Find research datasets worth reusing

opencc-by-4.0Jul 2024View details →

Data from "The academic impact of Open Science: a scoping review"

These files include the data from the "The societal impact of Open Science - a scoping review", part of a series of studies conducetd within the PathOS Horizon Europe project on the academic, economic, and societal impacts of Open Science. This study was conducted in two phases. In phase 1 an academic database search was conducted. For phase 2 an automatic snowball search was performed based on results from phase 1 ( and grey literature was searched manually. The upload contains five files: <ol> <li>Main file with extracted information for the 485 studies included in the review ("academic_impact_included_all_data.csv").</li> <li>Excel file documenting the grey literature search ("Grey_Literature_Search.xlsx").</li> <li>R project for the snowball search ("academic_impact_snowball.zip").</li> <li>R project for cleaning data and producing summaries and figures ("academic_impact_stats.zip").</li> <li>Excel file mapping the frascati codes used in file (1) to their textual representations ("Frascati definitions.xlsx")</li> </ol> For more details on the methods see the <a href="https://osf.io/m4rnc">protocol</a> and its <a href="https://osf.io/3b6xj">addendum</a>. For the background, results and discussion see the <a href="../records/7883699">deliverable</a> (reporting on phase 1) and the pre-print.

dryad40/100

Data from: The scope and adaptive value of modulating aggression across breeding stages: Case study in a competitive female songbird

In seasonally breeding animals, costs and benefits of territorial aggression should vary over time; however, little work thus far has directly examined the scope and adaptive value of individual-level plasticity in aggression across breeding stages. We explore these issues using the tree swallow (Tachycineta bicolor), a bird species in which females compete for limited nesting sites before producing a single brood. We measured the aggressiveness of nearly 100 females within three different stages: (1) shortly after territory-establishment, (2) during early incubation, and (3) while caring for young chicks. We used k-means clustering to categorize females into four distinct plasticity 'types' based on the timing, direction, and magnitude of their changes in aggression between stages. We then tested whether plasticity type and stage-specific aggression vary with key performance metrics. Two of the four plasticity types became less aggressive across consecutive breeding stages, consistent with population-level patterns, though these plasticity types largely did not differ from one another in survival or reproductive success. A third type was characterized by high levels of among-stage plasticity; these females, had significantly lower body mass while parenting, tended to hatch fewer eggs, and had the lowest observed overwinter survival rates. A final type exhibited limited plasticity, with moderate to low levels of aggression in all stages; this low plasticity - low aggression phenotype was not associated with any negative effects to performance. These results reveal substantial among-individual variation in behavioral plasticity, which may reflect diverse solutions to trade-offs between current reproduction and future survival.

opencc-zeroMay 2024View details →

opencc-by-4.0May 2023View details →

Source Data for Supplementary Information of "Expanding the substrate scope of PylRS enzymes to include non-⍺-amino acids in vitro and in vivo"

The attached excel file contains the source data for LC-MS traces shown in the Supplementary Information of the paper "Expanding the substrate scope of PylRS enzymes to include non-⍺-amino acids in vitro and in vivo." Each graph is contained in a tab and labeled with the Supplementary Figure number and panel with which it is associated.

opencc-by-4.0Jul 2024View details →

STEMMUS SCOPE emulator train test example data of 2014

<div> <div>The "csv" file contains land-atmosphere variables and latent heat flux (LEtot) simulated by STEMMUS-SCOPE (soil-plant model), version 1.5.0, see GitHub repository <a href="https://github.com/EcoExtreML/STEMMUS_SCOPE" target="_blank" rel="noopener">STEMMUS-SCOPE</a>. The data spreads over 19 Fluxnet sites and for the year 2014 with hourly intervals. For more information see <a href="https://research-software-directory.org/projects/ecoextreml" target="_blank" rel="noopener">EcoExtreML project</a>.</div> <div>This data was used as training data pairs to develop an emulator using a random forests regression algorithm, the "onnx" file. The target variable is "latent heat flux (LEtot)" and features are land-atmosphere variables. For more information about the emulator, see GitHub repository <a href="https://github.com/EcoExtreML/Emulator" target="_blank" rel="noopener">STEMMUS-SCOPE Emulator</a>.</div> <div> </div> <div>The model and data are used to create a tutorial on applying an explainability method, for example, Kernel SHAP using the package <a href="https://dianna.readthedocs.io/en/latest/" target="_blank" rel="noopener">DIANNA</a>.  For more information see <a href="https://www.esciencecenter.nl/projects/deep-insight-and-neural-networks-analysis-dianna/" target="_blank" rel="noopener">Deep Insight and Neural Network Analysis (DIANNA) project</a>.</div> </div>

opencc-by-4.0Oct 2022View details →

Data Set on Content Excerpts from Relevant Literature for a Scoping Review of Evacuation Training Methods in Buildings

