Skip to main content
Powered by ShareScore

Find research datasets worth reusing

Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.

275

datasets available to search

ShareScore release 0.9.0

Reset

Dataset results

275 results for “plant morphology”

Learn how ShareScore rates datasets ↗
zenodo40/100

Figs 19–34. Doubledaya sinuata Zia, 1934 in Morphology of adult and immature stages, and host plant use of Doubledaya sinuata (Coleoptera: Erotylidae: Languriinae)

Figs 19–34. Doubledaya sinuata Zia, 1934, larva (19–28) and pupa (29–34). 19–20 – larva, dorsal (19) and left lateral (20) views; 21 – head; 22 – right antenna, dorsal view; 23 – left mandible, ventral view; 24–25 – left maxilla, dorsal (24) and ventral (25) views; 26 – labium, ventral view; 27 – right front leg, anterior view; 28 – spiracle of abdominal segment I; 29–31 – pupa, ventral (29), left lateral (30) and dorsal (31) views; 32 – spines on abdominal tergite VII, posterior view; 33 – spines on abdominal sternite VII, posterior view; 34 – urogomphi, dorsal view. Scale bars = 5.0 mm (19–20, 29–31), 0.5 mm (21, 27), 0.2 mm (22–26, 32–34), 0.1 mm (28).

opencc-by-4.0Dec 2014View details →
zenodo40/100

Fig. 7. Bergera koenigii L. A. Plants. B. Inflorescence. C. Pistil and stamens. D–E. Infructescence. F. Fruits. G. Seeds. H in Taxonomic revision of Bergera J.Koenig ex L. (Rutaceae) based on the molecular phylogeny and morphology

Fig. 7. Bergera koenigii L. A. Plants. B. Inflorescence. C. Pistil and stamens. D–E. Infructescence. F. Fruits. G. Seeds. H. Ovary crossection. Photos taken by Feng-Juan Mou in China.

opencc-by-4.0Feb 2023View details →
dryad40/100

Data from: Population divergence in heat and drought responses of a coastal plant: from metabolic phenotypes to plant morphology and growth

<p>This dataset supports the article "Population divergence in heat and drought responses of a coastal plant: from metabolic phenotypes to plant morphology and growth", which is under minor revision in Journal of Experimental Botany. The study addresses the combined effects of and plant population origin, drought and heat stress on plant growth, plant morphology and the leaf metabolome. The data were assessed in Northern and Southern European individuals of <em>Cakile maritma</em> (See Rocket).  An R-script containing all statistical analyses that have been implemented with these data is also provided.</p>

opencc-zeroMay 2023View details →
dryad40/100

Data from: Population divergence in heat and drought responses of a coastal plant: from metabolic phenotypes to plant morphology and growth

Open the record for dataset details and reuse information.

publicMay 2023View details →
dryad40/100

Morphological and DNA sequence data generated by Sanger sequencing and target capture methods for moss plants in the genus Fissidens from herbarium specimens

Open the record for dataset details and reuse information.

publicJun 2022View details →
dryad36/100

Data from: Disentangling evolutionary, environmental and morphological drivers of plant anatomical adaptations to drought and cold in Himalayan graminoids

Understanding what determine plants ability to survive drought and cold is crucial for predicting how plants may respond to ongoing climate change. Plant survival strategies are usually characterized by morphological and physiological adaptations, while their underlying anatomical settings are largely unknown. Woody angiosperms and herbaceous dicots have repeatedly evolved small water transporting conduits and large storage parenchyma tissues at colder or drier places to cope with freezing- and drought-induced damages. However, whether these adaptations are also valid for graminoids remains unclear. Here we show that stem anatomical variations in grasses, sedges and rushes dominating in western Himalayan grasslands are driven by elevation and soil moisture via control over aboveground plant stature and belowground clonal growth, while phylogenetic constraints have only a weak effect. Phylogenetic comparative analyses controlling for confounding factors showed that the elevation-related cooling controls the conductive system through reduced vessel diameter and extended assimilatory and storage tissues with more chlorenchyma and less sclerenchyma around vessels. The soil moisture deficit, on the other hand, determines stabilization structures by promoting short-rhizomatous turf graminoids with hollow stems, thicker epidermis and deep adventitious roots in dry steppes and semi-deserts. Saline wetlands and moist alpine pastures promote long-rhizomatous short-stature plants with lower need for mechanical support (absence of hollow stem) and exposure to high evaporative forcing (thinner epidermis). Observed trends of decreasing vessel sizes and lignification rate with elevation supports the existing knowledge that narrower vessels and extensive parenchyma assist plants to grow in cold environments by avoiding freezing-induced cavitation. Our results bring novel information on ecological drivers influencing the evolution of anatomical adaptations in high mountain graminoids. Distinct grassland types, covering elevations from 2650 to 6150 m, harbor unrelated species with different evolutionary histories that have converged towards similar anatomical structures.

