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66 results for “community turnover”
Supplement: Extensive diversity and rapid turnover of phage defense repertoires in cheese-associated bacterial communities
<p>Background<br> Phages are key drivers of genomic diversity in bacterial populations as they impose strong selective pressure on the evolution of bacterial defense mechanisms across closely related strains. The pan-immunity model suggests that such diversity is maintained because the effective immune system of a bacterial species is the one distributed across all strains present in the community. However, only few studies have analyzed the distribution of bacterial defense systems at the community-level, mostly focusing on CRISPR and comparing samples from complex environments. Here, we studied 2778 bacterial genomes and 188 metagenomes from cheese-associated communities, which are dominated by a few bacterial taxa and occur in relatively stable environments.</p> <p>Results<br> We corroborate previous laboratory findings that in cheese-associated communities nearly identical strains contain diverse and highly variable arsenals of innate and adaptive (i.e., CRISPR-Cas) immunity systems suggesting rapid turnover. CRISPR spacer abundance correlated with the abundance of matching target sequences across the metagenomes providing evidence that the identified defense repertoires are functional and under selection. While these characteristics align with the pan-immunity model, the detected CRISPR spacers only covered a subset of the phages previously identified in cheese, providing evidence that CRISPR does not enable complete immunity against all phages, and that the innate immune mechanisms may have complementary roles.</p> <p>Conclusions<br> Our findings show that the evolution of bacterial defense mechanisms is a highly dynamic process and highlight that experimentally tractable, low complexity communities such as those found in cheese, can help to understand ecological and molecular processes underlying phage-defense system relationships. These findings can have implications for the design of robust synthetic communities used in biotechnology and the food industry.</p>
Sustained mangrove reproduction despite major turnover in pollinator community composition at expanding range edge
<p><strong>Background and Aims</strong></p> <p>How well plants reproduce near their geographic range edge can determine whether distributions will shift in response to changing climate. Reproduction at the range edge can be limiting if pollinator scarcity leads to pollen limitation, or if abiotic stressors affect allocation to reproduction. For many animal-pollinated plants with expanding ranges, the mechanisms by which they have overcome these barriers are poorly understood.</p> <p><strong>Methods </strong></p> <p>In this study, we examined plant-pollinator interactions hypothesized to impact reproduction of the black mangrove, <em>Avicennia germinans</em>, which is expanding northward in coastal Florida, USA. We monitored insects visiting <em>A. germinans</em> populations varying in proximity to the geographic range edge, measured the pollen loads of the most common insect taxa and pollen receipt by <em>A. germinans</em> stigmas, and quantified flower and propagule production. <strong> </strong></p> <p><strong>Key Results</strong></p> <p>We found that despite an 84% decline in median floral visits by insects at northernmost vs. southernmost sites, range-edge pollen receipt remained high. Notably, local floral visitor assemblages exhibited substantial turnover along the study's latitudinal gradient, with large-bodied bees and hover flies increasingly common at northern sites. We also observed elevated flower production in northern populations and higher per capita reproductive output at the range edge. Furthermore, mean propagule mass in northern populations was 18% larger than propagules from the southernmost populations. <strong> </strong></p> <p><strong>Conclusions</strong></p> <p>These findings reveal no erosion of fecundity in <em>A. germinans</em> populations at range limits, allowing rapid expansion of mangrove cover in the region. These results also illustrate that substantial turnover in the assemblage of flower-visiting insects can occur at an expanding range edge without altering pollen receipt.</p>
Data from: Trait networks reveal turnover in Caribbean corals and changes in community resilience through the Cenozoic
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Sustained mangrove reproduction despite major turnover in pollinator community composition at expanding range edge
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Fig. 1 in Species turnover between the northern and southern part of the South China Sea in the Elaphropeza Macquart mangrove fly communities of Hong Kong and Singapore (Insecta: Diptera: Hybotidae)
Fig. 1. Distribution of the Malaise traps around Hong Kong (map by C. Taylor and U. Chang).
