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Dataset results
147 results for “Disease mapping”
Clusters of interactions common between the Parkinson's disease map and the Ageing map
<p>This set of files was generated using the script demonstrating the use of MINERVA Net repository.</p> <p>The script is available under:</p> <p><a href="https://gitlab.lcsb.uni.lu/minerva/api-scripts/-/blob/master/R/API-minervanet.R">https://gitlab.lcsb.uni.lu/minerva/api-scripts/-/blob/master/R/API-minervanet.R</a></p> <p>The diagrams should be opened with the CellDesigner software (<a href="https://www.celldesigner.org/">https://www.celldesigner.org/</a>).</p>
Clinical Pharmacology of p38 MAP Kinase Inhibitor, VX-745, in Mild Cognitive Impairment Due to Alzheimer's Disease (AD) or Mild AD
ClinicalTrials.gov study NCT02423200. IPD Sharing: Not stated. Countries: 1. Publications: 1.
A PET Study of the Effects of p38 MAP Kinase Inhibitor, VX-745, on Amyloid Plaque Load in Alzheimer's Disease (AD)
ClinicalTrials.gov study NCT02423122. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Efficacy and Safety of Anti-MAP Therapy in Adult Crohn's Disease
ClinicalTrials.gov study NCT01951326. IPD Sharing: Not stated. Countries: 10. Publications: 1.
Data from: Complex disease and phenotype mapping in the domestic dog
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Large scale eDNA monitoring of multiple aquatic pathogens as a tool to provide risk maps for wildlife diseases
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Complex feline disease mapping using a dense genotyping array
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Natural disease history of a canine model of oligogenic RPGRIP1-cone-rod dystrophy establishes variable effects of previously and newly mapped modifier loci
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Data from: Association mapping of genetic risk factors for chronic wasting disease in wild deer
Chronic wasting disease (CWD) is a fatal transmissible spongiform encephalopathy affecting North American cervids. We assessed the feasibility of association mapping CWD genetic risk factors in wild white-tailed deer (Odocoileus virginianus) and mule deer (Odocoileus hemionus) using a panel of bovine microsatellite markers from three homologous deer linkage groups predicted to contain candidate genes. These markers had a low cross-species amplification rate (27.9%) and showed weak linkage disequilibrium (<1 cM). Markers near the prion protein and the neurofibromin 1 (NF1) genes were suggestively associated with CWD status in white-tailed deer (P = 0.006) and mule deer (P = 0.02), respectively. This is the first time an association between the NF1 region and CWD has been reported.
Joint quantile disease mapping with application to Malaria and G6PD deficiency
Statistical analysis based on quantile regression methods is more comprehensive, flexible, and less sensitive to outliers when compared to mean regression methods. When the link between different diseases are of interest, joint disease mapping is useful for inferring correlation between them. Most studies study this link through multiple correlated mean regressions. In this paper we propose a joint quantile regression framework for multiple diseases where different quantile levels can be considered. We are motivated by the theorized link between the presence of Malaria and the gene deficiency G6PD, where medical scientist have anecdotally discovered a possible link between high levels of G6PD and lower than expected levels of Malaria initially pointing towards the occurrence of G6PD inhibiting the occurrence of Malaria. This link cannot be investigated with mean regressions and thus the need for flexible joint quantile regression in a disease mapping framework arise. Our joint quantile disease mapping model can be used for linear and non-linear effects of covariates by stochastic splines, since we define it as a latent Gaussian model. We perform Bayesian inference of this model using the INLA framework embedded in the R software package INLA, resulting in a very efficient model even for large datasets. Finally, we illustrate the applicability of the model by analyzing the malaria and G6PD deficiency incidences, jointly, in 21 countries.
Native T1 Mapping by Cardiovascular Magnetic Resonance Imaging in Rare Diseases
ClinicalTrials.gov study NCT03199001. IPD Sharing: NO. Countries: 2. Publications: 5.
T1-mapping by Cardiovascular Magnetic Resonance Imaging to Assess Non-Alcoholic Fatty Liver Disease
ClinicalTrials.gov study NCT04220450. IPD Sharing: NO. Countries: 1. Publications: 1.
