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FIGURE 2 in Two Hypoxylon species from Yunnan Province based on morphological and molecular characters
FIGURE 2. Hypoxylon baihualingense (FCATAS477, Holotype). a Asci in water. b matured asci in Melzer's reagent. c immatured asci in Melzer's reagent. d Ascospore with germ slit in KOH. e Ascospore with germ slit in water. f Ascospore in KOH with dehiscent perispore showing conspicuous ornamentation. g Free perispores in KOH. h Ascospores in water. i Ascospores in KOH with dehiscent perispore. Scale is indicated by bars (a = 20 μm; b,c = 10 μm; d-i = 5 μm).
Hypoxylon lenormandii SPAdes preassembly
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Hypoxylon subgilvum SPAdes preassembly
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FIGURE 2 in Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China
FIGURE 2. Hypoxylon zhaotongensis (GMB 1373, holotype). a Stromata on dead Bamboo. b Stromatal surface and ostioles. c–e Vertical sections of stromata. f Peridium. g Branching paraphyses. h Pigments of stromata in 10% KOH solution. i "J+" apical apparatus. j–n Asci in water. o Ascus in Melzer's reagent. p–q Ascospores. r Ascospore showing germ slit. s, t Cultures on PDA from above and below. Scale bars: b–c = 100 μm; d = 250 μm; e = 300 μm; f, g, i–m, o–q = 20 μm; n = 30 μm; r = 15 μm.
FIGURE 1 in Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China
FIGURE 1. Phylogenetic tree derived from the best scoring RAxML analysis based on combined datasets (LSU–ITS–RPB2–β-tubulin). The tree is rooted to Xylaria arbuscula (CBS 126415), Xylaria hypoxylon (CBS 122620), Graphostroma platystomum (CBS 270.87) and Natonodosa speciosa (CLM-RV86). Bootstrap values for maximum likelihood (MLBP) and Bayesian posterior probabilities (BYPP) equal to or greater than 50% and 0.95, are given at the respective branches. Hyphen (-) means a value lower than 50 % (BS) or 0.95 (PP). Cultures from the holotype and epitype specimens are labeled as T and ET, respectively. New isolates are labeled in bold.
FIGURE 1 in Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China
FIGURE 1. (Continued) Phylogenetic tree derived from the best scoring RAxML analysis based on combined datasets (LSU–ITS–RPB2– β-tubulin).
Figure 7 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 7 Illustration of antagonist test by dual culture technique of Hypoxlon spp. and Hymenoscyphus fraxineus on barley-malt agar in 9-cm diam. plates A dual culture of H. rubiginosum (MUCL 47152) against Hym. fraxineus (STMA 18166) after 1 wk of incubation B dual culture of H. rubiginosum (MUCL 47152) against Hym. fraxineus (STMA 18166) after 2 wk of incubation C dual culture of H. rubiginosum (MUCL 47152) against Hym. fraxineus (STMA 18166) after 3 wk of incubation D dual culture of H. rubiginosum (MUCL 47152) against Hym. fraxineus (STMA 18166) after 4 wk of incubation E–H (Hypoxylon aff. rubiginosumMUCL 57724) against Hym. fraxineus after 1, 2, 3, 4 wk I–LH. texense (DSM 107933) against Hym. fraxineus after 1, 2, 3, 4 wk M–PH. guilanense (MUCL 57726) against Hym. fraxineus after 1, 2, 3, 4 wk.
Figure 4 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 4 Hypoxylon aff. rubiginosum (GUM 1587) A, B stromatal habit C close-up view of stromatal surface, with stromatal pigments in 10% KOHD stroma in section showing perithecia and ostioles E mature and immature asci in water F ascus in water G ascus in Melzer's reagent H ascus tip in Melzer's reagent I ascospores in 10% KOH with dehiscent perispore J ascospore in water, with germ-slit K ascospore under SEM. Scale bars: 5 mm (A, B); 1 mm (C); 0.5 mm (D); 20 µm (E–G); 10 µm (H–J); 2 µm (K).
