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635 results for “respiration”
Microbial Bacterial Respiration in Lakes at North Temperate Lakes LTER 2000 - 2002
Lake Mendota, Madison, Wisconsin. Bacterial respiration of bacteria passing a 70 micron mesh. Based on bacterial growth efficiency determined empirically on bacteria production and oxygen depletion on microbes passing a 1 micron mesh. All samples from integrated sample of epilimnion to thermocline or 12 meters, which ever was more shallow. Method based on Roland, F. and J. J. Cole. 1999. Regulation of bacterial growth efficiency in a large turbid estuary. Aquatic Microbial Ecology 20:31-38 Sampling Frequency: fortnightly during ice-free season - every 6 weeks during ice-covered season Number of sites: 1
Microbial Planktonic Respiration in Lakes at North Temperate Lakes LTER 2001
Respiration of total plankton passing a 70 micron mesh, and bacteria passing a 1 micron mesh, calculated from loss of oxygen in lake water incubated at in situ temperatures. Oxygen concentration was determined using the Winkler reaction with azide modification. Final product concentration determined via spectrometry or titration with sodium thiosulfate. Titrations that may have overrun the endpoint were not included. The following equation for calculation of dissolved oxygen concentration from titration of Winkler end product with thiosulfate (from Wetzel, R. G. and G. E. Likens. 1991. Limnological Analyses, 2nd ed. Springer-Verlag, New York). Thiosulfate with a molarity of 0.20 N was used for all titrations. mg O2 L-1 = (ml titrant)*(molarity of thiosulfate)*(8000)/((ml of sample titrated)*((ml of bottle -3)/(ml of bottle))). The following equation is for calculation of dissolved oxygen calculation from spectophotometric analysis of Winkler reaction end product (from Roland, F., N. F. Caraco, J. J. Cole. 1999. Rapid and precise determination of dissolved organic oxygen by spectrophotometry: Evaluation of interference from color and turbidity. Limnol. Oceanogr. 44(4):1148-1154). mg O2 L-1 = absorbance at 430 nm (in units of cm-1) * 8.1-0.41 Sampling Frequency: fortnightly during ice-free season - every 6 weeks during ice-covered season Number of sites: 4
PsPM-HRM5: SCR, ECG and respiration measurements in response to positive/negative IAPS pictures, and neutral/aversive sounds
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements for each of 19 healthy unmedicated participants (8 males and 11 females aged 26.1 +/- 5.4 years) in response to 65 dB and 85 dB sounds as well as the 60 most arousing negative and the 60 most arousing positive (excluding explicit nude) IAPS pictures, presented for 1 s each. ITI was between 4-16 s.</p>
PsPM-RRM1-2: SCR, ECG, respiration and eye tracker measurements in response to electric stimulation or visual targets
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG), respiration and eye tracker (including pupillometry) measurements for each of 29 healthy unmedicated participants (7 males and 22 females aged 23.5 +/- 3.6 years) in response to 10 discomforting electric stimulations to the forearm (RRM1) or 10 visual targets in a visual detection task (RRM2). The sample partly overlaps with data set <a href="https://doi.org/10.5281/zenodo.1292568">PsPM-FR</a>. Some participants did not take part in RRM1 or RRM2 such that there are 25 recordings for RRM1 and 26 recordings for RRM2. Electric shock stimuli are 0.2 ms wide square current pulse repeated at 500 Hz for 500 ms and individually adjusted amplitude just below the pain threshold. Visual stimuli are red crosses (+) embedded in a white digit stream; each stimulus is presented during 200 ms and separated by a 800 ms blank interval. ITI is selected randomly on each trial from 40 s, 45 s or 50 s. A baseline period with distractors but no targets concludes experiment RRM2. (This is in contrast to the methods description in Bach et al. (2016), according to which the baseline period was randomly either in the beginning or at the end of the experiment. This discrepancy was caused by an error in the code that controlled the experiment presentation.)</p>
PsPM-TC: SCR, ECG, EMG and respiration measurements in a discriminant trace fear conditioning task with visual CS and electrical US.
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements. Also included are CS and US information, keypress responses and keypress response times from 18 healthy unmedicated participants (8 males and 10 females aged 23.89+/-2.52 years) participating in a classical (Pavlovian) discriminant trace fear conditioning task. CS were a red and a blue rectangle presented for 3 seconds. US consisted of 0.5 s square electric pulses with 0.2 ms duration and 10 Hz frequency. SOA between the CS onset and US was 4 s. The ITI was randomly determined on each trial to be 7, 9, or 11 s.</p>
PsPM-DoxMemP: SCR, ECG and respiration measurements in a delay fear conditioning task with visual CS and electrical US.
