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46 results for “marine fungi”
FIG. 7 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 7. — Cryptosphaeria bathurstensis (K.D.Hyde & Rappaz) Dayarathne & K.D.Hyde, comb. nov. (BRIP 78339 – holotype): A, herbarium material; B, horizontal section through ascostroma; C, appearance of ascostromata on host; D, section through ascoma; E, peridium; F-H, asci; I, paraphyses; J-N, ascospores. Scale bars: B, 500 μm; C, 1000 μm; D, 100 μm; E-H, 20 μm; I, 10 μm; J-N, 5 μm.
FIG. 5 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 5. — Sexual morph of Cryptosphaeria avicenniae Devadatha & V.V.Sarma, sp. nov. (AMH-9952 – holotype): A, ascomata erumpent, immersed in decaying wood of Avicennia marina; B, horizontal sections of ascomata; C, vertical section of ascomata; D, peridium; E-I, immature and mature asci; J, paraphyses; K-O, ascospores; P, germ tube develop from apical side of ascospore; Q, R, culture on PDA (Q-upper, R-lower). Scale bars: C, 100 μm; D, E, 50 μm; F-I, J, K = 20 μm; J, K, 20 μm; L-P, 5 μm.
FIG. 4 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 4. — Phylogram generated from the best scoring MP tree based on combined LSU and SSU sequence data. Bootstrap support values for maximum parsimony (MP) equal or greater than 60 % are given above the nodes. The tree is rooted to Xylaria hypoxylon (OCS 100004) and Xylaria acuta (5089). Scale bar: 50 (expected number of nucleotide substitutions per site per branch).
FIG. 13. — Eutypella naqsii K.D in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 13. — Eutypella naqsii K.D.Hyde (BRIP 22588, holotype). A, herbarium material; B, horizontal section through ascostroma; C, D, vertical section through ascoma; E, peridium; F, paraphyses; G-I, asci; J-N, ascospores. Scale bars: B, 1000 μm; C, 500 μm; D,100 μm; E, F-I, 20 μm; J, 10 μm; K-N, 5 μm.
FIG. 3 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 3. — Phylogram generated from the best scoring RAxML tree based on combined LSU and SSU sequence data. Bootstrap support values for maximum likelihood (ML, blue) equal or greater than 60 % are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branches. The tree is rooted to Xylaria hypoxylon (OCS 100004) and Xylaria acuta (5089). All sequences from ex-type strains are in bold. Scale bar: 0.02 (expected number of nucleotide substitutions per site per branch).
FIG. 17. — Pedumispora rhizophorae K.D.Hyde & E.B.G in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 17. — Pedumispora rhizophorae K.D.Hyde & E.B.G.Jones (BRIP 19201 – holotype): A, herbarium material; B, C, appearance of ascostromata on host; D, section through ascoma; E, section through neck region; F, peridium; G, paraphyses; H, I, asci; J, K, ascospores. Scale bars: B, 1000 μm; C, 500 μm; D, 50 μm; E-G, 20 μm; H-K, 100 μm.
FIG. 10 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 10. — Cryptovalsa mangrovei Abdel-Wahab & Inderb (IMI 379746 – holotype): A, B, herbarium material; C, D, appearance of stromata on host; E, section through ascoma; F, neck region; G, peridium; H paraphyses; I-L, asci; M, ascospores. Scale bars: C, 500 μm; D, 200 μm; E, F, 100 μm; G, H, M, 20 μm; I-K, 50 μm.
FIG. 2 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 2. — Phylogram generated from the best scoring RAxML tree based on ITS sequence data. Bootstrap support values for maximum likelihood (ML, black) and maximum parsimony (MP, blue) equal or greater than 60% are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). Scale bar: 0.09 (expected number of nucleotide substitutions per site per branch).
FIG. 16 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 16. — Halodiatrype mangrovei (K.D.Hyde) Dayarathne & K.D.Hyde (BRIP 19869 – holotype); A, herbarium material; B, C, appearance of ascomata on host surface; D-F, vertical section through ascoma; G, vertical section through neck region; H, peridium; I, paraphyses; J-L, asci; M-P, ascospores. Scale bars: B, E, F, 500 μm; C, 1000 μm; D, 200 μm; G, 50 μm; H, K-L, 20 μm; M-P, 10 μm.