Mapping trait versus species turnover reveals spatiotemporal variation in functional redundancy and network robustness in a plant‐pollinator community
<p>1. Functional overlap among species (redundancy) is considered important in shaping competitive and mutualistic interactions that determine how communities respond to environmental change. Most studies view functional redundancy as static, yet traits within species – which ultimately shape functional redundancy – can vary over seasonal or spatial gradients. We therefore have limited understanding of how trait turnover within and between species could lead to changes in functional redundancy or how loss of traits could differentially impact mutualistic interactions depending on where and when the interactions occur in space and time.</p> <p>2. Using an Arctic bumblebee community as a case study, and 1,277 individual measures from 14 species over three annual seasons, we quantified how inter- and intraspecific body-size turnover compared to species turnover with elevation and over the season. Coupling every individual and their trait with a plant visitation, we investigated how grouping individuals by a morphological trait or by species identity altered our assessment of network structure and how this differed in space and time. Finally, we tested how the sensitivity of the network in space and time differed when simulating extinction of nodes representing either morphological trait similarity or traditional species groups. This allowed us to explore the degree to which trait-based groups increase or decrease interaction redundancy relative to species-based nodes.</p> <p>3. We found that i) groups of taxonomically and morphologically similar bees turn over in space and time independently from each other, with trait turnover being larger over the season; ii) networks composed of nodes representing species versus morphologically similar bees were structured differently; and iii) simulated loss of bee trait groups caused faster coextinction of bumblebee species and flowering plants than when bee taxonomic groups were lost. Crucially, the magnitude of these effects varied in space and time, highlighting the importance of considering spatiotemporal context when studying the relative importance of taxonomic and trait contributions to interaction network architecture.</p> <p>4. Our finding that functional redundancy varies spatiotemporally demonstrates how considering the traits of individuals within networks is needed to understand the impacts of environmental variation and extinction on ecosystem functioning and resilience.</p>
Revealing the drivers of parasite community assembly: using avian haemosporidians to model global dynamics of parasite species turnover
<p>Why do some regions share more or fewer species than others? Community assembly relies on the ability of individuals to disperse, colonize, and thrive in new regions. Therefore, many distinct factors, such as geographic distance and environmental features, can determine the odds of a species colonizing a new environment. For parasites, host community composition (i.e., resources) also plays a key role in their ability to colonize a new environment as they rely on their hosts to complete their life cycle. Thus, variation in host community composition and environmental conditions should determine parasite turnover among regions. Here, we explored the global drivers of parasite turnover using avian malaria and malaria-like (haemosporidian) parasites. We compiled global databases on avian haemosporidian lineages distributions, environmental conditions, avian species distributions and functional traits and ran generalized dissimilarity models to uncover the main drivers of parasite turnover. We demonstrated that haemosporidian parasite turnover is mainly driven by geographic distance followed by host functional traits, environmental conditions, and host distributions. The main host functional traits associated with high parasite turnover were the predominance of resident (i.e., non-migratory) species and strong territoriality while the most important climatic drivers of haemosporidian turnover were mean temperature and temperature seasonality. Overall, we establish the importance of geographic distance as a key predictor of ecological dissimilarity and show that host resources influence parasite turnover more strongly than environmental conditions. We also evidenced that parasite turnover is most pronounced among tropical and less interconnected regions (i.e., regions with mostly territorial and non-migratory hosts). Our findings provide a robust foundation for the prediction of avian pathogen spread and the emergence of infectious diseases.</p>
Dung beetle community composition affects dung turnover in subtropical US grasslands
<p>Dung beetle community data were collected from August 2018 – March 2023 on three ranches; Buck Island Ranch, Durando Ranch and Longino Ranch in Florida, USA. Traps were baited with either chicken feet (trap type c), or dung in balls wrapped in muslin (trap type b) or dung placed directly on a pitfall trap (trap type a). Sample sites that had greater than 20% tree canopy cover were classed as 'closed' and 'open' if in open pasture or if the sample site had less than 20% tree canopy cover. </p>
Data for: Increases in functional diversity of mountain plant communities is mainly driven by species turnover under climate change
<p><span>Warming in mountain regions is projected to be three times faster than the global average. Pronounced climate change will likely lead to species reshuffling in mountain plant communities and consequently change ecosystem resilience and functioning. Yet, little is known about</span><span> the role of inter- versus intraspecific changes of plant traits and their consequences for functional richness and evenness of mountain plant communities under climate change. </span></p> <p><span>We performed a downslope translocation experiment of intact plant-soil mesocosms from an alpine pasture and a subalpine grassland in the Swiss and Austrian Alps to simulate an abrupt shift in climate and removal of dispersal barriers. Translocated plant communities experienced warmer and dryer climatic conditions. </span><span>We found a considerable shift from resource conservative to resource acquisitive leaf-economy in the two climate change scenarios. However, shifts in leaf-economy were mainly attributable to species turnover, namely colonization by novel lowland species with trait expressions for a wider range of resource use. We also found an increase in vegetative height of the warmed and drought-affected alpine plant community, while trait plasticity to warming and drought was limited to few graminoid species of the subalpine plant community. </span><span>Our results highlight the contrast between the strong competitive potential of novel lowland species in quickly occupying available niche space and native species' lack of both the intraspecific trait variability and the plant functional trait expressions needed to increase functional richness under warming and drought. This is particularly important for the trailing range of many mountain species (i.e. subalpine zone) where upward moving lowland species are becoming more abundant and abiotic climate stressors are likely to become more frequent in the near future. </span><span>Our study emphasizes mountain plant communities' vulnerability to novel climates and biotic interactions under climate change and highlights graminoid species as potential winners of a warmer and dryer future.</span></p>
