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53 results for “Manuscript Studies”
Dataset for the Figure 2 in manuscript "Numerical study of coupled water and vapour flow, heat transfer, and solute transport in variably-saturated deformable soil during freeze-thaw cycles"
<p>This dataset includes the gathered experimental measurements of a freezing test by Wu (2017) for the model's verification shown in Figure 2 of the manuscript entitled 'Numerical study of coupled water and vapour flow, heat transfer, and solute transport in variably-saturated deformable soil during freeze-thaw cycles'' by Huang, X., and Rudolph, D.L.</p>
The dataset of the manuscript "Numerical study of the initial condition and emission on simulating PM2.5 concentrations in Comprehensive Air Quality Model with extensions version 6.1 (CAMx v6.1): Taking Xi'an as example"
<ul> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/bcfile.rar?versionId=4909d094-5877-408e-bd4f-0c969c54e585">bcfile.rar</a>: the clean initial and boundary condition files.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/Emis_forNov.rar?versionId=0a1e8b66-5157-4819-8c03-20fb7797d8ef">Emis_forNov.rar</a> and <a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/Emis_forDec.rar?versionId=d4db00f1-ec1b-4096-973e-6a87133e4eac">Emis_forDec.rar</a>: the emission files in November and December 2016.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/tuvfile.rar?versionId=5dcf0977-e416-466e-9089-bbf0726c788d">tuvfile.rar</a> and <a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/o3mapfile.rar?versionId=9c25cae9-f00e-4ad3-b4dc-7a721f7f44d7">o3mapfile.rar</a>: the photolysis files.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/camx.cp1.rar?versionId=09ded31b-4c42-4e40-a21c-0f18877e9e41">camx.cp[1-5].rar</a>: the results of sensitivity experiments for using clean initial condition files.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/camx.r1120p1.rar?versionId=45d6e209-8e66-43ed-bc0b-dc8af5521352">camx.r1120p[1-3].rar</a>: the results of sensitivity experiments for R1120.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/camx.r1124.rar?versionId=c138e436-0416-4701-948d-ce761cf6c5cf">camx.r1124.rar</a>: the results of sensitivity experiments for R1124.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/contnuous_B12.rar?versionId=34485c43-77ac-4001-8a6d-a57b7ff821e3">contnuous_B12.rar</a>: the results of sensitivity experiments for CT12.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/contnuous_B24.rar?versionId=0f325a61-f19c-4bac-b8b4-7e229c332bf9">contnuous_B24.rar</a>: the results of sensitivity experiments for CT24.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/scripts.zip?versionId=b030444c-51a5-4673-b9d1-7e80ec42a3b9">scripts.zip</a>: all scripts covering every data processing action for all the results reported in the paper.</li> <li><a href="https://zenodo.org/api/files/cabf59e1-a955-4190-a83c-48d82efea4e6/data.zip?versionId=52917a53-fca7-4a72-ba2f-a2ce7593adc4">data.zip</a>: final data tables used to plot figures and tables.</li> </ul>
Dataset and analysis script for the manuscript "Status, rivalry and admiration-seeking in narcissism and depression: a behavioral study"
<p><em>Datasets and analysis script for the manuscript "Status, rivalry and admiration-seeking in narcissism and depression: a behavioral study".</em></p> <p><em>The attached R script begins with a read-me section with a short explanation of all variables present in the datasets. This information is also uploaded as a separate readMe in .txt format. Analyses are organized with respect to their order of appearance in the preprint (<a href="https://doi.org/10.31234/osf.io/mxve9">https://doi.org/10.31234/osf.io/mxve9</a>).</em></p> <p><em>The data is uploaded in two datasets: a long-format one (ds_pooled.csv) employed in the trial-by-trial regression models and a wide-format one for supplemental subject-level analyses (ds_pooled_wide.csv). The script contains code to further generate separate datasets for Samples 1 and 2 in both the long- and the wide-format. Please, refer to the manuscript for detailed information about how the data has been collected and analyzed.</em></p> <p><em>Note: The ds_items.zip file contains datasets with item scores of the included psychometric scales (trait-dominance, narcissism scales and depression scales). These files are only used in a short section of the script to compute reliability coefficients.</em></p>
Data from: A study of bacteria adhesion and microbial corrosion on different stainless steels in environment containing Desulfovibrio vulgaris manuscript
