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31 results for “mtCOI”
Figure 7 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 7. Schizopera abei sp. nov., line drawings, (A, B, J) paratype male (LBM1430005766); (C) another paratype male (LBM1430005767); (D–G, I, K, L) allotype male; (H, M) a third paratype male (LBM1430005768). (A) Rostrum dissected and flattened, dorsal; (B) spermatophore; (C) anal somite and caudal rami slightly compressed, dorsal; (D) antennula, anterior; (E) fourth to seventh segments of antennula, posterior; (F) basis of first leg, anterior; (G) endopod of second leg, anterior; (H) transformed lanceolate element on endopod of second leg, anterior; (I) third exopodal segment of third leg, anterior; (J) abnormal third endopodal segment of third leg, anterior; (K) endopod of fourth leg, anterior; (L) abnormal endopod of fourth leg, anterior; (M) abnormal endopod of fourth leg, anterior. Arabic numerals indicating dorsal sensilla on rostrum and anal somite.
Fig. 1. MtCOI sequence comparison for Spodoptera litura and S. exigua. A in DNA barcoding and phylogenetic relationships of Spodoptera litura and S. exigua (Lepidoptera: Noctuidae)
Fig. 1. MtCOI sequence comparison for Spodoptera litura and S. exigua. A color version of this graphic can be seen online in supplementary material for this article in Florida Entomologist 98(1) (March 2015) at http://purl.fcla.edu/fcla/entomologist/browse.
Figure 5 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 5 - Anterior edge of clypeus of Dicronocephalus. A Dicronocephalus adamsi adamsi B Dicronocephalus adamsi drumonti C Dicranocephalus yui yui D Dicronocephalus dabryi E Dicronocephalus uenoi katoi F Dicronocephalus wallichii bowringi G Dicronocephalus wallichii wallichii H Dicronocephalus wallichii bourgoini.
Figure 4 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 4 - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI and 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 1 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 1 - The male habitus of species and subspecies of Dicoronocephalus. A Dicronocephalus adamsi adamsi B Dicronocephalus adamsi drumonti C Dicranocephalus yui yui D Dicronocephalus dabryi E Dicronocephalus uenoi katoi F Dicronocephalus wallichii bowringi G Dicronocephalus wallichii wallichii H Dicronocephalus wallichii bourgoini.
Figure 8 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 8 - Metasternal process (in the circle) and aedeagi of Dicronocephalus adamsi drumonti and Dicronocephalus adamsi adamsi. A, B, C, D Dicronocephalus adamsi drumonti (Tibet) E, F, G, H Dicronocephalus adamsi drumonti (Sichuan) I, J, K, L Dicronocephalus adamsi adamsi (South Korea) M, N, O, P Dicronocephalus adamsi adamsi (North Korea) Q, R, S, T Dicronocephalus adamsi adamsi (Dandong, China).
Figure 3 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 3 - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using 16S rRNA sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 2 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 2 - Phylogenetic relationships among Dicronocephalus species reconstructed with Bayesian inference using COI sequences. Numbers above branches indicate ML bootstrap values and Bayesian posterior probabilities. Numbers below branches are bootstrap, symmetric resampling, and jacknife support from parsimony searches, respectively. Scale bar represents 10% nucleotide mutation rate.
Figure 7 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 7 - Umbone (in the circle) of shoulder of Dicronocephalus. A Dicronocephalus adamsi adamsi B Dicronocephalus adamsi drumonti C Dicranocephalus yui yui D Dicronocephalus dabryi E Dicronocephalus uenoi katoi F Dicronocephalus wallichii bowringi G Dicronocephalus wallichii wallichii H Dicronocephalus wallichii bourgoini.
Figure 6 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
Figure 6 - Apicosutural angle of Dicronocephalus. A Dicronocephalus adamsi adamsi B Dicronocephalus adamsi drumonti C Dicranocephalus yui yui D Dicronocephalus dabryi E Dicronocephalus uenoi katoi F Dicronocephalus wallichii bowringi G Dicronocephalus wallichii wallichii H Dicronocephalus wallichii bourgoini.
BOLD mtCOI database 2023-03-31 reformatted to SINTAX format for MB_Pipeline
<p>Publicly available barcode records for the mitochondrial COI gene in the BOLD database (https://www.boldsystems.org/), release of 2023-03-31, reformatted to SINTAX format for the MB_Pipeline metabarcoding pipeline. The original data were released under a CC-BY-NC-SA license.</p> <p>The conversion was performed with scripts from reformat-barcode-db (https://github.com/monagrland/reformat-barcode-db). See log files for full command line and options used to filter sequences and prepare the HMMs. Different clustering, genetic code, and length parameters are required for each marker gene.</p> <p>The Fasta files should be indexed to UDB format with Vsearch before use.</p> <h2>Description of files</h2> <p>All records:</p> <ul> <li>bold.2023-03-31.coi-5p.all.fasta.gz - sequences in Fasta format, gzip compressed</li> <li>bold.2023-03-31.coi-5p.all.log - log file for bold2sintax script</li> <li>bold.2023-03-31.coi-5p.all.acc2bin - table of BIN identifiers for each accession, if available (else None)</li> </ul> <p>European records only:</p> <ul> <li>bold.2023-03-31.coi-5p.eur.fasta.gz - sequences in Fasta format, gzip compressed</li> <li>bold.2023-03-31.coi-5p.eur.log - log file for bold2sintax script</li> <li>european_countries.txt - List of country names used for subsetting</li> <li>bold.2023-03-31.coi-5p.eur.acc2bin - table of BIN identifiers for each accession, if available (else None)</li> </ul> <p>HMMer model for arthropod sequences:</p> <ul> <li>bold.2023-03-31.coi-5p.arthropoda.hmm - HMM file</li> <li>bold.2023-03-31.coi-5p.arthropoda.log - log file for bold2hmm script</li> </ul>
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