Figure 11 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 11 HPLC-UV chromatograms at 210 nm from mono cultural barley-malt agar extracts of MUCL 47152 (H. rubiginosum), STMA 18166 (Hym. fraxineus), STMA 13090 (H. fuscum) and one dual culture experiment thereof. UV/Vis spectra are shown for phomopsidin (5), 10-hydroxyphomopsidin (6), orthosporin (9), daldinone B (10), 1,8-dimethoxynaphthalene (11), daldinin F (12), 5–methylmellein (13), viridiol (14) and an unidentifiable compound (UC 6) after comparison of data with internal databases. The UV signal of UC 6 was enhanced in the dual culture extract.
Figure 6 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 6 Hypoxylon aff. rubiginosum (GUM 1588) A stromatal habit B close-up view of stromatal surface, with stromatal pigments in 10% KOHC section of stroma showing perithecia and ostioles D ascus in Melzer's reagent E ascospores in 10% KOH with dehiscent perispore. Scale bars: 2.5 mm (A); 0.5 mm (B, C); 20 µm (D); 10 µm (E).
Figure 5 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 5 Culture and anamorphic structures of Hypoxylon aff. rubiginosum (GUM 1587) on OAA, B surface of colony after 1 and 8 wk of incubation (respectively, left to right) C–G general view of anamorph structure with virgariella-like branching patterns H, I conidiogenous cells and immature conidia J mature conidia. Scale bars: 20 µm (C–G); 10 µm (H–J).
Figure 3 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 3 Hypoxylon rubiginosum (GUM 1586) A, B stromatal habit C close-up view of stromatal surface D close-up view of stromatal surface, with stromatal pigments in 10% KOHE ascospores in 10% KOH with dehiscent perispore F mature and immature asci in water G immature ascus in water H mature ascus in water I ascus in Melzer's reagent J ascospores in water K ascus tip in Melzer's reagent. Scale bars: 2 cm (A); 1 cm (B); 4 mm (C); 2 mm (D); 10 µm (E); 20 µm (F–I), 10 µm (J, K).
Figure 10 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 10 HPLC-UV profiles at 210 nm derived from barley-malt agar (A–C, E) and stromal (E) extracts and compound standard (F). UV/Vis spectra are shown for identified compounds in mono- and dual culture (C) experiments of STMA 18166 (Hym. fraxineus, A) and DSM 107933 (H. texense, B; UC 2, 4 – unknown compounds); stromal metabolites (4 – mitorubrinol; URg – unknown rubiginosin A derivative; 3 – rubiginosin A; 2 – mitorubrinol acetate; 7 – mitorubrin; UC2 – Unknown compound 2 of GLM-F116101 (H. texense, D), and ... ESI mass spectra of 8 in positive and negative modes... of 8 8 (rickiol A, F) identified in the mono culture extract of MUCL 54624 (H. rubiginosum, E).
Figure 2 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 2 Hypoxylon guilanense (Holotype GUM 989) A stromatal habit B close-up view of stromatal surface, with stromatal pigments in 10% KOHC, H, I ascospores in water, with germ-slits D, E ascospores in 10% KOH with dehiscent perispore F, G ascospore under SEMJ, K culture on 9 cm OA plates after 1 and 3 wk of incubation (left to right). Scale bars: 2.5 mm (A), 1 mm (B); 10 µm (C–E); 2 µm (F, G); 10 µm (H, I).
Figure 1 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 1 Phylogram of the best ML trees (lnL = −63870.651550) revealed by RAxML from an analysis of the combined ITS–LSU–rpb2–tub2 matrix of selected Xylariales. Strains in bold were sequenced in the current study. ML and MP bootstrap support above 50% are given at the first and second positions, respectively, above or below the branches.