Dung beetle community composition affects dung turnover in subtropical US grasslands
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Seasonal turnover in community composition of stream-associated macroinvertebrates inferred from freshwater environmental DNA metabarcoding
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Data for: Increases in functional diversity of mountain plant communities is mainly driven by species turnover under climate change
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Mapping trait versus species turnover reveals spatiotemporal variation in functional redundancy and network robustness in a plant‐pollinator community
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Data from: Belowground community turnover accelerates the decomposition of standing dead wood
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Revealing the drivers of parasite community assembly: using avian haemosporidians to model global dynamics of parasite species turnover
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Data from: Substantial compositional turnover of fungal communities in an alpine ridge-to-snowbed gradient
The main gradient in vascular plant, bryophyte and lichen species composition in alpine areas, structured by the topographic gradient from wind-exposed ridges to snowbeds, has been extensively studied. Tolerance to environmental stress, resulting from wind abrasion and desiccation towards windswept ridges or reduced growing season due to prolonged snow cover towards snowbeds, is an important ecological mechanism in this gradient. The extent to which belowground fungal communities are structured by the same topographic gradient, and the eventual mechanisms involved, are less well known. In this study, we analyzed variation in fungal diversity and community composition associated with roots of the ectomycorrhizal plant Bistorta vivipara along the ridge-to-snowbed gradient. We collected root samples from fifty B. vivipara plants in ten plots in an alpine area in central Norway. The fungal communities were analyzed using 454 pyrosequencing analyses of tag encoded ITS1 amplicons. A distinct gradient in the fungal community composition was found that coincided with variation from ridge to snowbeds. This gradient was paralleled by change in soil content of carbon, nitrogen and phosphorus. A large proportion (66%) of the detected 801 non-singleton operational taxonomic units (OTUs) were ascomycetes, while basidiomycetes dominated quantitatively (i.e., with respect to number of reads). Numerous fungal OTUs, many with taxonomic affinity to Sebacinales, Cortinarius and Meliniomyces, showed distinct affinities either to ridge or to snowbed plots, indicating habitat specialization. The compositional turnover of fungal communities along the gradient was not paralleled by a gradient in species richness.
Data from: Effects of dispersal mode on the environmental and spatial correlates of nestedness and species turnover in pond communities
Advances in metacommunity theory have made a significant contribution to understanding the drivers of variation in biological communities. However, there has been limited empirical research exploring the expression of metacommunity theory for two fundamental components of beta diversity: nestedness and species turnover. In this paper, we examine the influence of local environmental and a range of spatial variables (hydrological connectivity, proximity and overall spatial structure) on total beta diversity and the nestedness and turnover components of beta diversity for the entire macroinvertebrate community and active and passively dispersing taxa within pond habitats. High beta diversity almost entirely reflects patterns of species turnover (replacement) rather than nestedness (differences in species richness) in our dataset. Local environmental variables were the main drivers of total beta diversity, nestedness and turnover when the entire community was considered and for both active and passively dispersing taxa. The influence of spatial processes on passively dispersing composition, total beta diversity and nestedness was significantly greater than for actively dispersing taxa. Our results suggest that species sorting (local environmental variables) operating through niche processes was the primary mechanism driving total beta diversity, nestedness and turnover for the entire community and active and passively dispersing taxa. In contrast, spatial factors (hydrological connectivity, proximity and spatial eigenvectors) only exerted a secondary influence on the nestedness and turnover components of beta diversity.
Post-drought community turnover and functional redundancy in a tropical forest understorey
<p>Drought events are increasingly frequent, threatening the biodiversity of tropical forests. The understorey comprises a large fraction of the total plant species richness of these systems with the presence of Individual plants of some highly diverse Angiosperm families are patchily organized in the understorey of these communities. Here we quantified the effects of a drought on abundance and functional structures and on the ecosystem functioning of these patches Rubiaceae assemblages along a topographic gradient. We show that swarms of species can maintain biological diversity and stability in ecosystem functioning under drought in the understorey of a tropical forest. (Published in Journal Vegetation Science; Funded by Fundação de Amparo à Pesquisa e Inovação do Espírito Santo, FAPES).</p> <p>If you have any query, write to: karinnasantos0@gmail.com</p>
Community Tapestry: An Actionable Tool to Track Turnover and Diversity in OSS
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Data from: Effects of dispersal mode on the environmental and spatial correlates of nestedness and species turnover in pond communities
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