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132 results for “Tissue patterning”
Emergence of a geometric pattern of cell fates from tissue-scale mechanics in the Drosophila eye
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Data from: Automated segmentation of complex patterns in biological tissues: lessons from stingray tessellated cartilage
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Aboveground plant tissue carbon and nitrogen:Effect of Burning Patterns on Vegetation in the Fish Lake Burn Compartments
This study examines the effects of long-term prescribed burning treatments on vegetation structure and composition, productivity, and nutrient cycling in upland oak savanna and woodland vegetation. The basis for the study is an ongoing, experimental prescribed burning program begun in 1964 at Cedar Creek, and a similar program operating since 1962 on the adjacent Helen Allison Savanna property (owned by The Nature Conservancy). These prescribed burning programs are designed to subject upland oak communities (and some old fields) to different burn frequencies and patterns of burning, with the ultimate objectives of 1) restoring and maintaining the historically important savanna and open woodland vegetation, and 2) providing information about the effects of different burning patterns on vegetation structure and composition. This study addresses the latter of these two purposes and expands on it by also investigating possible influences of fire on resource availability (nutrients, water, and light) and net primary productivity. This study represents a continuation and expansion of experiments 015 and 094.
Research data supporting "Remote magnetic nanoparticle manipulation enables the dynamic patterning of cardiac tissues"
<p>Research data supporting the publication:</p> <p>Zwi-Dantsis et al., 2020, Advanced Materials, DOI: 10.1002/adma.201904598.</p>
Data from: Post-Turing tissue pattern formation: advent of mechanochemistry
Chemical and mechanical pattern formation is fundamental during embryogenesis and tissue development. Yet, the underlying molecular and cellular mechanisms are still elusive in many cases. Most current theories assume that tissue development is driven by chemical processes: either as a sequence of chemical patterns each depending on the previous one, or by patterns spontaneously arising from specific chemical interactions (such as "Turing-patterns"). Within both theories, mechanical patterns are usually regarded as passive by-products of chemical pre-patters. However, several experiments question these theories, and an increasing number of studies shows that tissue mechanics can actively influence chemical patterns during development. In this study, we thus focus on the interplay between chemical and mechanical processes during tissue development. On one hand, based on recent experimental data, we develop new mechanochemical simulation models of evolving tissues, in which the full 3D representation of the tissue appears to be critical for obtaining a realistic mechanochemical behaviour. The presented modelling approach is flexible and numerically studied using state of the art finite element methods. Thus, it may serve as a basis to combine simulations with new experimental methods in tissue development. On the other hand, we apply the developed approach and demonstrate that even simple interactions between tissue mechanics and chemistry spontaneously lead to robust and complex mechanochemical patterns. Especially, we demonstrate that the main contradictions arising in the framework of purely chemical theories are naturally and automatically resolved using the mechanochemical patterning theory.
Chemotherapy on Methylation Patterns in Breast Tumor Tissue Correlating With Clinical Response and Outcomes
ClinicalTrials.gov study NCT00698477. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Data from: Post-Turing tissue pattern formation: advent of mechanochemistry
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Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin
GEO Series GSE63979. Homo sapiens. 42 samples. Type: Expression profiling by high throughput sequencing.
Morphogen Stimulated Endocytic Recycling Drives Cytoneme Loading for Mammalian Tissue Patterning
GEO Series GSE242161. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing.
Characterization of gene expression patterns among PXB-cells, cryopreserved primary human hepatocytes, HepaRG cells, HepG2 cells, and total human liver tissue
GEO Series GSE146023. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing.
Tissue- and Species-Specific Patterns of RNA metabolism in Post-Mortem Mammalian Retina and Retinal Pigment Epithelium
GEO Series GSE135415. Papio anubis; Mus musculus. 106 samples. Type: Expression profiling by high throughput sequencing.
A complex pattern of gene expression in tissue affected by viperid snake envenoming: the emerging role of autophagy-related genes
GEO Series GSE248215. Homo sapiens; Mus musculus. 20 samples. Type: Expression profiling by array.
A comparison of genome-wide DNA methylation patterns between different tissues from patients with coronary heart disease
GEO Series GSE62867. Homo sapiens. 24 samples. Type: Methylation profiling by array.
Mytilus galloprovincialis: differences between male and female gene expression patterns in the digestive gland tissue
GEO Series GSE23051. Mytilus galloprovincialis. 16 samples. Type: Expression profiling by array.
Effect of dietary n-3 PUFA supplementation and post-insemination plane of nutrition on global gene expression patterns in bovine uterine endometrial tissue
GEO Series GSE141937. Bos taurus. 60 samples. Type: Expression profiling by high throughput sequencing.
Prenatal alcohol exposure: profiling developmental DNA methylation patterns in central and peripheral tissues
GEO Series GSE121582. Rattus norvegicus. 60 samples. Type: Methylation profiling by high throughput sequencing.
Single-cell Transcriptome Analysis Reveals Dynamic Cell Populations and Differential Gene Expression Patterns in Control and Aneurysmal Human Aortic Tissue
GEO Series GSE155468. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
The human placenta exhibits dichotomised DNA methylation pattern compared to homogenous somatic tissue
GEO Series GSE59988. Homo sapiens. 11 samples. Type: Methylation profiling by high throughput sequencing.
Expression patterns of sense-antisense transcripts in normal and cancer tissues
GEO Series GSE14398. Homo sapiens. 24 samples. Type: Expression profiling by array; Non-coding RNA profiling by array.
Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression
GEO Series GSE86324. Bos taurus. 18 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.