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ShareScore release 0.9.0
Dataset results
44 results for “comparative mapping”
Data from: Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits
Plant architecture, phenology and yield components of cultivated plants have repeatedly been shaped by selection to meet human needs and adaptation to different environments. Here we assessed the genetic architecture of 24 correlated maize traits that interact during plant cycle. Overall, 336 lines were phenotyped in a network of 9 trials and genotyped with 50K single-nucleotide polymorphisms. Phenology was the main factor of differentiation between genetic groups. Then yield components distinguished dents from lower yielding genetic groups. However, most of trait variation occurred within group and we observed similar overall and within group correlations, suggesting a major effect of pleiotropy and/or linkage. We found 34 quantitative trait loci (QTLs) for individual traits and six for trait combinations corresponding to PCA coordinates. Among them, only five were pleiotropic. We found a cluster of QTLs in a 5 Mb region around Tb1 associated with tiller number, ear row number and the first PCA axis, the latter being positively correlated to flowering time and negatively correlated to yield. Kn1 and ZmNIP1 were candidate genes for tillering, ZCN8 for leaf number and Rubisco Activase 1 for kernel weight. Experimental repeatabilities, numbers of QTLs and proportion of explained variation were higher for traits related to plant development such as tillering, leaf number and flowering time, than for traits affected by growth such as yield components. This suggests a simpler genetic determinism with larger individual QTL effects for the first category.
Data from: Temporally inter-comparable maps of terrestrial wilderness and the Last of the Wild
Wilderness areas, defined as areas free of industrial scale activities and other human pressures which result in significant biophysical disturbance, are important for biodiversity conservation and sustaining the key ecological processes underpinning planetary life-support systems. Despite their importance, wilderness areas are being rapidly eroded in extent and fragmented. Here we present the most up-to-date temporally inter-comparable maps of global terrestrial wilderness areas, which are essential for monitoring changes in their extent, and for proactively planning conservation interventions to ensure their preservation. Using maps of human pressure on the natural environment for 1993 and 2009, we identified wilderness as all 'pressure free' lands with a contiguous area >10,000 km2. These places are likely operating in a natural state and represent the most intact habitats globally. We then created a regionally representative map of wilderness following the well-established 'Last of the Wild' methodology; which identifies the 10% area with the lowest human pressure within each of Earth's 60 biogeographic realms, and identifies the ten largest contiguous areas, along with all contiguous areas >10,000 km2.
Map of the Mobility of the Burgundian Dukes and Consorts compared to the Nobility of Western- and Central-European, 1350-1550
<p>Map visualizing the mobility of the Burgundian dukes and consorts (in red) within the network of the mobility of the Western- and Central European Nobility between 1350-1550. Red lines refer to the mobility of the Burgundian dukes and their spouses.</p><p>See: Miara Fraikin and Meike Wiedemann, 'The "Burgundian Model" revisited: Using Digital Approaches to Explore the Reach of Burgundy', in Sanne Maekelberg and Krista De Jonge (eds.), <i>Mapping the Space of the Early Modern Court in Europe. Functionality and Representation, </i>2023, pp.13-34.</p>
Data on deviation from reference condition of southern Canadian lakes (2017-2019) and additive color map comparing lake state, threats and recreational use
<p>This dataset accompanies the paper Dupont et al. (2023) published in <em>Facets </em>on the social-ecological geography of southern Canadian Lakes.</p> <p>For abbreviations in the deviation_lakePulse.csv, see the paper available at <a href="https://doi.org/10.1139/facets-2023-0025">https://doi.org/10.1139/facets-2023-0025</a></p> <p>Additionally, "dev" stand for deviation and "t" at the end of variable name indicate the data was transform prior to computation of deviation.</p> <p>The Composite_mask_TNCl.tif is the additive color model with band 1 (red) depicting threat levels, band 2 (green) lake state, and band 3 (blue) recreational use.</p> <p> </p>
Exploratory Study Comparing ClearSight System 2D Map to Post Surgery Histopathological Analysis in Lumpectomy
ClinicalTrials.gov study NCT02679378. IPD Sharing: UNDECIDED. Countries: 2. Publications: 0.
Comparing Combinations of Targeted Drugs for Advanced Non-Small Cell Lung Cancer That Has EGFR and MET Gene Changes (A Lung-MAP Treatment Trial)
ClinicalTrials.gov study NCT05642572. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Global Study Comparing Pulsed Field Ablation With Electrographic Flow Mapping Versus Posterior Wall Ablation for Persistent Atrial Fibrillation
ClinicalTrials.gov study NCT07187115. IPD Sharing: Not stated. Countries: 6. Publications: 0.
Comparing the Impact of Mindful Interoceptive Mapping and Mindful Breathing on Pain and Opioid Use
ClinicalTrials.gov study NCT04523766. IPD Sharing: NO. Countries: 1. Publications: 0.
Comparative Multi-omic Mapping of Human Pancreatic Islet Endoplasmic Reticulum and Cytokine Stress Responses Provide Insights into Type 2 Diabetes Genetics
GEO Series GSE251913. Homo sapiens. 92 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Data from: Temporally inter-comparable maps of terrestrial wilderness and the Last of the Wild
Open the record for dataset details and reuse information.
Data from: Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits
Open the record for dataset details and reuse information.
Comparing transcriptomic analysis using QuantSeq and RNA-Seq with Salmon quantification and Tophat2 mapping
GEO Series GSE123523. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide maps of TLR3 activated human keratinocytes compared with control human keratinocytes
GEO Series GSE129346. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
An initial comparative map of copy number variations in the goat (Capra hircus) genome
GEO Series GSE24436. Bos taurus; Capra hircus. 9 samples. Type: Genome variation profiling by genome tiling array.
Ewing sarcoma compared to a normal body map
GEO Series GSE45544. Homo sapiens. 44 samples. Type: Expression profiling by array.
Physical mapping of genes in somatic cell radiation hybrids by comparative genomic hybridization to cDNA microarrays
GEO Series GSE3269. Homo sapiens. 2 samples. Type: Genome variation profiling by array.
Proteome reference map of Haloarcula hispanica and comparative proteomic and transcriptomic analysis of polyhydroxyalkanoate biosynthesis under genetic and environmental perturbations
GEO Series GSE42800. Haloarcula hispanica. 6 samples. Type: Expression profiling by array.
Genome-wide maps of H3K27ac in HDAC3 knockout bone marrow pDCs compared with control pDCs
GEO Series GSE197212. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Oligoarray comparative genomic hybridisation-mediated mapping of suppressors of an essential receptor tyrosine kinase generated in a deletion-biased mutagenesis screen
GEO Series GSE15224. Caenorhabditis elegans. 6 samples. Type: Genome variation profiling by genome tiling array.
A first comparative map of copy number variations in the sheep genome
GEO Series GSE25122. Bos taurus; Ovis aries. 11 samples. Type: Genome variation profiling by genome tiling array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.