opencc-zeroJun 2019View details →
dryad36/100

Data from: Stronger cooling effects of transpiration and morphology of the plants from a hot dry habitat than from a hot wet habitat

1. Leaf temperature exerts an important impact on the microenvironment and physiological processes of leaves. Plants from different habitats have different strategies to regulate leaf temperature. The relative importance of morphology and transpiration for leaf temperature regulation in the hot habitat is still unclear. 2. We investigated 22 leaf morphological traits, transpiration, and thermal properties of 38 canopy species of seedlings in a greenhouse, including 18 dominant species from a hot wet habitat (HW) and 20 dominant species from a hot dry habitat (HD). To separate the impact of transpiration and morphology on leaf temperature, we measured the diurnal courses of leaf temperatures with and without transpiration. The temperature of a reference leaf beside each individual was measured simultaneously to render temperatures comparable. 3. Generally, the species from HD showed lower leaf temperatures than the species from HW under the same conditions. Both transpiration capacity and cooling effect of leaf morphology were stronger for the plants from HD. Active transpiration provides a suitable thermal environment for photosynthesis, while xeromorphic leaves can dampen heat stress when transpiration is suppressed. Higher vein density and stomatal pore area index (SPI) facilitated higher transpiration capacity of the plants from HD. Meanwhile, shorter leaves and thinner lower epidermis of the plants from HD were more efficient in heat transfer, although relationships were much weaker than the synergic effect of all the morphologic traits. 4. Our results confirmed that transpiration and leaf morphology provided double insurance for avoiding overheating, particularly for plant from HD. We emphasize that transpiration is a more effective way to cool leaves than morphology when water is sufficient, which may be an important adaptation for plant from HD where rainfall is sporadic. Our results provide further insight into the relationship between morphology and transpiration for the regulation of leaf temperature, and the co-evolution of gas exchange and thermal regulation of leaves.

opencc-zeroDec 2016View details →
dryad36/100

Ecological mechanisms explaining interactions within plant-hummingbird networks: morphological matching increases towards lower latitudes

<p><a name="ab4">Interactions between species are influenced by different ecological mechanisms, such as morphological matching, phenological overlap, and species abundances</a>. <a name="Ab1"></a><a name="ab5">How</a> these mechanisms explain interaction frequencies across environmental gradients remains poorly understood. Consequently, we also know little about the mechanisms that drive the geographical patterns in network structure, such as complementary specialization and modularity. Here, we use data on morphologies, phenologies and abundances to explain interaction frequencies between hummingbirds and plants at a large geographic scale. <a name="ab2">For 24 quantitative networks sampled throughout the Americas, we found that</a> the tendency of species to interact with morphologically matching partners contributed to specialized and modular network structures. Morphological matching best explained interaction frequencies in networks found closer to the equator and in areas with low temperature seasonality. When comparing the three ecological mechanisms within networks, we found that both morphological matching and phenological overlap generally outperformed abundances in the explanation of interaction frequencies. Together, these findings provide insights into the ecological mechanisms that underlie geographical patterns in resource specialization. Notably, our results highlight morphological constraints on interactions as a potential explanation for increasing resource specialization towards lower latitudes.</p>

opencc-zeroMar 2020View details →
dryad36/100

Morphological trait matching in plant–Hymenoptera and plant–Diptera mutualisms across an elevational gradient