Mapping Organ Health Following COVID-19 Disease Due to SARS-CoV-2 Infection
ClinicalTrials.gov study NCT04369807. IPD Sharing: NO. Countries: 1. Publications: 25.
Mapping of End Stage Renal Disease Genetic Susceptibility in African Americans by Admixture Linkage Disequilibrium
ClinicalTrials.gov study NCT00559767. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Epidemiology of Cutaneous Leishmaniasis in Niger, Mali, Togo : Mapping of Clinical Cases, Species, Reservoirs and Vectors of the Disease
ClinicalTrials.gov study NCT06692985. IPD Sharing: UNDECIDED. Countries: 3. Publications: 16.
Mapping Health-related Quality of Life in Pregnant Women With Thyroid Disease.
ClinicalTrials.gov study NCT04167423. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Data from: Association mapping of genetic risk factors for chronic wasting disease in wild deer
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Data from: Association mapping reveals candidate loci for resistance and anemic response to an emerging temperature-driven parasitic disease in a wild salmonid fish
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Joint quantile disease mapping with application to Malaria and G6PD deficiency
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1000 Disease Ontology terms and their Wikidata mappings to 17 mostly Indian languages and English
<p>This dataset contains the result of a SPARQL query run on the <a href="https://query.wikidata.org/">Wikidata Query Service</a> on 13 February 2020 around 22:25 UTC. They are archived here as a means to determine progress with the coverage of disease-related terms in languages other than English, particularly in languages of India.</p> <p>The <a href="https://query.wikidata.org/#%23%20Wikidata%20items%20for%20concepts%20that%20have%20a%20Disease%20Ontology%20ID%20%28P699%29%0A%23%20sorted%20by%20number%20of%20sitelinks%0A%23%20optionally%20with%20their%20Wikidata%20label%20in%20English%0A%23%20optionally%20with%20their%20Wikidata%20label%20in%20Hindi%2C%20Bangla%20and%20Swahili%0A%23%20optionally%20with%20their%20Wikidata%20label%20in%20Marathi%2C%20Telugu%2C%20Eastern%20Punjabi%2C%20Western%20Punjabi%2C%20Gujarathi%2C%20Maithili%2C%20Kannada%2C%20Odia%2C%20Bhojpuri%2C%20Tamil%2C%20Nepali%2C%20Urdu%2C%20Malayalam%2C%20Esperanto%0A%0ASELECT%20DISTINCT%20%3Fitem%20%0A%23%20English%20Wikidata%20label%0A%20%3FLabelEN%0A%0A%23%20%20%20%20English%20Wikipedia%20article%20title%0A%3FPageTitleEN%20%0A%0A%23%20Hindi%2C%20%20%20Bangla%20and%20Swahili%20Wikidata%20labels%0A%3FLabelHI%20%3FLabelBN%20%20%20%20%3FLabelSW%20%0A%0A%23%20Marathi%2C%20%20Telugu%2C%20Eastern%20Punjabi%2C%20Western%20Punjabi%2C%20Gujarathi%2C%20Maithili%2C%20Kannada%2C%20%20%20%20Odia%2C%20Bhojpuri%2C%20%20%20Tamil%2C%20%20Nepali%2C%20%20%20%20Urdu%2C%20Malayalam%2C%20Esperanto%0A%20%3FLabelMR%20%3FLabelTE%20%20%20%20%20%20%20%20%20%3FLabelPA%20%20%20%20%20%20%20%20%3FLabelPNB%20%20%20%3FLabelGU%20%3FLabelMAI%20%3FLabelKN%20%3FLabelOR%20%20%3FLabelBH%20%3FLabelTA%20%3FLabelNE%20%3FLabelUR%20%20%20%3FLabelML%20%20%20%3FLabelEO%0A%0A%3Fsitelinks%20%0A%0AWHERE%20%7B%0A%20%20%3Fitem%20wdt%3AP699%20%5B%5D%20.%20%20%0A%20%20%3Fitem%20wikibase%3Asitelinks%20%3Fsitelinks%20.%0A%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3F%3FLabelEN%20filter%20%28lang%28%3FLabelEN%29%20%3D%20%22en%22%29%20.%20%7D%20%0A%20%20OPTIONAL%20%7B%20%3Farticle%20schema%3Aabout%20%3Fitem%20%3B%20schema%3AisPartOf%20%3Chttps%3A%2F%2Fen.wikipedia.org%2F%3E%20%3B%20%20schema%3Aname%20%3FPageTitleEN%20.