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements. Also included are CS and US information, keypress responses and keypress response times for 20 healthy unmedicated participants (7 males and 13 females aged 26.15+/-4.15 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. CS were a red and a blue rectangle. US consisted of 0.5 s square electric pulses with 0.2 ms duration and 10 Hz frequency. SOA between the CS onset and US was 3.5 s. CS and US co-terminated. The ITI was randomly determined on each trial to be 7, 9, or 11 s.</p>
PsPM-FR: SCR, ECG and respiration measurements in a delay fear conditioning task with visual CS and electrical US.
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements. Also included are CS and US information, keypress responses and keypress response times for 31 healthy unmedicated participants (09 males and 23 females aged 23.32+/-3.61 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. CS were a red and a blue rectangle. US consisted of 0.5 s square electric pulses with 0.2-ms duration and 10 Hz frequency. SOA between the CS onset and US was 3.5 s. CS and US co-terminated. During extinction phase, an auditory startle probe (ST) was delivered 3.8 s after CS onset via headphones (100 dB, 50 ms duration with 2ms on- and offset ramp). The ITI was randomly determined on each trial to be 7, 9, or 11 s.</p> <p> </p>
PsPM-SC4B: SCR, ECG, EMG, PSR and respiration measurements in a delay fear conditioning task with auditory CS and electrical US
<p>This dataset includes pupil size response (PSR), skin conductance response (SCR), electrocardiogram (ECG), electromyogram (EMG) and respiration measurements. Also included are CS and US information, keypress responses, keypress response times, key correctness and shock ratings for each of 21 healthy unmedicated participants (10 males and 11 females aged 22.9+/-3.0 years; discrepancies to published studies are due to misprints and exclusion of a subject with incomplete data, which was excluded in all conducted studies as well as here) participating in a classical (Pavlovian) discriminant delay fear conditioning task. Two pairs of CS+ and CS-, either complex or simple, were delivered with headphones (HD518, Sennheiser, Wedemark-Wennebostel, Germany) at about 68 dB. Complex stimuli were a sequence of four rising (400 to 800 Hz) or falling (800 to 400 Hz) sounds lasting 1 s each. Simple stimuli were tones with constant frequency (400 or 800 Hz) presented for 4 s. US consisted of square electric pulses with 0.2-ms duration and 10 Hz frequency, resulting in a total US duration of 0.5 s. SOA betwen the CS and US was 3.5 s. The ITI was randomly determined on each trial to be 7, 9, or 11 s.</p>
PsPM-DoxMem1: SCR, ECG and respiration measurements in an RCT using doxycycline/placebo during delay fear conditioning and retention.
<p>This dataset includes skin conductance response (SCR), electrocardiogram (ECG), respiration and electromyogramm (EMG, only relevant for retention phase) measurements. Also included are CS and US information, keypress responses and keypress response times for 78 healthy participants (40 males and 38 females aged 23.3+/-3.6 years) under either doxycycline or placebo during a classical (Pavlovian) discriminant delay fear conditioning task. CS were a red and a blue screen. US consisted of 0.5 s square electric pulses with participant-specific duration and 500 Hz frequency. SOA between the CS onset and US was 3.5 s. CS and US co-terminated. Before the fear conditioning task, participants completed an N-back task and several questionnaires. During the retention/extinction phase one week after learning and without drug, an auditory startle probe (ST) and no US was delivered 3.5 s after CS onset via headphones (100 dB, 50 ms duration with 2ms on- and offset ramp). In an immediately following re-learning phase, the ST was omitted and the CS reinforced with the same schedule as during acquisition. The ITI was randomly determined on each trial to be 7, 9, or 11 s.</p>
PsPM-LI: SCR, ECG, PSR and respiration measurements in a delay fear conditioning task with auditory CS and electrical US.