Figure 9 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 9 HPLC-UV profiles at 210 nm derived from stromal extracts of strains H. rubiginosum (GUM 1586), H. guilanense (from holotype) and Hypoxylon aff. rubiginosumGUM 1587 and GUM 1588. UV/Vis spectra are shown for orsellinic acid (1), mitorubrinol acetate (2), rubiginosin A (3), an unknown rubiginosin A – like derivative (URg) and rubiginosin – like derivatives (UC 2 and UC 3). ESI mass spectra are shown for compounds URg and 2.
Figure 8 from: Pourmoghaddam MJ, Lambert C, Surup F, Khodaparast SA, Krisai-Greilhuber I, Voglmayr H, Stadler M (2020) Discovery of a new species of the Hypoxylon rubiginosum complex from Iran and antagonistic activities of Hypoxylon spp. against the Ash Dieback pathogen, Hymenoscyphus fraxineus, in dual culture. MycoKeys 66: 105-133. https://doi.org/10.3897/mycokeys.66.50946
Figure 8 Chemical structures of discussed secondary metabolites. Orsellinic acid (1); mitorubrinol acetate (2); rubiginosin A (3); mitorubrinol (4); phomopsidin (5); 10-hydroxyphomopsidin (6); mitorubrin (7); rickiol A (8); orthosporin (9); daldinone B (10); 1,8-dimethoxynaphthalene (11); daldinin F (12); 5-methyl mellein (13); viridiol (14).
Fig. 1. Rickenyl A–E in Rickenyls A-E, antioxidative terphenyls from the fungus Hypoxylon rickii (Xylariaceae, Ascomycota)
Fig. 1. Rickenyl A–E (1–5) isolated from a single cultivation of the fungus Hypoxylon rickii.
Fig. 1. Terpenoids 1–10 isolated from a in Botryane, noreudesmane and abietane terpenoids from the ascomycete Hypoxylon rickii
Fig. 1. Terpenoids 1–10 isolated from a single cultivation of the fungus Hypoxylon rickii.
TABLE 1 in Taxonomy and phylogeny of Hypoxylon zhaotongensis sp. nov. (Hypoxylaceae, Xylariales), a bambusicolous fungus from Yunnan, China
<p><b>TABLE 1.</b> Names, strain numbers, and corresponding GenBank accession numbers of the taxa used in this study. Cultures from holotype and epitype specimens are labeled as T and ET respectively. Species highlighted in bold were derived from this study. “/” means sequences data are unavailable in the GenBank database.</p><table><tbody><tr><th></th><th></th><th></th><th><b>GenBank accession numbers</b></th><th></th></tr></tbody><tbody><tr><th><b>Species name</b></th><td><b>Strain numbers</b></td><td><b>Types</b></td><td></td><td></td><td></td><td></td></tr><tr><th></th><td></td><td></td><td><b>ITS</b></td><td><b>LSU</b></td><td><i>RPB2</i></td><td><i>β-tubulin</i></td></tr><tr><th><i>Annulohypoxylon annulatum</i></th><td>CBS 140775</td><td>ET</td><td>KY610418</td><td>KY610418</td><td>KY624263</td><td>KX376353</td></tr><tr><th><i>Annulohypoxylon michelianum</i></th><td>CBS 119993</td><td></td><td>KX376320</td><td>KY610423</td><td>KY624234</td><td>KX271239</td></tr><tr><th><i>Annulohypoxylon truncatum</i></th><td>CBS 140778</td><td>ET</td><td>KY610419</td><td>KY610419</td><td>KY624277</td><td>KX376352</td></tr><tr><th><i>Daldinia bambusicola</i></th><td>CBS 