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41 results for “Hypoplectrus”
Hypoplectrus guttavarius decontaminated FSCR
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Hypoplectrus nigricans decontaminated FSCR
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Hypoplectrus indigo SPAdes preassembly
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Hypoplectrus aberrans SPAdes preassembly
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Hypoplectrus indigo decontaminated FSCR
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Hypoplectrus indigo decontaminated gx
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Hypoplectrus guttavarius decontaminated gx
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Hypoplectrus chlorurus decontaminated gx
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Hypoplectrus randallorum decontaminated gx
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Hypoplectrus aberrans decontaminated gx
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Hypoplectrus providencianus decontaminated gx
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Hypoplectrus nigricans decontaminated gx
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Data from: Population genomics of local adaptation versus speciation in coral reef fishes (Hypoplectrus spp, Serranidae)
Are the population genomic patterns underlying local adaptation and the early stages of speciation similar? Addressing this question requires a system in which i. local adaptation and the early stages of speciation can be clearly identified and distinguished, ii. the amount of genetic divergence driven by the two processes is similar, and iii. comparisons can be repeated both taxonomically (for local adaptation) and geographically (for speciation). Here, we report just such a situation in the hamlets (Hypoplectrus spp), brightly colored reef fishes from the wider Caribbean. Close to 100,000 SNPs genotyped in 126 individuals from three sympatric species sampled in three repeated populations provide genome-wide levels of divergence that are comparable among allopatric populations (Fst estimate = 0.0042) and sympatric species (Fst estimate = 0.0038). Population genetic, clustering and phylogenetic analyses reveal very similar patterns for local adaptation and speciation, with a large fraction of the genome undifferentiated (Fst estimate ≈ 0), a very small proportion of Fst outlier loci (0.05-0.07%), and remarkably few repeated outliers (1-3). Nevertheless, different loci appear to be involved in the two processes in Hypoplectrus, with only 7% of the most differentiated SNPs and outliers shared between populations and species comparisons. In particular, a tropomyosin (Tpm4) and a previously identified hox (HoxCa) locus emerge as candidate loci (repeated outliers) for local adaptation and speciation, respectively. We conclude that marine populations may be locally adapted notwithstanding shallow levels of genetic divergence, and that from a population genomic perspective this process does not appear to differ fundamentally from the early stages of speciation.
Data from: The evolution of microendemism in a reef fish (Hypoplectrus maya)
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Data from: Population genomics of local adaptation versus speciation in coral reef fishes (Hypoplectrus spp, Serranidae)
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Data from: Genomic atolls of differentiation in coral reef fishes (Hypoplectrus spp, Serranidae)
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FIGURE 7. Hypoplectrus randallorum. Holotype MCZ 169250 in A review of the Caribbean hamlets (Serranidae, Hypoplectrus) with description of two new species
FIGURE 7. Hypoplectrus randallorum. Holotype MCZ 169250, preserved specimen.
FIGURE 4. Hypoplectrus maya, holotype MCZ 169196 in A review of the Caribbean hamlets (Serranidae, Hypoplectrus) with description of two new species
FIGURE 4. Hypoplectrus maya, holotype MCZ 169196, preserved specimen.
FIGURE 4 in A review of 263 years of taxonomic research on Hypoplectrus (Perciformes: Serranidae), with a redescription of Hypoplectrus affinis (Poey, 1861)
FIGURE 4. Photographs and densities of all the species observed in Bocas del Toro (Panama). Densities from 50 transects covering 20,000 m2 of reef. From upper left to lower right: Hypoplectrus puella, H. nigricans, H. unicolor, H. affinis, H. aberrans, H. gummigutta, H. randallorum, H. guttavarius and H. providencianus. Hypoplectrus guttavarius and H. providencianus were not observed within the transects but one individual of each species was obseerved in Bocas del Toro between 2004 and 2013. Note that H. unicolor, H. aberrans, H. gummigutta, H. randallorum and H. guttavarius have visible implant elastomer tags in the base of the caudal fin. All photographs from Bocas del Toro and by OP.
FIGURE 5 in A review of 263 years of taxonomic research on Hypoplectrus (Perciformes: Serranidae), with a redescription of Hypoplectrus affinis (Poey, 1861)
FIGURE 5. Standard lengths of the hamlets from Bocas del Toro (Panama). Hypoplectrus affinis is significantly larger than H. puella and H. nigricans. n: sample size, open circles: maximum standard length, *: significant difference at the 0.05 a level from one-way ANOVA analysis.
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