<p>This dataset includes pupil size response (PSR), skin conductance response(SCR), electrocardiogram (ECG) and respiration measurements for each of 20 healthy unmedicated participants (8 males and 12 females aged 22.8+/-3.3 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. (One additional participant in the initial sample in Korn et al. (2017) - but who did not finish the experiment and was not included into the analysis - is not contained in this dataset.) The acquisition data is separated into two sessions which were recorded consecutively with a break of approximately 5 min. CS consist of two sine tones with constant frequency (220 Hz or 440 Hz, 50-ms onset and offset ramp) and last for 6.5 s. US is a 0.5 s train of electric square pulses delivered with a constant current stimulator (Digitimer DS7A, Digitimer, Welwyn Garden City, UK) on participants' dominant forearm through a pin-cathode/ring-anode configuration. SOA betwen the CS and US is 6 s. The ITI is randomly determined on each trial to be 7, 9, or 11 s.</p>
CO2 Flux and Temperature Data for Estimating Thermal Acclimation in Ecosystem Respiration
We have compiled an extensive dataset of long-term, hourly CO2 flux measurements from 93 global eddy covariance sites to estimate the thermal response strength in nighttime ecosystem respiration. Flux data was sourced from AmeriFlux (https://ameriflux.lbl.gov/), FluxNet (https://fluxnet.org/), and ICOS (https://www.icos-cp.eu/). The processed data product encompasses five categories. (1) Long-term, directly measured, Ustar-filtered, hourly or subhourly nighttime ecosystem respiration, along with corresponding air temperature, soil temperature, and soil water content at the 93 sites. (2) Long-term gap-filled data, including hourly or subhourly net ecosystem exchange, air temperature, and soil temperature at these sites. (3) Annual topsoil (< 0.1 m) temperature and nighttime ecosystem respiration curves during the growing season, designed for calculating thermal response strength. (4) Estimated thermal response strength across these sites, detailed with geographic, climatic, soil, and vegetation conditions for each site. (5) An R script to calculate thermal response strength using the data product (3).
Soil respiration rates, biogeochemical pools, and mineral-associated organic matter from high organic matter and high mineral content coastal wetland soils in Apalachicola, Florida, 2022
This data set was used to observe how the application of dredged sediment would impact soil respirations rates, biogeochemical pools, mineral associated organic matter of coastal wetland soils from Apalachicola, Florida. To achieve this, a combination of intact core and bottle incubations were used, comparing a high organic matter coastal wetland soil to a high mineral content wetland soil which were collected in June, 2022. All laboratory analysis was conducted at the University of Central Florida in Orlando, Florida.
Light-saturated photosynthetic rate, dark respiration, stomatal conductance and ratio of internal to external carbon dioxide concentration from the 1980-82 Eriophorum vaginatum reciprocal transplant plots from Eagle Creek to Prudhoe Bay, Alaska, 2010
In 1980-1982, six transplant gardens were established along a latitudinal gradient in interior Alaska from Eagle Creek, AK, in the south to Prudhoe Bay, AK, in the north (Shaver et al. 1986) .Three sites, Toolik Lake (TL), Sagwon (SAG), and Prudhoe Bay (PB) are north of the continental divide and the remaining three, Eagle Creek (EC), No Name Creek (NN), and Coldfoot (CF), are south of the continental divide. Each garden consisted of 10 individual tussocks transplanted back to their home-site, as well as 10 individuals from each of the other transplant sites. Data were collected in July 2010 for tussocks transplanted in 1980-82 in a reciprocal transplant experiment and then harvested in 2011. Important variables are garden name, source population, light-saturated photosynthetic rate, dark respiration, stomatal conductance and ratio of internal to external carbon dioxide concentration.
Heterotrophic Respiration from Nine Nutrient Network Grasslands in North America
This experiment tracks the response of soil heterotrophic respiration (i.e., soil organic matter decomposition), enzyme expression, and microbial biomass in nine US grasslands participating in the globally-distributed Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year). These samples in the present dataset were collected at the same time as soil and plant samples for https://doi.org/10.6073/pasta/7f984c2ed9e63754577ee711e6d74a6e.
Periphyton Net Primary Productivity and Respiration Rates from the Taylor Slough, just outside Everglades National Park (FCE), South Florida from December 1998 to December 2004
Periphyton metabolism is being measured at TS/Ph1b, TS/Ph2, TS/Ph3, TS/Ph4, and TS/Ph5 every 6-8 weeks during the wet season. We quantify metabolic rates of periphyton assemblages using standard oxygen change techniques in 300mL light and dark BOD bottles in triplicate. Using YSI dissolved oxygen probes and meters, we measure dissolved oxygen change as the difference of initial and final oxygen concentrations during a two hour incubation period. We calculate net primary productivity and respiration rates in units of oxygen and carbon, then normalize to the organic content (ash free dry weight) of the incubated periphyton.
Periphyton Net Primary Productivity and Respiration Rates from the Taylor Slough, just outside Everglades National Park, South Florida (FCE) from December 1998 to August 2002
Once per year, at TS/Ph-4 and TS/Ph-5 we incubate periphyton from each site in water from each site in a complete factorial design. We quantify metabolic rates of periphyton assemblages using standard oxygen change techniques in 300mL light and dark BOD bottles in triplicate. Using YSI dissolved oxygen probes and meters, we measure dissolved oxygen change as the difference of initial and final oxygen concentrations over a two hour incubation. We calculate net primary productivity and respiration rates in units of oxygen and carbon, then normalize to the organic content (ash free dry weight) of the incubated periphyton.