122872</td><td>T</td><td>KY610385</td><td>KY610431</td><td>KY624241</td><td>AY951688</td></tr><tr><th><i>Daldinia childiae</i></th><td>CBS 122881</td><td>T</td><td>KU683757</td><td>MH874773</td><td>KU684290</td><td>KU684129</td></tr><tr><th><i>Daldinia concentrica</i></th><td>CBS 113277</td><td></td><td>AY616683</td><td>KY610434</td><td>KY624243</td><td>KC977274</td></tr><tr><th><i>Daldinia dennisii</i></th><td>CBS 114741</td><td>T</td><td>JX658477</td><td>KY610435</td><td>KY624244</td><td>KC977262</td></tr><tr><th><i>Daldinia eschscholtzii</i></th><td>MUCL 45435</td><td></td><td>JX658484</td><td>KY610437</td><td>KY624246</td><td>KC977266</td></tr><tr><th><i>Daldinia petriniae</i></th><td>MUCL 49214</td><td>ET</td><td>AM749937</td><td>KY610439</td><td>KY624248</td><td>KC977261</td></tr><tr><th><i>Daldinia placentiformis</i></th><td>MUCL 47603</td><td></td><td>AM749921</td><td>KY610440</td><td>KY624249</td><td>KC977278</td></tr><tr><th><i>Daldinia vernicosa</i></th><td>CBS 119316</td><td>ET</td><td>KY610395</td><td>KY610442</td><td>KY624252</td><td>KC977260</td></tr><tr><th><i>Durotheca rogersii</i></th><td>YMJ 92031201</td><td></td><td>EF026127</td><td>/</td><td>JX507794</td><td>EF025612</td></tr><tr><th><i>Durotheca comedens</i></th><td>YMJ 90071615</td><td>T</td><td>EF026128</td><td>/</td><td>JX507793</td><td>EF025613</td></tr><tr><th><b>Species name</b></th><td><b>Strain numbers</b></td><td><b>Types</b></td><td></td><td></td><td></td><td></td></tr><tr><th></th><td></td><td></td><td><b>ITS</b></td><td><b>LSU</b></td><td><i>RPB2</i></td><td><i>β-tubulin</i></td></tr><tr><th><i>Durotheca crateriformis</i></th><td>GMBC0205</td><td>T</td><td>MH645426</td><td>MH645425</td><td>MH645427</td><td>MH049441</td></tr><tr><th><i>Durotheca guizhouensis</i></th><td>GMBC0065</td><td>T</td><td>MH645423</td><td>MH645421</td><td>MH645422</td><td>MH049439</td></tr><tr><th><i>Durotheca rogersii</i></th><td>GMBC0204</td><td></td><td>MH645433</td><td>MH645434</td><td>MH645435</td><td>MH049449</td></tr><tr><th><i>Graphostroma platystomum</i></th><td>CBS 270.87</td><td>T</td><td>JX658535</td><td>DQ836906</td><td>KY624296</td><td>HG934108</td></tr><tr><th><i>Hypomontagnella barbarensis</i></th><td>STMA 14081</td><td>T</td><td>MK131720</td><td>MK131718</td><td>MK135891</td><td>MK135893</td></tr><tr><th><i>Hypomontagnella monticulosa</i></th><td>MUCL 54604</td><td></td><td>KY610404</td><td>KY610487</td><td>KY624305</td><td>KX271273</td></tr><tr><th><i>Hypomontagnella submonticulosa</i></th><td>CBS 115280</td><td></td><td>KC968923</td><td>KY610457</td><td>KY624226</td><td>KC977267</td></tr><tr><th><i>Hypoxylon addis</i></th><td>MUCL 52797</td><td>T</td><td>KC968931</td><td>ON954141</td><td>OP251037</td><td>KC977287</td></tr><tr><th><i>Hypoxylon aveirense</i></th><td>MUM 19.40</td><td>T</td><td>MN053021</td><td>ON954142</td><td>OP251028</td><td>MN066636</td></tr><tr><th><i>Hypoxylon baruense</i></th><td>UCH9545</td><td>T</td><td>MN056428</td><td>ON954143</td><td>/</td><td>MK908142</td></tr><tr><th><i>Hypoxylon