This Excel-file contains a set of data from a scoping review on methods for fire evacuation training in buildings. The review follows the PRISMA approach (Transparent Reporting of Systematic Reviews and Meta-Analyses) and systematically identifies 73 sources among scientific literature published between 1997 and 2022. The dataset contains information excerpted through a custom template on the employed training methods and technology, study information, participants, and contents of the discussion of the 73 sources of evidence that were identified in the systematic review process.

opencc-by-4.0Jan 2023View details →

Data Set on the Literature Screening for a Scoping Review of Evacuation Training Methods in Buildings

This data set contains all retrieved literature records of a scoping review on fire evacuation training methods in buildings together with the reasoning for their in- or exclusion in the review.

opencc-by-4.0Jun 2023View details →

Interim data for scoping review on diagnosis, prognosis and treatment of pediatric DoC

These are the data produced by the working group, while evaluating the existing literature on diagnosis, prognosis and treatment of pediatric DoC. Files include the results of the systematic search (3 repetitions), the data input of abstraction forms and QUADAS-2 and PROBAST checklists. A study workflow is also provided.

dryad40/100

Data from: The scope and adaptive value of modulating aggression across breeding stages: Case study in a competitive female songbird

Open the record for dataset details and reuse information.

publicMay 2024View details →

opencc-by-4.0Dec 2019View details →

Additional CPT's Raw Data performed by Istanbul University-Cerrahpasa in scope of LIQUEFACT project (H2020, 700748)

Additional CPT's Raw Data performed by Istanbul University-Cerrahpasa in scope of LIQUEFACT project (H2020, 700748)

2017 SCOPE Gradients Water Column Data

This dataset contains water column data collected via CTD/rosette profiles taken on the SCOPE Gradients 2 cruise in the Northeast Pacific Ocean, averaged at every Niskin bottle trip. The SCOPE-Gradients program is designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems.

2019 SCOPE Gradients Downcast CTD Data

This dataset contains water column data collected via CTD profiles taken on the SCOPE Gradients 3 (KM1906) oceanographic research cruise in the Northeast Pacific Ocean.  These data were collected on the CTD downcast.  The SCOPE-Gradients program is designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems.

2021 SCOPE Gradients Downcast CTD Data

This dataset contains water column data collected via CTD profiles taken on the SCOPE Gradients 4 cruise.  These data were collected on the CTD downcast.  The SCOPE-Gradients program is designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. This dataset was collected on the R/V Thompson during the Gradients 4 cruise which departed from San Diego, CA and ended in Honolulu, HI. A transect was performed on the 140 degree longitude line from roughly 19 degrees N to 2.5 degrees S before heading to Honolulu.

2021 SCOPE Gradients, Water Column Data

This dataset contains water column data collected via CTD/rosette profiles taken on the SCOPE Gradients 4 cruise, averaged at every Niskin bottle trip. The SCOPE-Gradients program is designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems. This dataset was collected on the R/V Thompson during the Gradients 4 cruise which departed from San Diego, CA and ended in Honolulu, HI. A transect was performed on the 140 degree longitude line from roughly 19 degrees N to 2.5 degrees S before heading to Honolulu.

2016 SCOPE Gradients Water Column Data

This dataset contains water column data collected via CTD/rosette profiles taken on the SCOPE Gradients 1 (KOK1606) oceanographic research cruise in the Northeast Pacific Ocean, averaged at every Niskin bottle trip. The SCOPE-Gradients program is designed to test conceptual and mathematical models of biogeochemical organization across the transition zone between different ecosystems.

opencc-zeroMay 2024View details →

dryad36/100

Data from: Changes of Chinese forest-grassland ecotone in geographical scope and landscape structure from 1990 to 2020

Forest-grassland ecotone (FGE) has essential ecological and economic value. Unfortunately, it is impacted greatly by environmental changes and anthropogenic disturbance, and is considered one of the most severely threatened biomes in China. To protect Chinese FGE, identifying its exact boundary and exploring its landscape structure dynamic are badly needed, especially on nationwide scale at one-year temporal resolution. Here, we mapped the annual FGE distribution of China from 1990 to 2020, investigated its changing trends of area, location and landscape patterns, and revealed the underlying driving factors. Our results showed that FGE area over the 31 years totaled 1,011,870 km2, covering about 10.54% of China's land. The FGE area first increased from 1990 and peaked in 1999, and then kept decreasing until 2020. The FGE gravity center has moved accumulatively 590.15 km over the 31 years, with the net moving distance of 228.76 km southwestward. From 1990 to 2020, forest area increased continuously while grassland and cropland area decreased, but these three landscape types had been dominating the FGE. The increase in forest area was largely converted from grassland. The decline in grassland mainly resulted from its conversion into cropland and forest. Meanwhile, the conversion of cropland to grassland supplemented grassland loss to a certain extent. At landscape level, the total area with decreased fragmentation is larger than that with increased fragmentation. Returning Farmland to Grassland Project and land reclamation were primary drivers for changes of fragmentation in the northern and middle part of the FGE, while temperature and precipitation were primary drivers in southern part. Our results will improve the understanding into the dynamic trends of distribution and pattern of FGE at nationwide scale, and thus help to optimize the designing of ecological projects and protective schemes for FGE as a unique and integral biome.