<p>Morphological trait-matching and species abundance are thought to be the main factors affecting the frequency and strength of mutualistic interactions. However, the relative importance of trait-matching and species abundance in shaping species interactions across environmental gradients remains poorly understood, especially for plant–insect mutualisms involving generalist species.</p> <p>Here, we characterised variation in species and trait composition and the relative importance of trait-matching and species abundance in shaping plant–Hymenoptera and plant–Diptera mutualisms in four meadows across an elevational gradient (2,725–3,910 m) in Yulong Snow Mountain, Southwest China. We also evaluated the effects of morphological traits of flower visitors and plant composition on their foraging specialisation (d' and normalised degree).</p> <p>There was a high degree of dissimilarity in the composition of Hymenoptera and Diptera visitors and their visited plants between communities. This variation was mainly driven by the spatial replacement of species. Both for plant–Hymenoptera and plant–Diptera networks, trait-matching between nectar tube depth and proboscis length was a stronger predictor of the interactions between temporally co-occurring plants and flower visitors than species abundance. Fourth-corner analyses revealed statistically significant trait-matching between nectar tube depth and proboscis length in plant–Hymenoptera networks at all sites, suggesting that Hymenoptera consistently foraged on plant species with nectar tube depths matching their proboscis lengths. By contrast, significant trait-matching in plant–Diptera networks was only observed at the two lower elevation sites. The species-level specialisation d' of flower visitors increased significantly as the proboscis length and the difference in nectar tube depth between the plant community and the plants visited by flower visitors increased.</p> <p>Our results highlight that the importance of trait-matching in shaping pairwise interactions and niche partitioning depends on the specific features (e.g. species composition and trait availability) of the plant-pollinator system. For specialised plant-Hymenoptera systems, trait-matching is an important determinant of species interactions, whereas for generalist plant-Diptera systems, trait-matching is relatively unimportant.</p>

opencc-zeroOct 2021View details →
zenodo36/100

Robustness of organ morphology is associated with modules of co-expressed genes related to plant cell wall

<p>Reproducibility in organ size and shape is a fundamental trait of living organisms. The mechanisms underlying such robustness remain, however, to be elucidated. In the manuscript <a href="https://www.biorxiv.org/content/10.1101/2022.04.26.489498v1"><strong>&quot;Robustness of organ morphology is associated with modules of co-expressed genes related to plant cell wall&quot;, </strong>doi: https://doi.org/10.1101/2022.04.26.489498</a>, we took the sepal of Arabidopsis as a model, and we investigated whether variability of gene expression plays a role in variation of organ morphology.</p> <p>To address this question, we produced a dataset composed of both transcriptomic and morphological information obtained from 27 individual sepals from wild-type plants.</p> <p>This repository contains the raw confocal image of 30 sepals used as starting point for the analysis, as well as their extracted contours as binary images. These images were used to recover the 3D shape of the sepals.</p> <p>The 30 abaxial sepals were collected at early stage 11, from three different Col-0 wild-type plants, labeled D, E and F, grown simultaneously in experimentally controlled standard conditions. Each sepal was imaged under a confocal microscope using autofluorescence. Immediately following imaging, the sepal was frozen in liquid nitrogen for RNA extraction, on which an RNA-seq analysis was performed.</p> <p><strong>Related informations :</strong></p> <ul> <li>The repository of the numerical tools used for 3D shape extraction as well as the results of geometrical measurements is <a href="http://forge.cbp.ens-lyon.fr/redmine/projects/florivar">here</a>.</li> <li>The repository of RNA-Seq analysis results of these same sepals is here.</li> <li>And the analysis tools used to relate geometrical measurements to RNA-seq data are here.</li> </ul>

opencc-by-4.0May 2022View details →
zenodo36/100

Processed data supporting the manuscript "Cutting the sap: first molecular phylogeny of twig-girdler longhorn beetles (Coleoptera: Cerambycidae: Lamiinae: Onciderini) suggests shifts in host plant attack behaviors contributed to morphological evolution"