%20%7D%0A%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelHI%20filter%20%28lang%28%3FLabelHI%29%20%3D%20%22hi%22%29%20.%20%7D%20%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelBN%20filter%20%28lang%28%3FLabelBN%29%20%3D%20%22bn%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelSW%20filter%20%28lang%28%3FLabelSW%29%20%3D%20%22sw%22%29%20.%20%7D%0A%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelMR%20filter%20%28lang%28%3FLabelMR%29%20%3D%20%22mr%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelTE%20filter%20%28lang%28%3FLabelTE%29%20%3D%20%22te%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelPA%20filter%20%28lang%28%3FLabelPA%29%20%3D%20%22pa%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelPNB%20filter%20%28lang%28%3FLabelPNB%29%20%3D%20%22pnb%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelGU%20filter%20%28lang%28%3FLabelGU%29%20%3D%20%22gu%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelMAI%20filter%20%28lang%28%3FLabelMAI%29%20%3D%20%22mai%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelKN%20filter%20%28lang%28%3FLabelKN%29%20%3D%20%22kn%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelOR%20filter%20%28lang%28%3FLabelOR%29%20%3D%20%22or%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelBH%20filter%20%28lang%28%3FLabelBH%29%20%3D%20%22bh%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelTA%20filter%20%28lang%28%3FLabelTA%29%20%3D%20%22ta%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelNE%20filter%20%28lang%28%3FLabelNE%29%20%3D%20%22ne%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelUR%20filter%20%28lang%28%3FLabelUR%29%20%3D%20%22ur%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelML%20filter%20%28lang%28%3FLabelML%29%20%3D%20%22ml%22%29%20.%20%7D%0A%20%20OPTIONAL%20%7B%20%3Fitem%20rdfs%3Alabel%20%3FLabelEO%20filter%20%28lang%28%3FLabelEO%29%20%3D%20%22eo%22%29%20.%20%7D%0A%7D%0AORDER%20BY%20DESC%28%3Fsitelinks%29%0ALIMIT%201000">SPARQL query</a></p> <ul> <li>was for <ul> <li> <p>Wikidata items for concepts that have a <a href="https://www.wikidata.org/wiki/Property:P699">Disease Ontology ID (P699)</a></p> <ul> <li> <p>sorted by number of sitelinks</p> </li> <li> <p>optionally with their Wikidata label in English</p> </li> <li> <p>optionally with their Wikipedia article title in English</p> </li> <li> <p>optionally with their Wikidata label in Hindi, Bangla and Swahili</p> </li> <li> <p>optionally with their Wikidata label in Marathi, Telugu, Eastern Punjabi, Western Punjabi, Gujarathi, Maithili, Kannada, Odia, Bhojpuri, Tamil, Nepali, Urdu, Malayalam, Esperanto</p> </li> </ul> </li> </ul> </li> <li>is contained in the file SPARQL.txt,</li> </ul> <p>whereas the results are available in several formats, as provided by the Wikidata Query Service:</p> <ul> <li>query.csv</li> <li>query.tsv<br> query.html</li> <li>query.json.txt (Zenodo produced an error upon trying to upload the file as query.json, so I renamed it, which worked fine).</li> </ul> <p>A simplified version of the SPARQL query can also be fed into the TABernacle tool that <a href="https://tools.wmflabs.org/tabernacle/#/tab/sparql/SELECT%20%09%0A%09%3Fitem%0AWHERE%20%09%0A%7B%0A%20%20%3Fitem%20wdt%3AP699%20%5B%5D%20.%20%20%0A%20%20%3Fitem%20wikibase%3Asitelinks%20%3Fsitelinks%20.%0A%0A%7D%0AORDER%20BY%20DESC(%3Fsitelinks)/Len%2Chi%2Cbn%2Csw%2Cmr%2Cte%2Cpa%2Cpnb%2Cgu%2Cmai%2Ckn%2Cor%2Cbh%2Cta%2Cne%2Cur%2Cml%2Ceo">represents</a> the live data in a way that facilitates editing the missing pieces.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.