opencc-by-4.0Mar 2019View details →

Scoping review of the term 'genetic identity' - data extraction table

This dataset comes from a systmatic scoping reivew of the term ‘genetic identity’ within different academic discourses. This review systematically identifies all uses of the term ‘genetic identity’ within the academic literature.  Content analysis is used to code and categorize its use, and the emerging discourses are related to disciplinary perspective, year of publication, and geographical setting.

opencc-by-4.0Sep 2024View details →

A scoping review on climate change education - Data

Processed data of the publication a scoping review on climate change education. The file "RelevantArticles_2008-2023_TopicsGeo.csv" contains the DOI of each article and the corresponding results of the topic modelling and the geoparsing. The list of DOIs that includes both relevant and irrelevant paper is provided in the file "output_relevant_irrevelant_August2023.xlsx".  The files "term_weight_2010_gram12.xlsx" and "term_weight_2023_gram12.xlsx" are used for the semantic analysis. The file "data_for_heatmap.csv" and "tsne_df_output.csv" are used for the topic modelling analysis that generates t-sne and heatmaps. The country counts analysis can be done using "data_for_country_counts.csv".

opencc-by-4.0Aug 2021View details →

2017 Microbial Ecology of the Surface Ocean - SCOPE, Water Column Data

This dataset consists of samples taken at various depths in the water column from niskin bottles attached to a CTD rosette on the MESO-SCOPE cruise in 2017. Mesoscale eddies affect the variability of ocean ecosystems through different dynamics, but an exhaustive description of their influence on the plankton community is still missing, partly due to the complex physical-biological interaction taking place inside the eddies. One of the most well known effects of mesoscale eddies is the vertical displacement of water in their interior due to the geostrophic balance with the eddy circular motion. Since eddies of different polarity displace water in opposite directions, their impact on pelagic ecosystems is postulated to be very different. Based on this information, one of the objectives of the MESO-SCOPE expedition was to study a mesoscale dipole, i.e. a system composed of adjacent cyclonic and anticyclonic eddies. The MESO-SCOPE (Microbial Ecology of the Surface Ocean - Simons Collaboration on Ocean Processes and Ecology) expedition collected oceanographic observations in the region north of the Hawaiian Islands with the aim of identifying the impact of mesoscale eddies on the ecosystem of the North Pacific Subtropical Gyre. The expedition was funded by the Simons Collaboration on Ocean Processes and Ecology (SCOPE) and hosted on the research vessel Kilo Moana between June 26 and July 15 2017, leaving from and returning to the port of Honolulu.  Scientists from eight countries, representing eleven SCOPE laboratories, participated in the MESO-SCOPE expedition and contributed their expertise in research areas as ocean biogeochemistry, molecular biology, bio-optics, plankton taxonomy, microbiology, and ecology.

opencc-by-4.0Aug 2021View details →

2018 SCOPE Falkor Cruise Water Column Data

This dataset consists of samples collected from various depths in the water column using niskin bottles attached to a CTD rosette on the 2018 SCOPE-Falkor cruise. The 2018 SCOPE-Falkor Cruise was built on the observations of the SCOPE expeditions conducted during 2015-2017 by looking at diel variability associated with the deep chlorophyll maximum and quantifying the impact of mesoscale eddies on the ecology and functioning of the North Pacific Subtropical Gyre. A unique aspect to the expedition was the use of Long-Range Autonomous Underwater Vehicles which were integrated into the science operations in conjunction with other oceanographic equipment.  The majority of the expedition was located in a cyclonic eddy to the north of the island of Molokai.  The reason for selecting a cyclonic eddy was to better understand the microbial community structure and dynamics associated with the deep chlorophyll maximum in an eddy with negative sea level anomaly. The deep chlorophyll maximum is uplifted by 20 to 40 m in a cyclonic eddy compared to its typical position in the water-column. The expedition was split into two legs in order to facilitate both engineering and scientific research objectives. After sampling a cyclonic eddy during 14 March to 4 April, 2018,  the expedition sampled a large anticyclonic eddy to the northwest in order to augment our increasing understanding of microbial biogeochemistry in eddies with contrasting polarity. During the cruise, the Schmidt Ocean Institute R/V Falkor deployed two Long Range Underwater Vehicles that autonomously tracked and sampled the chlorophyll maximum layer, two Seagliders, a Waveglider, a Wirewalker, and free-drifting sediment trap arrays.