<div><strong>Processed data supporting the manuscript:&nbsp;</strong>Cutting the sap: first molecular phylogeny of twig-girdler longhorn beetles (Coleoptera: Cerambycidae: Lamiinae: Onciderini) suggests shifts in host plant attack behaviors contributed to morphological evolution</div> <div>&nbsp;</div> <div><strong>By:</strong> Diego de S. Souza 1, 2, Rowan L. K. French 3, Jos&eacute; O. Silva J&uacute;nior 4, Eugenio H. Nearns 5, Luciane Marinoni 4, Ian P. Swift 6, Kelly B. Miller 7, Felix A. H. Sperling 2 &amp; Marcela L. Monn&eacute; 1</div> <div>&nbsp;</div> <div>1 Department of Entomology, National Museum, Federal University of Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil.</div> <div>2 Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada.</div> <div>3 Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario, Canada.</div> <div>4 Department of Zoology, Federal University of Paran&aacute;, Curitiba, Paran&aacute;, Brazil.</div> <div>5 National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.</div> <div>6 California State Collection of Arthropods, Sacramento, California, USA.</div> <div>7 Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, New Mexico, USA.</div> <div>&nbsp;</div> <div>Corresponding author: Diego de S. Souza, dsouza@fieldmuseum.org. Current affiliation: Field Museum of Natural History, Chicago, Illinois, USA.</div> <div>&nbsp;</div> <div>&nbsp;</div> <div><strong>List of Contents:&nbsp;</strong></div> <div>&nbsp;</div> <div><strong>Onciderini_concat_matrix.phy</strong></div> <div>Concatenated matrix (cox1, Wg and CPS) used for the phylogenetic analyses of Onciderini (Coleoptera: Cerambycidae: Lamiinae: Onciderini).&nbsp;</div> <div>&nbsp;</div> <div><strong>PartitionFinder_AICc_best_scheme.txt</strong></div> <div>Results from PartitionFinder v2.1.1, containing the best partitioning scheme for the concatenated matrix of Onciderini, identified using the corrected Akaike Information Criterion (AICc), with model definitions for use in the phylogenetic analyses.</div> <div>&nbsp;</div> <div><strong>RAxML_Onciderini_concat_matrix (zip file)</strong></div> <div>- Onciderini_concat_matrix.phy: concatenated matrix (cox1, Wg and CPS) used in the RAxML phylogenetic analyses of Onciderini (Coleoptera: Cerambycidae: Lamiinae: Onciderini).</div> <div>- Partitions_AICc_RAxML.txt: partitioning scheme used in the RAxML analysis as predefined by PartitionFinder v2.1.1 using the corrected Akaike Information Criterion (AICc).</div> <div>- RAxML_bestTree.Onciderini_concat_matrix_ML: best-scoring maximum likelihood tree inferred by RAxML for the concatenated matrix of Onciderini.</div> <div>- RAxML_bipartitions.Onciderini_concat_matrix_final: bipartitions (clades) of the maximum likelihood tree inferred by RAxML with support values estimated from 1,000 pseudoreplicates.</div> <div>- RAxML_bipartitionsBranchLabels.Onciderini_concat_matrix_final: final maximum likelihood tree inferred by RAxML for the concatenated matrix of Onciderini, with labeled branches showing bootstrap support values.</div> <div>- RAxML_bootstrap.Onciderini_concat_matrix_bootstrap: bootstrap trees generated from a non-parametric bootstrap analysis in RAxML based on 1,000 pseudoreplicates.</div> <div>- RAxML_info.Onciderini_concat_matrix_bootstrap: log file containing details of the bootstrap analysis, including the settings and parameters used in the non-parametric bootstrap runs in RAxML.</div> <div>- RAxML_info.Onciderini_concat_matrix_final: log file summarizing the RAxML analysis, including settings and convergence statistics for the final maximum likelihood tree.</div> <div>- RAxML_info.Onciderini_concat_matrix_ML: log file containing details of the maximum likelihood tree search, including the parameters and models applied during the maximum likelihood analysis conducted by RAxML.</div> <div>- RAxML_log.Onciderini_concat_matrix_ML: log file of the maximum likelihood tree search for the concatenated matrix of Onciderini.</div> <div>- RAxML_parsimonyTree.Onciderini_concat_matrix_ML: parsimony starting tree used by RAxML during the maximum likelihood analysis for the concatenated matrix of Onciderini.</div> <div>- RAxML_result.Onciderini_concat_matrix_ML: maximum likelihood tree inferred by RAxML from the concatenated matrix of Onciderini, summarizing the tree topology and likelihood score for the best tree obtained.</div> <div>&nbsp;</div> <div><strong>BI_AICc_Onciderini_concat_matrix (zip file)</strong></div> <div>- BI_AICc_Onciderini_concat_matrix.nex: nexus file containing the concatenated matrix of Onciderini used for Bayesian Inference (BI), including the best-fit model scheme identified by PartitionFinder and MCMC parameters for running the analysis in MrBayes.</div> <div>- BI_AICc_Onciderini_concat_matrix.nex_r1_r2_combined_consensus.tree: consensus tree from two combined independent Bayesian Inference (BI) runs based on the concatenated matrix of Onciderini, after discarding the first 25% of initial generations as burn-in.