FIG. 1 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 1. — Phylogram generated from the best scoring RAxML tree based on combined ITS and Btub sequence data. Bootstrap support values for maximum likelihood (ML, black) and maximum parsimony (MP, blue) equal or greater than 60 % are given above the nodes. Bayesian posterior probabilities (PP, green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). All sequences from ex-type strains are in bold. Symbols:, polysporous species;, octosporous species;, species with less than eight spores. Scale bar: 0.2 (expected number of nucleotide substitutions per site per branch).
FIG. 12 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 12. — Diatrype mangrovei Dayarathne & K.D.Hyde, sp. nov. (MFLU 17-0412 – holotype): A, appearance of ascostromata on host (Bruguiera cylindrica); B, horizontal section through ascostroma; C, section through ascoma; D, peridium; E-G, asci; H, ascospores; I, germinating ascospore; J, K, culture on PDA (J-upper, K-lower). Scale bars: A, 500 µm; B, 500 μm; C, 100 μm; D-G, 50 μm; H, I, 10 μm.
FIG. 8 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 8. — Cryptosphaeria halophila Dayarathne & K.D.Hyde, sp. nov. (MFLU 16-1199 – holotype): A, host (Avicennia sp.); B, horizontal section through conidioma; C-E, conidiophores and conidiogenous cells; F-I, conidia. Scale bars: A, 100 μm; B-E, 50 μm; F-I, 20 μm.
FIG. 6 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 6. — Asexual morph of Cryptosphaeria avicenniae Devadatha & V.V.Sarma, sp. nov. (AMH-9952 – holotype): A, conidiomata on host (Avicennia marina); B, C, horizontal section through conidioma; D, peridium; E, F, conidiophores and conidiogenous cells; G-L, conidia. Scale bars: B-C, 100 μm; D, 50 μm; E-L, 10 μm.
FIG. 15. — B, C, F, H, I, K, M-P, R, S in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 15. — B, C, F, H, I, K, M-P, R, S, Halodiatrype salinicola Dayarathne & K.D.Hyde (MFLU 15-0179 – holotype); A, D, E, G, J, L, O, P, T, U, Halodiatrype avicenniae Dayarathne & K.D.Hyde (MFLU 16-1185 – holotype and MFLU – 16-1197):A, B, horizontal section of ascoma (MFLU 16-1185,MFLU 15-0179);C, D, vertical section through ascoma (MFLU 15-0179, MFLU 16-1185); E, F, peridium (MFLU 16-1185, MFLU 15-0179); G, H, section through neck (MFLU 16-1185, MFLU 15-0179); I, J, asci (MFLU 15-0179 (in Congo red), MFLU 16-1185); K, L, paraphyses (MFLU 15-0179, MFLU 16-1185); M-P, ascospores (MFLU 15-0179, MFLU 16-1185); Q, conidia from culture on PDA (MFLU 18-0150); R-U, culture on PDA (MFLU 15-0179, MFLU 16-1185) Scale bars: A, 1000 µm; B, 500 µm; C, D, I-L, 100 μm; E, F, Q, 20 μm; G-H, 50 μm; M-P, 10 μm
Data for marine fungi engineered to convert D-galacturonic acid to galactaric acid
<p>Two Excel files are stored, related to the successful engineering of two marine fungi (<em>Trichoderma</em> sp. LF328 and <em>Coniochaeta sp</em>. MF729) for the production of galactaric (mucic) acid from D-galacturonic acid, which is described in Vidgren et al. 2020. One file contains the HPLC data for cultivations carried out in 24-well plates with medium containing D-galacturonic acid, poly-D-galacturonic acid or pectin as a source of D-galacturonic acid, with lactose, xylose, glucose or glycerol as co-substrates. Cultures were sampled on days 3, 4 and 6, and sometimes on days 5 and 7, as indicated in the data. Data for negative results (e.g. lack of consumption of galactaric acid by the parent strains) is also included.</p> <p>The second file contains the HPLC data for cultivations carried out in 1 (<em>Coniochaeta sp</em>. C1) or 1.5 L (<em>Trichoderma</em> sp. T2) bioreactors, with information on culture volume and product yield for <em>Trichoderma</em> sp. T2.</p>
marine_fungi v1.0
<p>Accompanying files for Identification of 71 marine fungal lineages using diversity tag sequencing 2015, In prep.</p>
FIG. 9. — Cryptovalsa halosarceiicola K.D in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 9. — Cryptovalsa halosarceiicola K.D.Hyde (BRIP 20340 – holotype): A, B, herbarium material.
FIG. 2 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 2. — Continuation.
FIG. 1 in Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne & K.D.Hyde, gen. nov.
FIG. 1. — Continuation.
Data from: Fungi ahoy! Diversity on marine wooden substrata in the high North
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