<p>Stainless steel is an important material used in many applications due to its mechanical strength and corrosion resistant properties. The high corrosion resistance of stainless steel is provided by the passive film. Different stainless steels have different alloy elements and surface properties which could have a significant influence on bacterial attachment to the surface and thus might result in different microbial corrosion behaviours. In this study, the effect of adhesion of sulphate reducing bacteria (SRB) and corrosion behaviour in artificial seawater on different stainless steels was investigated. Stainless steel materials used were SS 410, SS 420, SS 316 and DSS 2205 and pure chromium. The contact angle was measured to study the effect of surface properties of materials. Adhesion was measured by counting cells attached to the surface of materials. The corrosion behaviour of the materials was measured by electrochemical testing including measuring open circuit potential, electrochemical impedance spectroscopy and potentiodynamic behaviour. The long-term corrosion behaviour of each material was studied after six months exposure by measuring weight loss and surface analysis with SEM-EDX. The results show the high dependency on hydrophobicity of materials surfaces to bacterial attachment. However, bacterial attachment did not have a significant effect on the corrosion rate of the materials. Pure chromium had the best corrosion resistance to MIC with reduced bacterial attachment compared to the stainless steel samples. The nature of bacterial attachment and corrosion behaviour of the materials are discussed.</p>
Data and Plotting Tools to Reproduce Figures in Manuscript: A Parametric Study of the SASI Comparing General Relativistic and Non-Relativistic Treatments
<p>This repository contains two gzipped tarballs: plottingTools.tar.gz and plottingData.tar.gz. Within plottingData.tar.gz are the data files necessary to reproduce all of the figures in the manuscript: A Parametric Study of the SASI Comparing General Relativistic and Non-Relativistic Treatments. Within plottingTools.tar.gz are the scripts necessary to reproduce the figures.</p> <p>Contents of plottingTools.tar.gz:</p> <ul> <li>globalVariables.py: this contains some user-defined variables such as where the data is stored and what extension to use for saved figures (pdf, png, etc.)</li> <li>plotFigure*.py: these scripts generate the various figures in the manuscript</li> <li>publication.sty: this sets the formatting for the figures</li> <li>requirements.txt: this contains the python packages necessary to execute the scripts</li> </ul>
Source data of the MultiSTAAR manuscript "A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies".
<p>This dataset serves as the source data for Figures 2-3 and Extended Data Figures 1-2 of the MultiSTAAR manuscript titled "A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies". MultiSTAAR is a statistical framework and computationally-scalable analytical pipeline for functionally-informed multi-trait rare variant analysis in large-scale WGS studies.<br><br><strong>Figure 2.</strong> Manhattan plots and Q-Q plots for unconditional gene-centric coding, noncoding and ncRNA multi-trait analysis of low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C) and triglycerids (TG) using TOPMed data (<em>n</em> = 61,838).<br><br><strong>Figure 3.</strong> TOPMed genetic region (2-kb sliding window) unconditional multi-trait analysis results of low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C) and triglycerides (TG) using TOPMed data (<em>n</em> = 61,838).<br><br><strong>Extended Data Figure 1.</strong> Manhattan plots and Q-Q plots for unconditional gene-centric coding, noncoding and genetic region (2-kb sliding window) multi-trait analysis of fasting glucose (FG) and fasting insulin (FI) using TOPMed data (<em>n</em> = 21,731).<br><br><strong>Extended Data Figure 2.</strong> Manhattan plots and Q-Q plots for unconditional gene-centric coding, noncoding and genetic region (2-kb sliding window) multi-trait analysis of C-reactive protein (CRP), interleukin 6 (IL-6), lipoprotein-associated phospholipase A2 (Lp-PLA2) activity, and lipoprotein-associated phospholipase A2 (Lp-PLA2) mass using TOPMed data (<em>n</em> = 9,380).</p>
Raw data of manuscript "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods" submitted to PeerJ
<p>Some raw data and original calculating results of this manuscript.</p>
Study data supporting the manuscript titled: Effect of buprenorphine on fentanyl-induced respiratory depression
<p><b>Background: </b>Opioid-induced respiratory depression driven by ligand binding to mu-opioid receptors is a leading cause of opioid-related fatalities. Buprenorphine, a partial agonist, binds with high affinity to mu-opioid receptors but displays partial respiratory depression effects. The authors examined whether sustained buprenorphine plasma concentrations similar to those achieved with some extended-release injections used to treat opioid use disorder could reduce the frequency and magnitude of fentanyl-induced respiratory depression.</p> <p><b>Methods:</b> In this two-period crossover, single-centre study, 14 healthy volunteers (single-blind, randomized) and eight opioid-tolerant (OT) patients taking daily opioid doses ≥90 mg oral morphine equivalents (open-label) received continuous intravenous buprenorphine or placebo for 360 minutes, targeting buprenorphine plasma concentrations of 0.2 or 0.5 ng/mL in healthy volunteers and 1.0, 2.0 or 5.0 ng/mL in OT patients. Upon reaching target concentrations, participants received up to four escalating intravenous doses of fentanyl. The primary endpoint was change in isohypercapnic minute ventilation (V<sub>E</sub>). Additionally, occurrence of apnea was recorded.