canariense</i></th><td>MUCL 47224</td><td></td><td>ON792787</td><td>ON954140</td><td>OP251029</td><td>ON813073</td></tr><tr><th><i>Hypoxylon carneum</i></th><td>MUCL 54177</td><td></td><td>KY610400</td><td>KY610480</td><td>KY624297</td><td>KX271270</td></tr><tr><th><i>Hypoxylon cercidicola</i></th><td>CBS 119009</td><td></td><td>KC968908</td><td>KY610444</td><td>KY624254</td><td>KC977263</td></tr><tr><th><i>Hypoxylon chionostomum</i></th><td>STMA 14060</td><td></td><td>KU604563</td><td>ON954144</td><td>OP251030</td><td>ON813072</td></tr><tr><th><i>Hypoxylon chrysalidosporum</i></th><td>FCATAS2710</td><td>T</td><td>OL467294</td><td>OL615106</td><td>OL584222</td><td>OL584229</td></tr><tr><th><i>Hypoxylon crocopeplum</i></th><td>CBS 119004</td><td></td><td>KC968907</td><td>KY610445</td><td>KY624255</td><td>KC977268</td></tr><tr><th><i>Hypoxylon cyclobalanopsidis</i></th><td>FCATAS2714</td><td>T</td><td>OL467298</td><td>OL615108</td><td>OL584225</td><td>OL584232</td></tr><tr><th><i>Hypoxylon erythrostroma</i></th><td>MUCL 53759</td><td></td><td>KC968910</td><td>ON954154</td><td>OP251031</td><td>KC977296</td></tr><tr><th><i>Hypoxylon eurasiaticum</i></th><td>MUCL 57720</td><td>T</td><td>MW367851</td><td>/</td><td>MW373852</td><td>MW373861</td></tr><tr><th><i>Hypoxylon fendleri</i></th><td>MUCL 54792</td><td></td><td>KF234421</td><td>KY610481</td><td>KY624298</td><td>KF300547</td></tr><tr><th><i>Hypoxylon ferrugineum</i></th><td>CBS 141259</td><td></td><td>KX090079</td><td>/</td><td>/</td><td>KX090080</td></tr><tr><th><i>Hypoxylon fragiforme</i></th><td>MUCL 51264</td><td>ET</td><td>KC477229</td><td>KM186295</td><td>MK887342</td><td>KX271282</td></tr><tr><th><i>Hypoxylon fuscoides</i></th><td>MUCL 52670</td><td>T</td><td>ON792789</td><td>ON954145</td><td>OP251038</td><td>ON813076</td></tr><tr><th><i>Hypoxylon fuscum</i></th><td>CBS 113049</td><td>ET</td><td>KY610401</td><td>KY610482</td><td>KY624299</td><td>KX271271</td></tr><tr><th><i>Hypoxylon gibriacense</i></th><td>MUCL 52698</td><td>T</td><td>KC968930</td><td>ON954146</td><td>OP251026</td><td>ON813074</td></tr><tr><th><i>Hypoxylon griseobrunneum</i></th><td>CBS 331.73</td><td>T</td><td>KY610402</td><td>KY610483</td><td>KY624300</td><td>KC977303</td></tr><tr><th><i>Hypoxylon guilanense</i></th><td>MUCL 57726</td><td>T</td><td>MT214997</td><td>MT214992</td><td>MT212235</td><td>MT212239</td></tr><tr><th><i>Hypoxylon haematostroma</i></th><td>MUCL 53301</td><td>ET</td><td>KC968911</td><td>KY610484</td><td>KY624301</td><td>KC977291</td></tr><tr><th><i>Hypoxylon hainanense</i></th><td>FCATAS2712</td><td>T</td><td>OL467296</td><td>OL616132</td><td>OL584224</td><td>OL584231</td></tr><tr><th><i>Hypoxylon hinnuleum</i></th><td>ATCC 36255,MUCL 3621</td><td>T</td><td>MK287537</td><td>MK287549</td><td>MK287562</td><td>MK287575</td></tr><tr><th><i>Hypoxylon hongheensis</i></th><td>KUMCC 21-0452</td><td></td><td>OM001333</td><td>OM001334</td><td>ON392008</td><td>ON468655</td></tr><tr><th><i>Hypoxylon