</div> <div>- BI_AICc_Onciderini_concat_matrix.nex.run1.p: log file containing parameter values and likelihood scores from the first run of the Bayesian Inference (BI) based on the concatenated matrix of Onciderini.</div> <div>- BI_AICc_Onciderini_concat_matrix.nex.run2.p: log file containing parameter values and likelihood scores from the second run of the Bayesian Inference (BI) based on the concatenated matrix of Onciderini.</div> <div>&nbsp;</div> <div><strong>BEAST2_Onciderini_BD_lognormal (zip file)</strong></div> <div>- BEAUTi_Onciderini_BD_lognormal.xml: XML file generated by BEAUTi for running BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a lognormal distribution.</div> <div>- BEAST2_Onciderini_BD_lognormal_run[1-8].log: log files from eight independent runs of BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a lognormal distribution.</div> <div>- TreeAnnotator_Onciderini_BD_lognormal_run1-run8_consensus.out: TreeAnnotator output file combining the results of eight BEAST2 runs based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a lognormal distribution.</div> <div>- TreeAnnotator_Onciderini_BD_lognormal_run1-run8_consensus.tre: consensus tree from eight combined BEAST2 runs, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a lognormal distribution, after discarding the first 10% of initial generations as burn-in.</div> <div>&nbsp;</div> <div><strong>BEAST2_Onciderini_BD_exponential (zip file)</strong></div> <div>- BEAUTi_Onciderini_BD_exponential.xml: XML file generated by BEAUTi for running BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and an exponential distribution.</div> <div>- BEAST2_Onciderini_BD_exponential_[1-8].log: log files from eight independent runs of BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and an exponential distribution.</div> <div>- TreeAnnotator_Onciderini_BD_exponential_run1-run8_consensus.out: TreeAnnotator output file combining the results of eight BEAST2 runs based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and an exponential distribution.</div> <div>- TreeAnnotator_Onciderini_BD_exponential_run1-run8_consensus.tre: consensus tree from eight combined BEAST2 runs, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and an exponential distribution, after discarding the first 10% of initial generations as burn-in.</div> <div>&nbsp;</div> <div><strong>BEAST2_Onciderini_BD_uniform (zip file)</strong></div> <div>- BEAUTi_Onciderini_BD_uniform.xml: XML file generated by BEAUTi for running BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a uniform distribution.</div> <div>- BEAST2_Onciderini_BD_uniform_[1-8].log: log files from eight independent runs of BEAST2, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a uniform distribution.</div> <div>- TreeAnnotator_Onciderini_BD_uniform_run1-run8_consensus.out: TreeAnnotator output file combining the results of eight BEAST2 runs based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a uniform distribution.</div> <div>- TreeAnnotator_Onciderini_BD_uniform_run1-run8_consensus.tre: consensus tree from eight combined BEAST2 runs, based on the concatenated matrix of Onciderini, using a birth-death (BD) process model and a uniform distribution, after discarding the first 10% of initial generations as burn-in.</div> <div>&nbsp;</div> <div><strong>Comparative_analyses (zip file)</strong></div> <div><strong>RawData (folder):</strong> raw morphometric and girdling data, plus tree that was later pruned for downstream comparative analyses; these data were used as input for the OncidHeadDimorphism-DatasetPREP-FINAL.R data cleaning script.&nbsp;</div> <div>- Onciderini_BD_lognormal_run1-run8_consensus.nwk: newick version of TreeAnnotator_Onciderini_BD_lognormal_run1-run8_consensus.tre (outputted as a newick file by importing the .tre file into FigTree and exporting in newick format).</div> <div>- Measurements_Onciderini_Raw_Final.csv: individual-level raw morphometric data for Onciderini.</div> <div>- Behav_Matrix_2_states_trimmed_2022-12-15.csv: species-level data on girdling status for Onciderini species, with all Lochmaeocles species classified as girdlers (2 behavioral states across Onciderini species).&nbsp;</div> <div>- Matrix_3_states_trimmed_final.csv: species-level data on girdling status for Onciderini species, with all Lochmaeocles species classified as facultative girdlers (3 behavioral states across Onciderini species).&nbsp;</div> <div>- Matrix_2_states_trimmed_1LochGirdler_Final.csv: species-level data on girdling status for Onciderini species, with only one Lochmaeocles species (L. tessellatus) classified as a girdler (2 behavioral states across Onciderini species).