</p> <p><b>Results:</b> Fentanyl-induced changes in V<sub>E</sub> were smaller at higher buprenorphine plasma concentrations. In healthy volunteers, at target buprenorphine concentration of 0.5 ng/mL, the first and second fentanyl boluses reduced V<sub>E</sub> by [LSmean (95% CI)] 26% (13-40%) and 47% (37-59%) compared to 51% (38-64%) and 79% (69-89%) during placebo infusion (<i>p</i>=0.001 and <.001, respectively). Discontinuations for apnea limited treatment comparisons beyond the second fentanyl injection. In OT patients, fentanyl reduced V<sub>E</sub> up to 49% (21-76%) during buprenorphine infusion (all concentration groups combined) versus up to 100% (68-132%) during placebo infusion (<i>p</i>=0.006). In OT patients, the risk of experiencing apnea requiring verbal stimulation following fentanyl boluses was lower with buprenorphine than with placebo (odds ratio: 0.07; 95% CI: 0.0 to 0.3; <i>p</i>=0.001).</p> <p><b>Interpretation:</b> Results from this proof-of-principle study provide the first clinical evidence that high sustained plasma concentrations of buprenorphine may protect against respiratory depression induced by potent opioids like fentanyl.</p>
Dataset presented in the recently submitted AGU manuscript "A multi-resolution finite-element approach for global electromagnetic induction modeling with application to southeast China coastal geomagnetic observatory studies"
<p>Dataset presented in the recently submitted AGU paper "A multi-resolution finite-element approach for global electromagnetic induction modeling with application to southeast China coastal geomagnetic observatory studies"</p>
Scripts and data from the study 'Characterisation of magnetic atomic and molecular beamlines for the extraction of empirical scattering-matrices' (PCCP manuscript number CP-ART-04-2024-001785)
<p>This repository contains the data used for the article "Characterisation of magnetic atomic and molecular beamlines for the extraction of empirical scattering-matrices" and includes the code for generating the figures in the publication.</p>
Power study results files for manuscript "Testing pleiotropy vs. separate QTL in multiparental populations"
<p>Results files for power study in manuscript "Testing pleiotropy vs. separate QTL in multiparental populations" by F Boehm, E Chesler, B Yandell, and K Broman.</p>
Dataset for JGR Atmospheres manuscript " An Observational Constraint of VOC Emissions for Air Quality Modeling Study in the Pearl River Delta Region"
<p>The file includes hourly observations of ground-level ozone (O<sub>3</sub>) and nitrogen dioxide (NO<sub>2</sub>) concentrations at 56 environmental monitoring stations in the Pearl River Delta (PRD) region in China during June 2018. The units are in μg/m<sup>3</sup>.</p>
Data from: A study of bacteria adhesion and microbial corrosion on different stainless steels in environment containing Desulfovibrio vulgaris manuscript
Open the record for dataset details and reuse information.
Study data supporting the manuscript titled: Effect of buprenorphine on fentanyl-induced respiratory depression
Open the record for dataset details and reuse information.
Data for manuscript "The proportion of non-depressed subjects in a study sample strongly affects the results of psychometric analyses of depression symptoms"
<p>Data sets underlying the manuscript "The proportion of non-depressed subjects in a study sample strongly affects the results of psychometric analyses of depression symptoms" (doi: 10.1371/journal.pone.0235272). The file "data_table1.rds" contains the data underlying table 1 of the manuscript, whereas the file "data_figure1.rds" contains the data underlying figure 1. Both files are stored in RDS-format, which is a data format used in the programming language R. RDS-files can be loaded using R with the function readRDS(). Note that "data_figure1.rds" is a list of 22 elements. Elements 1, 21, and 22 are original data sets (depressed subjects, general population, and nondepressed subjects, respectively), while the remaining elements are lists each containing 500 newly generated data sets as described in the method section of the manuscript. For more details about the data please refer to the manuscript.</p>
Updated dataset for the manuscript - "Pore-scale Water Vapor Condensation Behaviors in Shales: An Experimental Study"
<p>Updated dataset for the manuscript entitled "Pore-scale Water Vapor Condensation Behaviors in Shales: An Experimental Study".</p>
Potentials for 3D in the Study of Manuscripts: The St. Chad Gospels Lichfield Cathedral
<p>Bill Endres discusses potentials for 3D in manuscript studies. He has scanned Lichfield Cathedral's St. Chad Gospels, an 8th-century illuminated manuscript. For images of the complete manuscript, visit <a href="https://lichfeld.ou.edu/">https://lichfeld.ou.edu</a> . </p> <p>This video was made for the 2012 Digital Transformation Moot in London, sponsored by the Art and Humanities Research Council.</p>
Supplementary Materials of the Manuscript: "Evolving a Methodology for Assessing Pesticide Pressure on Water Bodies under Data Scarce Conditions in compliance with the European Green Deal – Case Study on Marmara Basin in Türkiye-ID:sustainability-2755948"
Open the record for dataset details and reuse information.
External RNA-seq dataset for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"
<p>RNA-seq dataset of ovarian cancer from TCGA and normal ovary from GTEx database</p>
External microarray datasets for manuscript entitled "Downregulated dual-specificity protein phosphatase 1 in ovarian carcinoma: a comprehensive study with multiple methods"
<p>Microarrays related to ovarian carcinoma from GEO database</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.