hongheensis</i></th><td>HKAS 122663</td><td>T</td><td>OM001336</td><td>OM001339</td><td>ON392009</td><td>ON468656</td></tr><tr><th><i>Hypoxylon howeanum</i></th><td>MUCL 47599</td><td></td><td>AM749928</td><td>KY610448</td><td>KY624258</td><td>KC977277</td></tr><tr><th><i>Hypoxylon hypomiltum</i></th><td>MUCL 51845</td><td></td><td>KY610403</td><td>KY610449</td><td>KY624302</td><td>KX271249</td></tr><tr><th><b>Species name</b></th><td><b>Strain numbers</b></td><td><b>Types</b></td><td></td><td></td><td></td><td></td></tr><tr><th></th><td></td><td></td><td><b>ITS</b></td><td><b>LSU</b></td><td><i>RPB2</i></td><td><i>β-tubulin</i></td></tr><tr><th><i>Hypoxylon invadens</i></th><td>MUCL 51475</td><td>T</td><td>MT809133</td><td>MT809132</td><td>MT813037</td><td>MT813038</td></tr><tr><th><i>Hypoxylon investiens</i></th><td>CBS 118183</td><td></td><td>KC968925</td><td>KY610450</td><td>KY624259</td><td>KC977270</td></tr><tr><th><i>Hypoxylon isabellinum</i></th><td>MUCL 53308</td><td>T</td><td>KC968935</td><td>/</td><td>OP251032</td><td>KC977295</td></tr><tr><th><i>Hypoxylon laschii</i></th><td>MUCL 52796</td><td></td><td>JX658525</td><td>/</td><td>OP251027</td><td>ON813075</td></tr><tr><th><i>Hypoxylon lateripigmentum</i></th><td>MUCL 53304</td><td>T</td><td>KC968933</td><td>KY610486</td><td>KY624304</td><td>KC977290</td></tr><tr><th><i>Hypoxylon lechatii</i></th><td>MUCL 54609</td><td></td><td>KF923407</td><td>/</td><td>OP251033</td><td>KF923405</td></tr><tr><th><i>Hypoxylon lenormandii</i></th><td>CBS 119003</td><td></td><td>KC968943</td><td>KY610452</td><td>KY624261</td><td>KC977273</td></tr><tr><th><i>Hypoxylon lienhwacheense</i></th><td>MFLUCC14-1231</td><td></td><td>KU604558</td><td>MK287550</td><td>MK287563</td><td>KU159522</td></tr><tr><th><i>Hypoxylon lividipigmentum</i></th><td>STMA14045</td><td></td><td>ON792788</td><td>/</td><td>/</td><td>ON813077</td></tr><tr><th><i>Hypoxylon lividipigmentum</i></th><td>BCRC 34077</td><td></td><td>JN979433</td><td>/</td><td>/</td><td>AY951735</td></tr><tr><th><i>Hypoxylon macrocarpum</i></th><td>CBS 119012</td><td></td><td>ON792785</td><td>/</td><td>OP251034</td><td>ON813071</td></tr><tr><th><i>Hypoxylon munkii</i></th><td>MUCL 53315</td><td></td><td>KC968912</td><td>/</td><td>OP251035</td><td>KC977294</td></tr><tr><th><i>Hypoxylon musceum</i></th><td>MUCL 53765</td><td></td><td>KC968926</td><td>KY610488</td><td>KY624306</td><td>KC977280</td></tr><tr><th><i>Hypoxylon ochraceum</i></th><td>MUCL 54625</td><td>ET</td><td>KC968937</td><td>/</td><td>KY624271</td><td>KC977300</td></tr><tr><th><i>Hypoxylon olivaceopigmentum</i></th><td>DSM 107924</td><td>T</td><td>MK287530</td><td>MK287542</td><td>MK287555</td><td>MK287568</td></tr><tr><th><i>Hypoxylon perforatum</i></th><td>CBS115281</td><td></td><td>KY610391</td><td>KY610455</td><td>KY624224</td><td>KX271250</td></tr><tr><th><i>Hypoxylon petriniae</i></th><td>CBS 114746</td><td>T</td><td>KY610405</td><td>KY610491</td><td>KY624279</td><td>KX271274</td></tr><tr><th><i>Hypoxylon