure. The Atlantic cod exhibited natural foraging behaviour in the experimental basins and the design allowed for efficient scoring of the behaviour throughout the 6-day trials. We conducted a pilot of three trials and share the experimental design to encourage other researchers to collect data on (proxies for) energy intake and expenditure to aid estimation of population level effects of sound exposures.</p> <p>&nbsp;</p> <p>Reference:</p> <p>Hubert, J., Wille, D.A., Slabbekoorn, H.&nbsp;(2020)&nbsp;Exploring effects of sound on the time budget of fishes: an experimental approach with captive cod.&nbsp;Proceedings of Meetings on Acoustics. 37 (1). 010012. DOI:10.1121/2.0001253.</p>

opencc-by-4.0Jun 2020View details →
dryad36/100

Predator-prey overlap in three dimensions: cod benefit from capelin coming near the seafloor

<p>Spatial overlap between predator and prey is a prerequisite for predation, but the degree of overlap is not necessarily proportional to prey consumption. This is because many of the behavioural processes that precede ingestion are non-linear and depend on local prey densities. In aquatic environments, predators and prey distribute not only across a surface, but also vertically in the water column, adding another dimension to the interaction. Integrating and simplifying behavioural processes across space and time can lead to systematic biases in our inference about interaction strength. To recognise situations when this may occur, we must first understand processes underlying variation in prey consumption by individuals. Here we analysed the diet of a major predator in the Barents Sea, the Atlantic cod (Gadus morhua), aiming to understand drivers of variation in cod's feeding on its main prey capelin (Mallotus villosus). Cod and capelin only partly share habitats, as cod mainly reside near the seafloor and capelin inhabit the free water masses. We used data on stomach contents from ~2000 cod individuals and their surrounding environment collected over 12 years, testing hypotheses on biological and physical drivers of variation in cod's consumption of capelin, using Generalized Additive Models. Specifically, effects of capelin abundance, capelin depth distribution, bottom depth, and cod abundance on capelin consumption were evaluated at a resolution scale of 2 km. We found no indication of food competition as cod abundance had no effect on capelin consumption. Capelin abundance had small effects on consumption, while capelin depth distribution was important. Cod fed more intensively on capelin when capelin came close to the seafloor, especially at shallow banks and bank edges. Spatial overlap as an indicator for interaction strength needs to be evaluated in three dimensions instead of the conventional two when species are partly separated in the water column.</p>

opencc-zeroJan 2021View details →
dryad36/100

Multiple-batch spawning as a bet-hedging strategy in highly stochastic environments: an exploratory analysis of Atlantic cod

<p><span><span><span><span><span><span><span><span><span><span><span>Stochastic environments shape life-history traits and can promote selection for risk-spreading strategies, such as bet-hedging. Although the strategy has often been hypothesised to exist for various species, empirical tests providing firm evidence have been rare, mainly due to the challenge in tracking fitness across generations. Here, we take a 'proof of principle' approach to explore whether the reproductive strategy of multiple-batch spawning constitutes a bet-hedging. We used Atlantic cod (<i>Gadus morhua</i>) as the study species and parameterised an eco-evolutionary model, using empirical data on size-related reproductive and survival traits. To evaluate the fitness benefits of multiple-batch spawning (within a single breeding period), the mechanistic model separately simulated multiple-batch and single-batch spawning populations under temporally varying environments. We followed the arithmetic and geometric mean fitness associated with both strategies and quantified the mean changes in fitness under several environmental stochasticity levels. We found that, by spreading the environmental risk among batches, multiple-batch spawning increases fitness under fluctuating environmental conditions. The multiple-batch spawning trait is, thus, advantageous and acts as a bet-hedging strategy when the environment is exceptionally unpredictable. Our research identifies an analytically flexible, stochastic, life-history modelling approach to explore the fitness consequences of a risk-spreading strategy and elucidates the importance of evolutionary applications to life-history diversity. </span></span></span></span></span></span></span></span></span></span></span></p>

opencc-zeroJun 2021View details →
dryad36/100

Bulk Carbon and Amino Acid nitrogen isotope data from Baltic cod (Gadus morhua) and European flounder (Platichthys flesus) muscle tissue samples from the western and central Baltic Sea

<p><span>Eutrophication, increased temperatures and stratification can lead <span>to massive, filamentous, N<sub>2</sub>-fixing cyanobacterial (FNC) blooms in coastal ecosystems with largely unresolved consequences for the mass and energy supply in pelagic and benthic food webs. Mesozooplankton adapt to not top-down controlled FNC blooms by switching diets from phytoplankton to microzooplankton, resulting in a directly quantifiable increase in its trophic position (TP) from 2.0 (herbivore) to as high as 3.0 (carnivore). If this process in mesozooplankton, we call trophic lengthening, was transferred up to higher trophic levels of a food web, a large loss of energy could result in massive declines of fish biomass. </span></span><span>We used compound-specific nitrogen stable isotope data of amino acids (CSIA) to estimate and compare </span><span>the nitrogen (N) sources and TPs of cod and flounder (mesopredators) from areas</span><span> </span><span>with influence of FNC blooms (central Baltic Sea) and without it (western Baltic Sea)</span><span>. We tested if FNC-caused </span><span>trophic lengthening in mesozooplankton is carried over to fish.</span><span> The TP of cod from the western Baltic, feeding mainly on decapods, was equal to the global mean value (4.1, secondary carnivore). Only cod from the central Baltic, mainly feeding on zooplanktivorous pelagics, had a higher TP (4.8, near-tertiary carnivore), indicating a strong carry-over effect of </span><span>FNC-</span><span>caused trophic lengthening from mesozooplankton. In contrast, the TP of molluscivorous flounder (3.2 ± 0.2 in both areas), associated with the benthic food web, was unaffected by trophic lengthening. This suggests that FNC blooms cause a large loss of energy in zooplanktivorous but not in molluscivorous mesopredators. If FNC blooms continue to detour energy at the base of the pelagic food web, the TP of cod will not return to global mean values and the fish stock not recover. Monitoring the TP of key species can identify fundamental changes in ecosystems and provide useful information for resource management.</span></p>

opencc-zeroFeb 2024View details →
zenodo36/100

Input data and code supporting the cod_v2 population estimates

<p>The <strong><em>model.zip</em></strong> file contains input&nbsp;data and code supporting the&nbsp;cod_v2 population estimates.&nbsp;The file<strong> <em>modelData.RData</em></strong> provides the input data to the JAGS model and the file<em> <strong>modelCode.R</strong></em> contains the source code for the model in the JAGS language. The files can be used to run the model for further assessments and as a starting point for further model development.</p> <p>The data and the model were developed using the statistical software <strong>R version 4.0.2</strong>&nbsp;(https://cran.r-project.org/bin/windows/base/old/4.0.2) and <strong>JAGS 4.3.0</strong> (https://mcmc-jags.sourceforge.io), a program for analysis of Bayesian graphical models using Gibbs sampling, through the R package <strong>runjags 2.2.0</strong> (https://cran.r-project.org/web/packages/runjags).</p>

opencc-by-4.0Nov 2021View details →

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