Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
66
datasets available to search
ShareScore release 0.9.0
Dataset results
66 results for “comparative mitochondrial genomics”
FIGURE 4 in Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes
FIGURE 4. Phylogenetic reconstruction of the Ensifera using mitochondrial PCGs and rRNAs concatenated dataset. (A) Maximum likelihood result; (B) Bayesian result.
FIGURE 3 in Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes
FIGURE 3. Mitogenome organization across sequenced Ensifera. Genome organization of (A) most sequenced ensiferans and proposed insect ancestor; (B) Gryllinae species; (C) the two Sinochlora species; (D) Phyllomimus detersus of Pseudophyllinae; (E) Ruidocollaris obscura of Phaneropterinae. The circular mitogenomes are linearized to do better presentation. The translocated regions are highlighted in color. Gene lengths are not to scale.
FIGURE 2 in Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes
FIGURE 2. Potential stem-loop structures and their location of Gryllidea. (A) the location of the predicted stem-loop in the mitogenome of Gryllidea, (B) potential stem-loop structures of cricket mitogenomes from Gryllidea
FIGURE 8 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 8. Tree showing the phylogenetic relationships among Lepidopteran insects, constructed using (A) Bayesian inference (BI). (B) Maximum Likelihood method (ML). Bootstrap values (1000 repetitions) of the branches are indicated. Drosophila melanogaster (U37541.1) and Anopheles gambiae (L20934.1) were used as outgroups.
FIGURE 6 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 6. Alignment of overlapping region between atp8 and atp6 across Lepidoptera and other insects. The numbers on the right refer to intergenic nucleotides.
FIGURE 7 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 7. (A) Alignment of the intergenic spacer region between trnS2 (UCN) and nad1 of several Lepidopteran insects. The shaded 'ATACTAA' motif is conserved across the Lepidoptera order. (B) Features present in the A+T-rich region of A. suspecta. The sequence is shown in the reverse strand. The ATATG motif is shaded. The poly-T stretch is underlined while the poly-A stretch is double underlined. The single microsatellite T/A repeats sequence are indicated by dotted underlining.
FIGURE 4 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 4. The Relative Synonymous Codon Usage (RSCU) of the mitochondrial genome of five superfamilies in the Lepidoptera. Codon families are plotted on the X axis. Codons indicated above the bar are not present in the mitogenome.
FIGURE 2 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 2. Comparison of codon usage within the mitochondrial genome of members of the Lepidoptera. Lowercase letters (a, b, c, d and e) above species name represent the superfamily to which the species belongs (a: Geometroidea, b: Bombycoidea, c: Noctuoidea, d: Tortricoidea, e Hepialoidea:).
FIGURE 1 in Mitochondrial genome of Abraxas suspecta (Lepidoptera: Geometridae) and comparative analysis with other Lepidopterans
FIGURE 1. Map of the mitogenome of A. suspecta. The tRNA genes are labeled according to the IUPAC-IUB single-letter amino acids: cox1, cox2 and cox3 refer to the cytochrome c oxidase subunits; cob refers to cytochrome b; nad1-nad6 refer to NADH dehydrogenase components; rrnL and rrnS refer to ribosomal RNAs.
Comparative mitochondrial genome and phylogenetic analysis of malaria mosquitoes Anopheles hyrcanus and Anopheles messeae supplementary files
<p><strong>T</strong><strong><span>able</span></strong><strong> S1.</strong> This study encompassed 105 species, along with their corresponding taxonomy and GenBank registration numbers.</p> <p><strong>Figure S1</strong> Inferred secondary structures of tRNAs in the mt genome of <em>An. </em><em><span>h</span></em><em>yrcanus</em><em> </em><span>(A)</span><em> </em><span>and </span><em>An. </em><em><span>m</span></em><em>esseae</em><em> </em><span>(B)</span>, with corresponding amino acids labeled next to the tRNAs.</p>
Data from: The first complete mitochondrial genome of the Indian Tent Turtle, Pangshura tentoria (Testudines: Geoemydidae): characterization and comparative analysis
Open the record for dataset details and reuse information.
Supplementary material 1 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Table S1
Figure 2 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 2 Variation in length and base composition of each of the 13 core protein coding genes (PCGs) among eight centipedes' mitochondrial genomes A PCG length variation B GC content across PCGsC AT skew D GC skew.
Figure 4 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 4 A Molecular phylogeny of eight centipede species based on Maximum Likelihood inference analysis of 13 protein-coding genes (PCGs) B Traditional morphological classification based on the position of spiracles and the variation of larvae.
Figure 1 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 1 Mitochondrial genome map of the Scolopendra mutilans. Genes drawn inside the circle are transcribed clockwise, and those outside are counterclockwise. PCGs are shown as brown arrows, rRNA genes as green arrows, tRNA genes as pink arrows. The innermost circle shows the GC content. GC content is plotted as the deviation from the average value of the entire sequence.
Figure 3 from: Hu C, Wang S, Huang B, Liu H, Xu L, Hu Z, Liu Y (2020) The complete mitochondrial genome sequence of Scolopendra mutilans L. Koch, 1878 (Scolopendromorpha, Scolopendridae), with a comparative analysis of other centipede genomes. ZooKeys 925: 73-88. https://doi.org/10.3897/zookeys.925.47820
Figure 3 Mitogenome synteny among eight centipede species. Synteny analyses were generated in Mauve 2.4.0. A total of six large homologous regions were identified among the eight mitogenomes, while the sizes and relative positions of the homologous fragments varied across the mitogenomes.
Supplementary material 4 from: Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945: 1-16. https://doi.org/10.3897/zookeys.945.49681
Figure S1
Supplementary material 1 from: Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945: 1-16. https://doi.org/10.3897/zookeys.945.49681
Table S1
Supplementary material 3 from: Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945: 1-16. https://doi.org/10.3897/zookeys.945.49681
Table S3
Supplementary material 2 from: Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945: 1-16. https://doi.org/10.3897/zookeys.945.49681
Table S2
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.