pilgerianum</i></th><td>STMA 13455</td><td></td><td>KY610412</td><td>KY610412</td><td>KY624308</td><td>KY624315</td></tr><tr><th><i>Hypoxylon porphyreum</i></th><td>CBS 119022</td><td></td><td>KC968921</td><td>KY610456</td><td>KY624225</td><td>KC977264</td></tr><tr><th><i>Hypoxylon pseudofuscum</i></th><td>DSM112038</td><td>T</td><td>MW367857</td><td>MW367848</td><td>MW373858</td><td>MW373867</td></tr><tr><th><i>Hypoxylon pulicicidum</i></th><td>CBS 122622</td><td>T</td><td>JX183075</td><td>KY610492</td><td>KY624280</td><td>JX183072</td></tr><tr><th><i>Hypoxylon rickii</i></th><td>MUCL 53309</td><td>ET</td><td>KC968932</td><td>KY610416</td><td>KY624281</td><td>KC977288</td></tr><tr><th><i>Hypoxylon rubiginosum</i></th><td>MUCL 52887</td><td>ET</td><td>KC477232</td><td>KY610469</td><td>KY624266</td><td>KY624311</td></tr><tr><th><i>Hypoxylon samuelsii</i></th><td>MUCL 51843</td><td>ET</td><td>KC968916</td><td>KY610466</td><td>KY624269</td><td>KC977286</td></tr><tr><th><i>Hypoxylon sporistriatatunicum</i></th><td>UCH9542</td><td>T</td><td>MN056426</td><td>/</td><td>OP251036</td><td>MK908140</td></tr><tr><th><i>Hypoxylon subticinense</i></th><td>MUCL 53752</td><td></td><td>KC968913</td><td>/</td><td>/</td><td>KC977297</td></tr><tr><th><i>Hypoxylon texense</i></th><td>DSM 107933</td><td>T</td><td>MK287536</td><td>MK287548</td><td>MK287561</td><td>MK287574</td></tr><tr><th><i>Hypoxylon ticinense</i></th><td>CBS 115271</td><td></td><td>JQ009317</td><td>KY610471</td><td>KY624272</td><td>AY951757</td></tr><tr><th><i>Hypoxylon trugodes</i></th><td>MUCL 54794</td><td>ET</td><td>KF234422</td><td>KY610493</td><td>KY624282</td><td>KF300548</td></tr><tr><th><i>Hypoxylon vogesiacum</i></th><td>CBS 115273</td><td></td><td>KC968920</td><td>KY610417</td><td>KY624283</td><td>KX271275</td></tr><tr><th><i>Hypoxylon wuzhishanense</i></th><td>FCATAS2708</td><td>T</td><td>OL467292</td><td>OL615104</td><td>OL584220</td><td>OL584227</td></tr><tr><th><i>Hypoxylon zhaotongensis</i></th><td><b>GMBCC1168</b></td><td><b>T</b></td><td><b>OP597690</b></td><td><b>OP598100</b></td><td><b>OP615662</b></td><td><b>OP615660</b></td></tr><tr><th><i>Hypoxylon zhaotongensis</i></th><td><b>GMBCC1157</b></td><td></td><td><b>OP597691</b></td><td><b>OP598101</b></td><td><b>OP615663</b></td><td><b>OP615661</b></td></tr><tr><th><i>Jackrogersella cohaerens</i></th><td>CBS 119126</td><td></td><td>KY610396</td><td>KY610497</td><td>KY624270</td><td>KY624314</td></tr><tr><th><b>Species name</b></th><td><b>Strain numbers</b></td><td><b>Types</b></td><td></td><td></td><td></td><td></td></tr><tr><th></th><td></td><td></td><td><b>ITS</b></td><td><b>LSU</b></td><td><i>RPB2</i></td><td><i>β-tubulin</i></td></tr><tr><th><i>Jackrogersella multiformis</i></th><td>CBS 119016</td><td>ET</td><td>KC477234</td><td>KY610473</td><td>KY624290</td><td>KX271262</td></tr><tr><th><i>Natonodosa speciosa</i></th><td>CLM-RV86</td><td>T</td><td>MF380435</td><td>MF380435</td><td>MH745150</td><td>/</td></tr><tr><th><i>Parahypoxylon papillatum comb. nov.