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105 results for “nitrogen species”
Data from: Species decline under nitrogen fertilization increases community-level competence of fungal diseases
The artificial fertilization of soils can alter the structure of natural plant communities and exacerbate pathogen emergence and transmission. Although the direct effects of fertilization on disease resistance in plants have received some research attention, its indirect effects of altered community structure on the severity of fungal disease infection remain largely uninvestigated. We designed manipulation experiments in natural assemblages of Tibetan alpine meadow vegetation along a nitrogen-fertilization gradient over 5 years to compare the relative importance of direct and indirect effects of fertilization on foliar fungal infections at the community level. We found that species with lower proneness to pathogens were more likely to be extirpated following fertilization, such that community-level competence of disease, and thus community pathogen load, increased with the intensity of fertilization. The amount of nitrogen added (direct effect) and community disease competence (indirect effect) provided the most parsimonious combination of parameters explaining the variation in disease severity. Our experiment provides a mechanistic explanation for the dilution effect in fertilized, natural assemblages in a highly specific pathogen–host system, and thus insights into the consequences of human ecosystem modifications on the dynamics of infectious diseases.
Data from: Plant water use affects competition for nitrogen: why drought favors invasive species in California
Classic resource competition theory typically treats resource supply rates as independent; however, nutrient supplies can be affected by plants indirectly, with important consequences for model predictions. We demonstrate this general phenomenon by using a model in which competition for nitrogen is mediated by soil moisture, with competitive outcomes including coexistence and multiple stable states as well as competitive exclusion. In the model, soil moisture regulates nitrogen availability through soil moisture dependence of microbial processes, leaching, and plant uptake. By affecting water availability, plants also indirectly affect nitrogen availability and may therefore alter the competitive outcome. Exotic annual species from the Mediterranean have displaced much of the native perennial grasses in California. Nitrogen and water have been shown to be potentially limiting in this system. We parameterize the model for a Californian grassland and show that soil moisture–mediated competition for nitrogen can explain the annual species' dominance in drier areas, with coexistence expected in wetter regions. These results are concordant with larger biogeographic patterns of grassland invasion in the Pacific states of the United States, in which annual grasses have invaded most of the hot, dry grasslands in California but perennial grasses dominate the moister prairies of northern California, Oregon, and Washington.
Divergent trait responses to nitrogen addition in tall and short species
<p><span>Asymmetrical light competition and direct detrimental effect of nitrogen have been proposed as two main mechanisms driving species richness declines following nitrogen (N) addition. N addition is also known to alter functional trait composition towards increased dominance of tall and fast-growing species. However, whether trait changes vary between species and, in particular, how the traits of tall and short species respond to N addition has rarely been studied. Understanding whether different trait changes occur for tall and short species would provide insight into mechanisms underlying N addition effects.</span></p> <p><span>Based on a long-term N addition experiment, we measured the natural height of 44 plant species and the photosynthetic active radiation (PAR) at seven heights in the vegetation and identified a clear stratification of the plant community into tall species (>30cm tall), which experienced high light conditions, and short species that grew under the canopy. We also measured four functional traits, including maximum plant height, specific leaf area, leaf dry matter content and leaf thickness, on 35 species that occurred</span> <span>in fertilized and unfertilized plots. </span></p> <p><span>Structural equation modelling revealed that nitrogen (N) addition significantly reduced species richness by enhancing light asymmetry and had no direct effects, suggesting that N detrimental effects are negligible in our system. Consistent with this, we found different responses of traits and diversity for the tall and short species. Specifically, N addition reduced the number of short species but increased the number of tall species. In addition, specific leaf area increased, and leaf dry matter content decreased, for short species only, suggesting that they shifted to a fast growth strategy to cope with lower light levels. In contrast, tall species increased their height further to capture more light at the top of the canopy. </span><span> </span></p> <p><span><em>Synthesis</em>. </span><span>The divergent trait responses observed for tall and short species show that although certain traits, like height and leaf traits, show correlated responses at the whole community level, these correlations may not be consistent across all species. Together, our results highlight that light competition is the main mechanism driving species loss following N addition gradient.</span></p>
Assessing exchange-correlation functionals for heterogeneous catalysis of nitrogen species: VASP input and output
<p>This contains all VASP data used in the paper titled "Assessing exchange-correlation functionals for heterogeneous catalysis of nitrogen species".</p> <p>Please read README.md file for the description of each file.</p> <p>Author list: Honghui Kim, Neung-Kyung Yu, Nianhan Tian, and Andrew J. Medford*<br>arxiv:<a href="https://arxiv.org/abs/2403.14482"> https://arxiv.org/abs/2403.14482</a></p>
Data for: Phosphorus limitation of early growth differs between nitrogen-fixing and non-fixing dry tropical forest tree species
<p>Tropical forests are often characterized by low soil phosphorus (P) availability, suggesting that P limits plant performance. However, how seedlings from different functional types respond to soil P availability is poorly known but important for understanding and modeling forest dynamics under changing environmental conditions.</p> <p>We grew four nitrogen (N)-fixing Fabaceae and seven diverse non-N-fixing tropical dry forest tree species in a shade house under three P fertilization treatments, and evaluated carbon (C) allocation responses, P demand, P-use, investment in P acquisition traits, and correlations among P acquisition traits.</p> <p>N-fixers grew larger with increasing P addition in contrast to non-N-fixers, which showed fewer responses in C allocation and P-use. Foliar P increased with P addition for both functional types, while P acquisition strategies did not vary among treatments but differed between functional types, with N-fixers showing higher root phosphatase activity (RPA) than non-fixers.</p> <p>Growth responses suggest that N-fixers are limited by P, but non-fixers may be limited by other resources. However, regardless of limitation, P acquisition traits such as mycorrhizal colonization and RPA were non-plastic across a steep P gradient. Differential limitation among plant functional types has implications for forest succession and earth system models.</p>
Data from: Nitrogen fertilization differentially enhances nodulation and host growth of two invasive legume species in an urban environment
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Data from: Plant water use affects competition for nitrogen: why drought favors invasive species in California
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Data for: Phosphorus limitation of early growth differs between nitrogen-fixing and non-fixing dry tropical forest tree species
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Data from: Interspecific differences in nitrogen form acquisition strategies contribute to species dominance
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Tree species controls over nitrogen and phosphorus cycling in a wet tropical forest
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Data from: Parental environment nitrogen and phosphorus availability affects offspring traits of eight annual plant species
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Data from: Effects of soil type and light on height growth, biomass partitioning, and nitrogen dynamics on 22 species of tropical dry forest tree seedlings: comparisons between legumes and nonlegumes
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Data from: Species decline under nitrogen fertilization increases community-level competence of fungal diseases
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Divergent trait responses to nitrogen addition in tall and short species
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Reproductive output: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
Weed biomass: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
Root biomass data: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
Plant aboveground biomass data: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
Plant species percent cover data: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
Soil nitrate and ammonium: Traits: Competition and Resource Reduction for Five Grass Species Grown in Monoculture and Competition in Soils with Different Nitrogen Availabilities
This experiment was designed to determine the relationships between plant traits, successional status, and resource reduction for five grass species that were grown for three years in monoculture in replicated field plots on soils prepared to have different availabilities of nitrogen. It also determines the results of competition experiments among various combinations of these species as well as the differing feedback effects of each species on soil nitrogen mineralization rates. All of this work has motivated the desire to more fully understand the mechanisms of interactions among plants and their resources, in the belief that this might eventually allow predictions of the dynamics, diversity, and composition of plant communities.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.