&nbsp;</div> <div>&nbsp;</div> <div><strong>ProcessedData (folder):&nbsp;</strong>filtered data and pruned trees outputted by the OncidHeadDimorphism-DatasetPREP-FINAL.R script</div> <div>- oncid_f_36spp_clean.csv: dataset of species means and log-ratios for morphometric traits in females, plus girdling data; only includes species that have girdling data and are in the phylogenetic tree</div> <div>- oncid_m_42spp_clean.csv: dataset of species means and log-ratios for morphometric traits in males, plus girdling data; only includes species that have girdling data and are in the phylogenetic tree</div> <div>- oncid_sd_35spp_clean.csv: dataset of species means for sexual dimorphism in morphometric traits, plus girdling data; only includes species that have girdling data and are in the phylogenetic tree</div> <div>- oncid_girdlingbehav_allingroupspp_clean.csv: full dataset of girdling behavior for 56 Onciderini species that are in the phylogenetic tree; includes separate columns for the three alternative girdling classification schemes</div> <div>- oncid_tree_behavfull_56spp.nwk: pruned phylogenetic tree for the full girdling dataset (56 species)</div> <div>- oncid_tree_f_36spp.nwk: pruned phylogenetic tree for the female morphometric dataset (36 species)</div> <div>- oncid_tree_m_42spp.nwk: pruned phylogenetic tree for the male morphometric dataset (42 species)</div> <div>- oncid_tree_mf_43spp.nwk: pruned phylogenetic tree for all species with morphometric data for males or females; used for the stochastic character map next to the heatmap plot (Fig 4)</div> <div>- oncid_tree_sd_35spp.nwk: pruned phylogenetic tree for the sexual dimorphism dataset (35 species)</div> <div>&nbsp;</div> <div><strong>FittedModels (folder): </strong>fitted models (mvgls, model comparison analyses, OUM models, simmaps) outputted by the OncidHeadDimorphism-Analysis-FINAL.R script&nbsp;</div> <div>- MacroModelFits_logRtraits_f_36spp-2024-10-12.Rdata: summary of model comparison results for Brownian Motion (BM), single-peak Ornstein-Uhlenbeck (OU), multipeak OU (OUM), and multi-rate Brownian motion (BMM) models (univariate and multivariate) fitted to female morphometric data across 100 stochastic character maps of girdling behavior</div> <div>- MacroModelFits_logRtraits_m_42spp-2024-10-12.Rdata: summary of model comparison results for Brownian Motion (BM), single-peak Ornstein-Uhlenbeck (OU), multipeak OU (OUM), and multi-rate Brownian motion (BMM) models (univariate and multivariate) fitted to male morphometric data across 100 stochastic character maps of girdling behavior</div> <div>- MacroModelFits-SDDI-35spp_2024-10-11.Rdata: summary of model comparison results for Brownian Motion (BM), single-peak Ornstein-Uhlenbeck (OU), multipeak OU (OUM), and multi-rate Brownian motion (BMM) models (univariate and multivariate) fitted to sexual dimorphism data across 100 stochastic character maps of girdling behavior</div> <div>- mvgls-results-headsize-mf-2024-10-12.Rdata: fitted mvgls regression models for male and female traits (analyzed separately)</div> <div>- mvgls-results-sddi-2024-10-12.Rdata: fitted mvgls regression models for sexual dimorphism</div> <div>- OUM_headtraits_f_36spp-2024-10-12.Rdata: fitted OUM models and summary statistics for female head traits</div> <div>- OUM_headtraits_m_42spp-2024-10-12.Rdata: fitted OUM models and summary statistics for male head traits</div> <div>- OUM-SDDI-35spp-2024-10-12.Rdata: fitted OUM models and summary statistics for sexual dimorphism in head traits</div> <div>- simmaps_ard_full_2state.RDS: stochastic character maps of girdling behaviour for all 56 species with girdling data, with two behavioral states (girdling or non-girdling) - all Lochmaeocles species are classified as girdlers</div> <div>- simmaps_ard_full_3state.RDS: stochastic character maps of girdling behaviour for all 56 species with girdling data, with three behavioral states (girdling, non-girdling, or facultative girdling)</div> <div>- simmaps_ard_full_1Loch.RDS: stochastic character maps of girdling behaviour for all 56 species with girdling data, with two behavioral states (girdling or non-girdling) - only one Lochmaeocles species (L. tessellatus) is classified as a girdler</div> <div>- simmaps_ard_m.RDS: stochastic character map for the 42 species used in the analyses of male morphometric traits</div> <div>- simmaps_ard_f.RDS: stochastic character map for the 36 species used in the analyses of female morphometric traits</div> <div>- simmaps_ard.RDS: stochastic character map for the 35 species used in the sexual dimorphism analyses; 2 behavioral states.</div> <div>&nbsp;</div> <div><strong>Rscripts (folder):&nbsp;</strong>R scripts used to process data and run phylogenetic comparative analyses of head size and girdling behavior.</div> <div>- OncidHeadDimorphism-DatasetPREP-FINAL.R: R script used to filter data and prune trees from the RawData folder for downstream phylogenetic comparative analyses; outputs of this script are in the ProcessedData folder.</div> <div>- OncidHeadDimorphism-Analysis-FINAL.R: R script used to analyze data in the ProcessedData folder to answer questions about the origin and evolution of girdling behavior and the relationship between girdling and head size or head size sexual dimorphism; fitted models outputted by this script are in the FittedModels folder</div> <div>- OncidHeadDimorphism-Plots-FINAL.R: R script used to generate plots for the manuscript<br><br></div>