</i></th><td>ATCC 58729</td><td>T</td><td>KC968919</td><td>KY610454</td><td>KY624223</td><td>KC977258</td></tr><tr><th><i>Parahypoxylon ruwenzoriense sp. nov.</i></th><td>MUCL51392</td><td>T</td><td>ON792786</td><td>/</td><td>OP251039</td><td>ON813078</td></tr><tr><th><i>Pyrenopolyporus hunteri</i></th><td>MUCL 52673</td><td>ET</td><td>KY610421</td><td>KY610472</td><td>KY624309</td><td>KU159530</td></tr><tr><th><i>Pyrenopolyporus laminosus</i></th><td>MUCL 53305</td><td>T</td><td>KC968934</td><td>KY610485</td><td>KY624303</td><td>KC977292</td></tr><tr><th><i>Pyrenopolyporus nicaraguense</i></th><td>CBS 117739</td><td></td><td>AM749922</td><td>KY610489</td><td>KY624307</td><td>KC977272</td></tr><tr><th><i>Rhopalostroma angolense</i></th><td>CBS 126414</td><td></td><td>KY610420</td><td>KY610459</td><td>KY624228</td><td>KX271277</td></tr><tr><th><i>Rostrohypoxylon terebratum</i></th><td>CBS 119137</td><td>T</td><td>DQ631943</td><td>DQ840069</td><td>DQ631954</td><td>DQ840097</td></tr><tr><th><i>Ruwenzoria pseudoannulata</i></th><td>MUCL 51394</td><td>T</td><td>KY610406</td><td>KY610494</td><td>KY624286</td><td>KX271278</td></tr><tr><th><i>Thamnomyces dendroidea</i></th><td>CBS 123578</td><td>T</td><td>FN428831</td><td>KY610467</td><td>KY624232</td><td>KY624313</td></tr><tr><th><i>Xylaria arbuscula</i></th><td>CBS 126415</td><td></td><td>KY610394</td><td>KY610463</td><td>KY624287</td><td>KX271257</td></tr><tr><th><i>Xylaria hypoxylon</i></th><td>CBS 122620</td><td>ET</td><td>KY610407</td><td>KY610495</td><td>KY624231</td><td>KX271279</td></tr></tbody></table><p>......continued on the next page</p><p>......continued on the next page</p><p>......continued on the next page</p><p><b>Abbreviations: CBS:</b> Culture collection of the Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands; <b>MUCL:</b> Agrofood & Environmental Fungal Collection; <b>GMBC:</b> Guizhou Medical University Culture Collection; <b>STMA:</b> HZI culture collection, Helmholtz Centre for Infection Research, Braunschweig, Germany; <b>MUM:</b> Micoteca da Universidade do Minho; <b>UCH:</b> Universidad Autonoma de Chiriqui; <b>FCATAS:</b> Fungarium of the Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences; <b>KUMCC:</b> Kunming Institute of Botany Culture Collection; <b>HKAS:</b> Cryptogamic Herbarium of Kunming Institute of Botany, Chinese Academy of Sciences; <b>MFLUCC:</b> Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; <b>JF:</b> Jonkershoek Forestry Research Centre, Environment Affairs Department; <b>BCRC:</b> Bioresource Collection and Research Center; <b>DSM:</b> Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; <b>GMBCC:</b> Guizhou Medical University Culture Collection, Guiyang, China; <b>CLM -RV:</b> -; <b>ATCC:</b> American Type Culture Collection; <b>YMJ:</b> YuMing, Ju; “-”: not available in the abbreviations.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.