Net Ecosystem Exchange, Ecosystem Respiration and meteoclimatic data of Alpine grasslands at Nivolet Plain, Gran Paradiso National Park, Italy 2017-2023
<p>This dataset presents georeferenced measurements collected at the Nivolet Plain in Gran Paradiso National Park (GPNP), western Italian Alps. The dataset includes the Net Ecosystem Exchange (NEE), Ecosystem Respiration (ER) and meteo-climatic variables, i.e. air and soil temperature, air relative humidity, soil volumetric water content, atmospheric pressure and solar irradiance. The measurements were conducted between 2017 and 2023 at five different sites at an elevation of approximately 2550-2750 meters a.s.l.</p> <p>To estimate NEE and ER, we employed the flux chamber method, measuring the temporal variation of carbon dioxide (CO2) concentration inside the chamber over a period of about 90 seconds. We used a customized portable non-steady-state dynamic flux chamber, paired with an InfraRed Gas Analyzer (IRGA) and a portable weather station. Measurements were taken at around 20 points per site during the snow-free season, spanning from June to October.</p> <p>The dataset is provided in a comma-separated text file (.csv) format. Each record corresponds to a single measurement point, with semicolons used as separators. The "NA" notation indicates values that are not available or have been excluded during quality control processes (e.g., due to battery failure). We use point as decimal separator.</p> <p>The sign convention for the fluxes is: a negative value indicates a CO2 flux from the atmosphere to the ecosystem, while a positive value represents a CO2 flux from the soil/ecosystem to the atmosphere. Consequently, ER values are positive, while NEE values can be positive or negative. The units for NEE and ER fluxes are molCO2 m-2 day-1 and μmolCO2 m-2 second-1. The first values in each record of the dataset indicate the observation details (sampling date, site, etc.), followed by the corresponding measured or calculated variables. NEE and ER values were estimated from the slope of the linear regression of CO2 concentration over time (ppm s-1) using a laboratory calibration curve.</p> <p>The calibration curve was created by relating known and pre-set CO2 fluxes (within the range expected in the field) with the corresponding measured slopes. The flux values were then scaled up based on the area of the chamber base (0.036 m2) and adjusted using the ratio of atmospheric pressure and air temperature during the measurement to those recorded during the calibration in the laboratory.</p>
PsPM-FER01: PSR, SCR, ECG and respiration measurements from a discriminant delay fear conditioning task with visual CS and electrical US.
<p>This dataset includes pupil size response (PSR), skin conductance response (SCR), electrocardiogram (ECG) and respiration measurements. Also included are CS and US information and shock expectancy ratings at the end of the experiment for 30 healthy unmedicated participants (12 males and 18 females aged 23.9+/-4.4 years) participating in a classical (Pavlovian) discriminant delay fear conditioning task. Fear acquisition consisted of 10 CS- and 32 CS+ trials (16 CSa+/16 CSb+). Half of the CS+ trials were paired with an electric shock. CS were colored triangles (yellow/red/blue). US consisted of a 500 ms train of 250 square pulses with individual pulse width of 0.2 ms. SOA between the CS onset and US was 3.5 seconds. CS and US co-terminated. The ITI was randomly determined as discrete values between 7-11 seconds (mean 9 seconds).</p> <p> </p>
Global annual soil respiration from 2000 to 2020
<p>This dataset contains a product of annual global soil respiration from 2000 to 2020 at 1 km×1 km spatial resolution. It is an updated dataset and the previous dataset includes a product of annual global soil respiration from 2000 to 2014 (<a href="https://doi.org/10.5061/dryad.w3r2280nq">https://doi.org/10.5061/dryad.w3r2280nq</a>). More details on this dataset are presented in the paper titled “Spatial and temporal variations in global soil respiration and their relationships with climate and land cover”. This dataset was derived using satellite remote sensing data, biome-specific statistical models, and 1,292 site years of globally-distributed in-situ soil respiration measurements. All data processing and statistical analyses were conducted using Matlab (The MathWorks, Natick, MA).</p>
Data for nocturnal plant respiration is under strong non-temperature control
<p>Data set contains</p> <p>1- Annual output (2000-2018) of simulated plant respiration and net primary productivity from JULES with standard (Q10=2) and temperature dependent Q10 (TDQ<sub>10</sub>) with and without incorporation of nocturnal non-temperature control of respiration. Related readme file is included (Readme JULES output.txt).</p> <p>2-Python code (manuscript-code.zip) and data sets (Source Data.zip) to produce all manuscript figures including supplementary material. Readme file is included within mansucript-code.zip.</p> <p> </p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.