opencc-by-4.0May 2025View details →
zenodo36/100

Predation, functional response and demographic parameters of Orius albidipennis (Hemiptera:Anthocoridae) on Schizaphis graminum (Hemiptera:Aphididae): effect of host plant morphological attributes

<p>Plant attributes like leaf hairiness and trichome compactness diversely affect the biocontrol agents of phytophagous insect pests. In the current study, effect of physical plant features on life table characteristics and functional response of <em>Orius albidipennis </em>(Rueter) females feeding on <em>Schizaphis graminum </em>(Rondani) was investigated on two common wheat cultivars (Falat and Pishtaz) differing in leaf morphological features. The trichome density of wheat cultivars considerably influenced a broad spectrum of attributes related to the performance of <em>O. albidipennis</em>. The intrinsic rate of increase (<em>rm</em>) was significantly greater on Falat (0.09&plusmn;0.006) than on Pishtaz (0.06&plusmn;0.008) cultivar. Similarly, the net reproductive rate and finite rate of increase were greater on Falat (16.72&plusmn;3.38 and 1.083&plusmn;7.54) than on Pishtaz (8.08&plusmn;2.04 and 1.067&plusmn;9.49). Although <em>Orius </em>predators exhibited type III of functional response on both wheat cultivars, they had lesser searching efficiencies and higher handling times on Pishtaz than those on Falat cultivar. Moreover, the maximum attack rate (<em>T</em>/<em>Th</em>) was greater on Falat than on Pishtaz. Lesser maximum predation and greater handling time of the <em>Orius </em>predators on Pishtaz cultivar might be imputed to the significantly more condensed surface trichomes of its leaves than that of Falat leaves, which physically prevented movement of the <em>Orius </em>bugs and decreased prey encounter rate. Moreover, increase of trichome density negatively influenced on foraging behavior of the predatory bug. Females were also found to prefer wheat leaves with fewer trichomes as oviposition hosts. It seems that trichomes provided hinderance to the <em>orius </em>bug. To recapitulate, it could be stated that the efficiency of <em>O. albidipennis </em>in controlling <em>S. graminum </em>on wheat may be more beneficial in cultivars with lower trichome density.</p>

opencc-by-4.0Jul 2021View details →
dryad36/100

Interactions between protea plants and their animal mutualists and antagonists are structured more by energetic than morphological trait matching

<p class="MsoNormal"><span>Traits mediate mutualistic and antagonistic interactions between plants and animals, and should thus be useful for predicting trophic species interactions. Studies to date have examined the importance of morphological trait matching for plant-animal interactions, but have rarely explored the extent to which these interactions are shaped by matching between energetic provisions of plants and energetic demands of animals.</span></p> <p class="MsoNormal"><span>We tested whether energetic and/or morphological trait matching shapes interactions between <em>Protea</em> plant species and their interacting animal mutualists and antagonists in the Cape Floristic Region, South Africa.</span></p> <p class="MsoNormal"><span>We recorded interactions between 22 <em>Protea</em> species, pollinating insects, and vertebrates as well as seed predators (endophagous insect larvae in protea cones) at 21 study sites. To relate species interactions to matching trait pairs, we measured key morphological traits (shape and size of flower heads and seed cones, and mouth part length as well as body length) and quantified the animals' energetic demands (metabolic rate) together with the plants' energetic provisions (nectar sugar amount, seed-to-cone mass ratio). We calculated log ratios of both energetic and morphological traits between animals and plants as predictor variables for the number of observed interactions between <em>Protea</em> species and their animal interaction partners.</span></p> <p class="MsoNormal"><span>For both mutualistic and antagonistic interactions, we found significant effects of morphological and energetic trait ratios on the interactions between plants and animals. Trait ratios accounted for 11% to 22% of the variation in species interactions. Consistent with energetic trait matching, we found a hump-shaped relationship between interaction frequency and log ratios of energetic traits of animals and plants, indicating that interactions were most frequent at intermediate log ratios between energetic demand and provision. Effects of morphological trait ratios on interactions were statistically supported in most cases but were variable in the magnitude and shape of the predicted relationships. </span></p> <p><span>Across animal taxa and interaction types, energetic traits had more consistent effects on interactions between plants and animals than morphological traits. This suggests that energy can function as an important interaction currency and facilitate the understanding and prediction of trophic species interactions.</span></p>

opencc-zeroNov 2022View details →
dryad36/100

Quantifying the complexity of plant reproductive structures reveals a history of morphological and functional integration

Vascular plant reproductive structures have become more complex through time, evolving differentiated parts that interact in specialized ways. But quantifying these patterns at broad scales is challenging because lineages produce disparate reproductive structures that cannot readily be compared. We develop a novel approach for analyzing interactions within reproductive structures using networks, treating component parts as nodes and a suite of physical and functional interactions among parts as edges. We apply this approach to the plant fossil record, showing that interactions have generally increased through time and that the concentration of these interactions has shifted towards differentiated surrounding organs, resulting in more compact, functionally integrated structures. Such transference of function and morphological differentiation are widespread across plant lineages, but their extent and timing vary with reproductive biology; seed-producing structures show them more strongly than spore or pollen-producing structures. More broadly, our results demonstrate that major reproductive innovations like the origin of seeds and angiospermy were associated with increased integration and interactions among parts. However, they also reveal that for certain lineages, such as Mesozoic gymnosperms, millions of years elapsed between the origin of a reproductive innovation and a measurable increase in the integration and interaction among parts within their reproductive structures.

opencc-zeroAug 2023View details →
dryad36/100

Data from: Disentangling evolutionary, environmental and morphological drivers of plant anatomical adaptations to drought and cold in Himalayan graminoids

Open the record for dataset details and reuse information.

publicJun 2019View details →
dryad36/100

Ecological mechanisms explaining interactions within plant-hummingbird networks: morphological matching increases towards lower latitudes

Open the record for dataset details and reuse information.

publicMar 2020View details →
dryad36/100

Data from: Stronger cooling effects of transpiration and morphology of the plants from a hot dry habitat than from a hot wet habitat

Open the record for dataset details and reuse information.

publicMay 2018View details →
dryad36/100

Unveiling an asymmetric plant–fungal symbiosis: morphological, cytogenetic, and molecular characterization of a haploid <em>Epichloë festucae</em> strain associated with three polyploid cytotypes of the Iberian endemic grass <em>Festuca rothmaleri</em>

Open the record for dataset details and reuse information.

publicOct 2025View details →
dryad36/100

Quantifying the complexity of plant reproductive structures reveals a history of morphological and functional integration

Open the record for dataset details and reuse information.

publicOct 2023View details →
dryad36/100

Interactions between protea plants and their animal mutualists and antagonists are structured more by energetic than morphological trait matching

Open the record for dataset details and reuse information.

publicNov 2022View details →

ScienceDex guides

Understand access before you commit

These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

Compare curated datasets

Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record